A citation-based method for searching scientific literature

Linda Madisen, Tianyi Mao, Henner Koch, Jia-min Zhuo, Antal Berenyi, Shigeyoshi Fujisawa, Yun-Wei A Hsu, Alfredo J Garcia, Xuan Gu, Sebastien Zanella, Jolene Kidney, Hong Gu, Yimei Mao, Bryan M Hooks, Edward S Boyden, György Buzsáki, Jan Marino Ramirez, Allan R Jones, Karel Svoboda, Xue Han, Eric E Turner, Hongkui Zeng. Nat Neurosci 2012
Times Cited: 679







List of co-cited articles
661 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


A robust and high-throughput Cre reporting and characterization system for the whole mouse brain.
Linda Madisen, Theresa A Zwingman, Susan M Sunkin, Seung Wook Oh, Hatim A Zariwala, Hong Gu, Lydia L Ng, Richard D Palmiter, Michael J Hawrylycz, Allan R Jones,[...]. Nat Neurosci 2010
21

A resource of Cre driver lines for genetic targeting of GABAergic neurons in cerebral cortex.
Hiroki Taniguchi, Miao He, Priscilla Wu, Sangyong Kim, Raehum Paik, Ken Sugino, Duda Kvitsiani, Yu Fu, Jiangteng Lu, Ying Lin,[...]. Neuron 2011
952
18

A developmental switch in the response of DRG neurons to ETS transcription factor signaling.
Simon Hippenmeyer, Eline Vrieseling, Markus Sigrist, Thomas Portmann, Celia Laengle, David R Ladle, Silvia Arber. PLoS Biol 2005
643
11

Millisecond-timescale, genetically targeted optical control of neural activity.
Edward S Boyden, Feng Zhang, Ernst Bamberg, Georg Nagel, Karl Deisseroth. Nat Neurosci 2005
10

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
8

Genome-wide atlas of gene expression in the adult mouse brain.
Ed S Lein, Michael J Hawrylycz, Nancy Ao, Mikael Ayres, Amy Bensinger, Amy Bernard, Andrew F Boe, Mark S Boguski, Kevin S Brockway, Emi J Byrnes,[...]. Nature 2007
8

A Suite of Transgenic Driver and Reporter Mouse Lines with Enhanced Brain-Cell-Type Targeting and Functionality.
Tanya L Daigle, Linda Madisen, Travis A Hage, Matthew T Valley, Ulf Knoblich, Rylan S Larsen, Marc M Takeno, Lawrence Huang, Hong Gu, Rachael Larsen,[...]. Cell 2018
160
8

NIH Image to ImageJ: 25 years of image analysis.
Caroline A Schneider, Wayne S Rasband, Kevin W Eliceiri. Nat Methods 2012
7

Melanocortin-4 receptors expressed by cholinergic neurons regulate energy balance and glucose homeostasis.
Jari Rossi, Nina Balthasar, David Olson, Michael Scott, Eric Berglund, Charlotte E Lee, Michelle J Choi, Danielle Lauzon, Bradford B Lowell, Joel K Elmquist. Cell Metab 2011
351
7


Inhibition of inhibition in visual cortex: the logic of connections between molecularly distinct interneurons.
Carsten K Pfeffer, Mingshan Xue, Miao He, Z Josh Huang, Massimo Scanziani. Nat Neurosci 2013
626
7

Leptin action on GABAergic neurons prevents obesity and reduces inhibitory tone to POMC neurons.
Linh Vong, Chianping Ye, Zongfang Yang, Brian Choi, Streamson Chua, Bradford B Lowell. Neuron 2011
603
6


Channelrhodopsin-2, a directly light-gated cation-selective membrane channel.
Georg Nagel, Tanjef Szellas, Wolfram Huhn, Suneel Kateriya, Nona Adeishvili, Peter Berthold, Doris Ollig, Peter Hegemann, Ernst Bamberg. Proc Natl Acad Sci U S A 2003
6

Targeting Cre recombinase to specific neuron populations with bacterial artificial chromosome constructs.
Shiaoching Gong, Martin Doughty, Carroll R Harbaugh, Alexander Cummins, Mary E Hatten, Nathaniel Heintz, Charles R Gerfen. J Neurosci 2007
511
6

Fully integrated silicon probes for high-density recording of neural activity.
James J Jun, Nicholas A Steinmetz, Joshua H Siegle, Daniel J Denman, Marius Bauza, Brian Barbarits, Albert K Lee, Costas A Anastassiou, Alexandru Andrei, Çağatay Aydın,[...]. Nature 2017
451
6

Regional Blood Flow in the Normal and Ischemic Brain Is Controlled by Arteriolar Smooth Muscle Cell Contractility and Not by Capillary Pericytes.
Robert A Hill, Lei Tong, Peng Yuan, Sasidhar Murikinati, Shobhana Gupta, Jaime Grutzendler. Neuron 2015
323
6

Driving fast-spiking cells induces gamma rhythm and controls sensory responses.
Jessica A Cardin, Marie Carlén, Konstantinos Meletis, Ulf Knoblich, Feng Zhang, Karl Deisseroth, Li-Huei Tsai, Christopher I Moore. Nature 2009
6

Distributed coding of choice, action and engagement across the mouse brain.
Nicholas A Steinmetz, Peter Zatka-Haas, Matteo Carandini, Kenneth D Harris. Nature 2019
98
6

Open Ephys: an open-source, plugin-based platform for multichannel electrophysiology.
Joshua H Siegle, Aarón Cuevas López, Yogi A Patel, Kirill Abramov, Shay Ohayon, Jakob Voigts. J Neural Eng 2017
115
5

Optogenetics in neural systems.
Ofer Yizhar, Lief E Fenno, Thomas J Davidson, Murtaza Mogri, Karl Deisseroth. Neuron 2011
949
5

Flow of cortical activity underlying a tactile decision in mice.
Zengcai V Guo, Nuo Li, Daniel Huber, Eran Ophir, Diego Gutnisky, Jonathan T Ting, Guoping Feng, Karel Svoboda. Neuron 2014
281
5

Spontaneous behaviors drive multidimensional, brainwide activity.
Carsen Stringer, Marius Pachitariu, Nicholas Steinmetz, Charu Bai Reddy, Matteo Carandini, Kenneth D Harris. Science 2019
204
5

A mesoscale connectome of the mouse brain.
Seung Wook Oh, Julie A Harris, Lydia Ng, Brent Winslow, Nicholas Cain, Stefan Mihalas, Quanxin Wang, Chris Lau, Leonard Kuan, Alex M Henry,[...]. Nature 2014
988
5

Characterization of engineered channelrhodopsin variants with improved properties and kinetics.
John Y Lin, Michael Z Lin, Paul Steinbach, Roger Y Tsien. Biophys J 2009
394
5

A molecular atlas of cell types and zonation in the brain vasculature.
Michael Vanlandewijck, Liqun He, Maarja Andaloussi Mäe, Johanna Andrae, Koji Ando, Francesca Del Gaudio, Khayrun Nahar, Thibaud Lebouvier, Bàrbara Laviña, Leonor Gouveia,[...]. Nature 2018
493
5

Transgenic mice for intersectional targeting of neural sensors and effectors with high specificity and performance.
Linda Madisen, Aleena R Garner, Daisuke Shimaoka, Amy S Chuong, Nathan C Klapoetke, Lu Li, Alexander van der Bourg, Yusuke Niino, Ladan Egolf, Claudio Monetti,[...]. Neuron 2015
457
5

Rapid, reversible activation of AgRP neurons drives feeding behavior in mice.
Michael J Krashes, Shuichi Koda, ChianPing Ye, Sarah C Rogan, Andrew C Adams, Daniel S Cusher, Eleftheria Maratos-Flier, Bryan L Roth, Bradford B Lowell. J Clin Invest 2011
725
5

Synaptic release of GABA by AgRP neurons is required for normal regulation of energy balance.
Qingchun Tong, Chian-Ping Ye, Juli E Jones, Joel K Elmquist, Bradford B Lowell. Nat Neurosci 2008
402
5

GABAergic Interneurons in the Neocortex: From Cellular Properties to Circuits.
Robin Tremblay, Soohyun Lee, Bernardo Rudy. Neuron 2016
554
5


The logic of single-cell projections from visual cortex.
Yunyun Han, Justus M Kebschull, Robert A A Campbell, Devon Cowan, Fabia Imhof, Anthony M Zador, Thomas D Mrsic-Flogel. Nature 2018
103
5

Cortical excitatory neurons and glia, but not GABAergic neurons, are produced in the Emx1-expressing lineage.
Jessica A Gorski, Tiffany Talley, Mengsheng Qiu, Luis Puelles, John L R Rubenstein, Kevin R Jones. J Neurosci 2002
720
4

Molecular and cellular approaches for diversifying and extending optogenetics.
Viviana Gradinaru, Feng Zhang, Charu Ramakrishnan, Joanna Mattis, Rohit Prakash, Ilka Diester, Inbal Goshen, Kimberly R Thompson, Karl Deisseroth. Cell 2010
573
4

Molecular Diversity and Specializations among the Cells of the Adult Mouse Brain.
Arpiar Saunders, Evan Z Macosko, Alec Wysoker, Melissa Goldman, Fenna M Krienen, Heather de Rivera, Elizabeth Bien, Matthew Baum, Laura Bortolin, Shuyu Wang,[...]. Cell 2018
380
4

Optogenetic control of heart muscle in vitro and in vivo.
Tobias Bruegmann, Daniela Malan, Michael Hesse, Thomas Beiert, Christopher J Fuegemann, Bernd K Fleischmann, Philipp Sasse. Nat Methods 2010
244
4

Optogenetic determination of the myocardial requirements for extrasystoles by cell type-specific targeting of ChannelRhodopsin-2.
Tania Zaglia, Nicola Pianca, Giulia Borile, Francesca Da Broi, Claudia Richter, Marina Campione, Stephan E Lehnart, Stefan Luther, Domenico Corrado, Lucile Miquerol,[...]. Proc Natl Acad Sci U S A 2015
42
9

Regulation of parkinsonian motor behaviours by optogenetic control of basal ganglia circuitry.
Alexxai V Kravitz, Benjamin S Freeze, Philip R L Parker, Kenneth Kay, Myo T Thwin, Karl Deisseroth, Anatol C Kreitzer. Nature 2010
4

Modeling the Spatiotemporal Dynamics of Light and Heat Propagation for In Vivo Optogenetics.
Joseph M Stujenske, Timothy Spellman, Joshua A Gordon. Cell Rep 2015
146
4

Short-term synaptic plasticity.
Robert S Zucker, Wade G Regehr. Annu Rev Physiol 2002
4

Anatomical characterization of Cre driver mice for neural circuit mapping and manipulation.
Julie A Harris, Karla E Hirokawa, Staci A Sorensen, Hong Gu, Maya Mills, Lydia L Ng, Phillip Bohn, Marty Mortrud, Benjamin Ouellette, Jolene Kidney,[...]. Front Neural Circuits 2014
189
4

Spike sorting for large, dense electrode arrays.
Cyrille Rossant, Shabnam N Kadir, Dan F M Goodman, John Schulman, Maximilian L D Hunter, Aman B Saleem, Andres Grosmark, Mariano Belluscio, George H Denfield, Alexander S Ecker,[...]. Nat Neurosci 2016
260
4

Ultrasensitive fluorescent proteins for imaging neuronal activity.
Tsai-Wen Chen, Trevor J Wardill, Yi Sun, Stefan R Pulver, Sabine L Renninger, Amy Baohan, Eric R Schreiter, Rex A Kerr, Michael B Orger, Vivek Jayaraman,[...]. Nature 2013
4

Independent optical excitation of distinct neural populations.
Nathan C Klapoetke, Yasunobu Murata, Sung Soo Kim, Stefan R Pulver, Amanda Birdsey-Benson, Yong Ku Cho, Tania K Morimoto, Amy S Chuong, Eric J Carpenter, Zhijian Tian,[...]. Nat Methods 2014
843
4

A gene expression atlas of the central nervous system based on bacterial artificial chromosomes.
Shiaoching Gong, Chen Zheng, Martin L Doughty, Kasia Losos, Nicholas Didkovsky, Uta B Schambra, Norma J Nowak, Alexandra Joyner, Gabrielle Leblanc, Mary E Hatten,[...]. Nature 2003
4

A global double-fluorescent Cre reporter mouse.
Mandar Deepak Muzumdar, Bosiljka Tasic, Kazunari Miyamichi, Ling Li, Liqun Luo. Genesis 2007
4

Genetic targeting of principal neurons in neocortex and hippocampus of NEX-Cre mice.
Sandra Goebbels, Ingo Bormuth, Ulli Bode, Ola Hermanson, Markus H Schwab, Klaus-Armin Nave. Genesis 2006
305
4

A Cre-inducible diphtheria toxin receptor mediates cell lineage ablation after toxin administration.
Thorsten Buch, Frank L Heppner, Christine Tertilt, Tobias J A J Heinen, Marcel Kremer, F Thomas Wunderlich, Steffen Jung, Ari Waisman. Nat Methods 2005
518
4

Neocortical excitation/inhibition balance in information processing and social dysfunction.
Ofer Yizhar, Lief E Fenno, Matthias Prigge, Franziska Schneider, Thomas J Davidson, Daniel J O'Shea, Vikaas S Sohal, Inbal Goshen, Joel Finkelstein, Jeanne T Paz,[...]. Nature 2011
4

Electrotonic coupling of excitable and nonexcitable cells in the heart revealed by optogenetics.
T Alexander Quinn, Patrizia Camelliti, Eva A Rog-Zielinska, Urszula Siedlecka, Tommaso Poggioli, Eileen T O'Toole, Thomas Knöpfel, Peter Kohl. Proc Natl Acad Sci U S A 2016
104
4


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.