A citation-based method for searching scientific literature

Zhongjing Su, Dongyang Huang. Genes (Basel) 2021
Times Cited: 2







List of co-cited articles
1 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions.
Daehwan Kim, Geo Pertea, Cole Trapnell, Harold Pimentel, Ryan Kelley, Steven L Salzberg. Genome Biol 2013
100

Lung Protection by Cathepsin C Inhibition: A New Hope for COVID-19 and ARDS?
Brice Korkmaz, Adam Lesner, Sylvain Marchand-Adam, Celia Moss, Dieter E Jenne. J Med Chem 2020
23
50

Annexin A2 on lung epithelial cell surface is recognized by severe acute respiratory syndrome-associated coronavirus spike domain 2 antibodies.
Yi-Ting Fang, Chiou-Feng Lin, Pao-Chi Liao, Yu-Min Kuo, Shuying Wang, Trai-Ming Yeh, Chi-Chang K Shieh, Ih-Jen Su, Huan-Yao Lei, Yee-Shin Lin. Mol Immunol 2010
24
50

Viral modulation of cellular RNA alternative splicing: A new key player in virus-host interactions?
Simon Boudreault, Patricia Roy, Guy Lemay, Martin Bisaillon. Wiley Interdiscip Rev RNA 2019
31
50

Gene expression profiles in peripheral blood mononuclear cells of SARS patients.
Shi-Yan Yu, Yun-Wen Hu, Xiao-Ying Liu, Wei Xiong, Zhi-Tong Zhou, Zheng-Hong Yuan. World J Gastroenterol 2005
38
50

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
50

SKP2 attenuates autophagy through Beclin1-ubiquitination and its inhibition reduces MERS-Coronavirus infection.
Nils C Gassen, Daniela Niemeyer, Doreen Muth, Victor M Corman, Silvia Martinelli, Alwine Gassen, Kathrin Hafner, Jan Papies, Kirstin Mösbauer, Andreas Zellner,[...]. Nat Commun 2019
177
50

Age-dependent regulation of SARS-CoV-2 cell entry genes and cell death programs correlates with COVID-19 severity.
Zintis Inde, Ben A Croker, Clarence Yapp, Gaurav N Joshi, Johan Spetz, Cameron Fraser, Xingping Qin, Le Xu, Brian Deskin, Elisa Ghelfi,[...]. Sci Adv 2021
10
50

Aberrant splicing and defective mRNA production induced by somatic spliceosome mutations in myelodysplasia.
Yusuke Shiozawa, Luca Malcovati, Anna Gallì, Aiko Sato-Otsubo, Keisuke Kataoka, Yusuke Sato, Yosaku Watatani, Hiromichi Suzuki, Tetsuichi Yoshizato, Kenichi Yoshida,[...]. Nat Commun 2018
78
50

The interaction of the SARS coronavirus non-structural protein 10 with the cellular oxido-reductase system causes an extensive cytopathic effect.
Qihan Li, Lichun Wang, Chenghong Dong, Yanchun Che, Li Jiang, Longding Liu, Hongling Zhao, Yun Liao, Yi Sheng, Shaozhong Dong,[...]. J Clin Virol 2005
21
50

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists.
Da Wei Huang, Brad T Sherman, Richard A Lempicki. Nucleic Acids Res 2009
50

Near-optimal probabilistic RNA-seq quantification.
Nicolas L Bray, Harold Pimentel, Páll Melsted, Lior Pachter. Nat Biotechnol 2016
50

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources.
Da Wei Huang, Brad T Sherman, Richard A Lempicki. Nat Protoc 2009
50


Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation.
Nuala A O'Leary, Mathew W Wright, J Rodney Brister, Stacy Ciufo, Diana Haddad, Rich McVeigh, Bhanu Rajput, Barbara Robbertse, Brian Smith-White, Danso Ako-Adjei,[...]. Nucleic Acids Res 2016
50

ENCODE data in the UCSC Genome Browser: year 5 update.
Kate R Rosenbloom, Cricket A Sloan, Venkat S Malladi, Timothy R Dreszer, Katrina Learned, Vanessa M Kirkup, Matthew C Wong, Morgan Maddren, Ruihua Fang, Steven G Heitner,[...]. Nucleic Acids Res 2013
555
50

Alternate splicing of transcripts upon Mycobacterium tuberculosis infection impacts the expression of functional protein domains.
Haroon Kalam, Kartikeya Singh, Komal Chauhan, Mary F Fontana, Dhiraj Kumar. IUBMB Life 2018
11
50

Analysis of serum cytokines in patients with severe acute respiratory syndrome.
Yuanchun Zhang, Jing Li, Yuliang Zhan, Lianqiu Wu, Xueying Yu, Wenjian Zhang, Liya Ye, Shiqing Xu, Ruihua Sun, Yunting Wang,[...]. Infect Immun 2004
219
50

Cellular RNA binding proteins NS1-BP and hnRNP K regulate influenza A virus RNA splicing.
Pei-Ling Tsai, Ni-Ting Chiou, Sharon Kuss, Adolfo García-Sastre, Kristen W Lynch, Beatriz M A Fontoura. PLoS Pathog 2013
55
50

Viral-induced alternative splicing of host genes promotes influenza replication.
Matthew G Thompson, Mark Dittmar, Michael J Mallory, Prasanna Bhat, Max B Ferretti, Beatriz Ma Fontoura, Sara Cherry, Kristen W Lynch. Elife 2020
11
50

Imbalanced Host Response to SARS-CoV-2 Drives Development of COVID-19.
Daniel Blanco-Melo, Benjamin E Nilsson-Payant, Wen-Chun Liu, Skyler Uhl, Daisy Hoagland, Rasmus Møller, Tristan X Jordan, Kohei Oishi, Maryline Panis, David Sachs,[...]. Cell 2020
50

The Global Phosphorylation Landscape of SARS-CoV-2 Infection.
Mehdi Bouhaddou, Danish Memon, Bjoern Meyer, Kris M White, Veronica V Rezelj, Miguel Correa Marrero, Benjamin J Polacco, James E Melnyk, Svenja Ulferts, Robyn M Kaake,[...]. Cell 2020
381
50

Canine respiratory coronavirus employs caveolin-1-mediated pathway for internalization to HRT-18G cells.
Artur Szczepanski, Katarzyna Owczarek, Aleksandra Milewska, Zbigniew Baster, Zenon Rajfur, Judy A Mitchell, Krzysztof Pyrc. Vet Res 2018
20
50


In vivo antiviral host transcriptional response to SARS-CoV-2 by viral load, sex, and age.
Nicole A P Lieberman, Vikas Peddu, Hong Xie, Lasata Shrestha, Meei-Li Huang, Megan C Mears, Maria N Cajimat, Dennis A Bente, Pei-Yong Shi, Francesca Bovier,[...]. PLoS Biol 2020
121
50

Age-dependent regulation of SARS-CoV-2 cell entry genes and cell death programs correlates with COVID-19 disease severity.
Zintis Inde, Clarence Yapp, Gaurav N Joshi, Johan Spetz, Cameron Fraser, Brian Deskin, Elisa Ghelfi, Chhinder Sodhi, David Hackam, Lester Kobzik,[...]. bioRxiv 2020
9
50

The UCSC Genome Browser database: update 2011.
Pauline A Fujita, Brooke Rhead, Ann S Zweig, Angie S Hinrichs, Donna Karolchik, Melissa S Cline, Mary Goldman, Galt P Barber, Hiram Clawson, Antonio Coelho,[...]. Nucleic Acids Res 2011
793
50

In silico model for miRNA-mediated regulatory network in cancer.
Khandakar Tanvir Ahmed, Jiao Sun, William Chen, Irene Martinez, Sze Cheng, Wencai Zhang, Jeongsik Yong, Wei Zhang. Brief Bioinform 2021
2
50

Monitoring of S protein maturation in the endoplasmic reticulum by calnexin is important for the infectivity of severe acute respiratory syndrome coronavirus.
Masaya Fukushi, Yoshiyuki Yoshinaka, Yusuke Matsuoka, Seisuke Hatakeyama, Yukihito Ishizaka, Teruo Kirikae, Takehiko Sasazuki, Tohru Miyoshi-Akiyama. J Virol 2012
43
50

Comparative Transcriptome Analysis Reveals the Intensive Early Stage Responses of Host Cells to SARS-CoV-2 Infection.
Jiya Sun, Fei Ye, Aiping Wu, Ren Yang, Mei Pan, Jie Sheng, Wenjie Zhu, Longfei Mao, Ming Wang, Zanxian Xia,[...]. Front Microbiol 2020
38
50

Mitochondria in lung disease.
Suzanne M Cloonan, Augustine M K Choi. J Clin Invest 2016
138
50

SARS-CoV-2 Disrupts Splicing, Translation, and Protein Trafficking to Suppress Host Defenses.
Abhik K Banerjee, Mario R Blanco, Emily A Bruce, Drew D Honson, Linlin M Chen, Amy Chow, Prashant Bhat, Noah Ollikainen, Sofia A Quinodoz, Colin Loney,[...]. Cell 2020
168
50

AS-Quant: Detection and Visualization of Alternative Splicing Events with RNA-seq Data.
Naima Ahmed Fahmi, Heba Nassereddeen, Jaewoong Chang, Meeyeon Park, Hsinsung Yeh, Jiao Sun, Deliang Fan, Jeongsik Yong, Wei Zhang. Int J Mol Sci 2021
1
100

Clinical manifestations and inflammatory cytokine responses in patients with severe acute respiratory syndrome.
Wang-Huei Sheng, Bor-Luen Chiang, Shan-Chwen Chang, Hung-Nern Ho, Jann-Tay Wang, Yee-Chun Chen, Cheng-Hsiang Hsiao, Po-Ren Hseuh, Wei-Chu Chie, Pan-Chyr Yang. J Formos Med Assoc 2005
36
50

Multilevel proteomics reveals host perturbations by SARS-CoV-2 and SARS-CoV.
Alexey Stukalov, Virginie Girault, Vincent Grass, Ozge Karayel, Valter Bergant, Christian Urban, Darya A Haas, Yiqi Huang, Lila Oubraham, Anqi Wang,[...]. Nature 2021
139
50

Replication of human coronaviruses SARS-CoV, HCoV-NL63 and HCoV-229E is inhibited by the drug FK506.
Javier Carbajo-Lozoya, Marcel A Müller, Stephan Kallies, Volker Thiel, Christian Drosten, Albrecht von Brunn. Virus Res 2012
142
50


Scarecrow plays a role in establishing Kranz anatomy in maize leaves.
Thomas L Slewinski, Alyssa A Anderson, Cankui Zhang, Robert Turgeon. Plant Cell Physiol 2012
70
50

The Alter Retina: Alternative Splicing of Retinal Genes in Health and Disease.
Izarbe Aísa-Marín, Rocío García-Arroyo, Serena Mirra, Gemma Marfany. Int J Mol Sci 2021
3
50


edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.
Mark D Robinson, Davis J McCarthy, Gordon K Smyth. Bioinformatics 2010
50

A selective ER-phagy exerts procollagen quality control via a Calnexin-FAM134B complex.
Alison Forrester, Chiara De Leonibus, Paolo Grumati, Elisa Fasana, Marilina Piemontese, Leopoldo Staiano, Ilaria Fregno, Andrea Raimondi, Alessandro Marazza, Gemma Bruno,[...]. EMBO J 2019
90
50

Pro- and antiangiogenic VEGF and its receptor status for the severity of diabetic retinopathy.
Suman K Paine, Lakshmi K Mondal, Prasanta K Borah, Chandra K Bhattacharya, Jagadish Mahanta. Mol Vis 2017
20
50

Neurodegeneration, Neuroprotection and Regeneration in the Zebrafish Retina.
Salvatore L Stella, Jasmine S Geathers, Sarah R Weber, Michael A Grillo, Alistair J Barber, Jeffrey M Sundstrom, Stephanie L Grillo. Cells 2021
6
50

Genome-wide mRNA analysis reveals a TUBD1 isoform profile as a potential biomarker for diabetic retinopathy development.
Vanessa Villegas-Ruiz, Ferdinand Hendlmeier, Beatriz Buentello-Volante, José L Rodríguez-Loaiza, Antonio Miranda-Duarte, Juan C Zenteno. Exp Eye Res 2017
5
50


Diabetic Retinopathy and Laser Therapy in Rats: A Protein-Protein Interaction Network Analysis.
Akram Safaei, Mostafa Rezaei Tavirani, Mona Zamanian Azodi, Alireza Lashay, Seyed Farzad Mohammadi, Mohamad Ghasemi Broumand, Ali Asghar Peyvandi, Farshad Okhovatian, Hassan Peyvandi, Mohammad Rostami Nejad. J Lasers Med Sci 2017
17
50

Retinal and circulating miRNA expression patterns in diabetic retinopathy: An in silico and in vivo approach.
Chiara Bianca Maria Platania, Rosa Maisto, Maria Consiglia Trotta, Michele D'Amico, Settimio Rossi, Carlo Gesualdo, Giovanbattista D'Amico, Cornel Balta, Hildegard Herman, Anca Hermenean,[...]. Br J Pharmacol 2019
60
50


Comprehensive Analysis of Cell Population Dynamics and Related Core Genes During Vitiligo Development.
Jingzhan Zhang, Shirong Yu, Wen Hu, Man Wang, Dilinuer Abudoureyimu, Dong Luo, Tingting Li, Linglong Long, Hui Zeng, Chao Cheng,[...]. Front Genet 2021
3
50


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.