A citation-based method for searching scientific literature

Jorge Urresti, Pan Zhang, Patricia Moran-Losada, Nam-Kyung Yu, Priscilla D Negraes, Cleber A Trujillo, Danny Antaki, Megha Amar, Kevin Chau, Akula Bala Pramod, Jolene Diedrich, Leon Tejwani, Sarah Romero, Jonathan Sebat, John R Yates Iii, Alysson R Muotri, Lilia M Iakoucheva. Mol Psychiatry 2021
Times Cited: 2







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Assessment of transcript reconstruction methods for RNA-seq.
Tamara Steijger, Josep F Abril, Pär G Engström, Felix Kokocinski, Tim J Hubbard, Roderic Guigó, Jennifer Harrow, Paul Bertone. Nat Methods 2013
341
50

The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible.
Damian Szklarczyk, John H Morris, Helen Cook, Michael Kuhn, Stefan Wyder, Milan Simonovic, Alberto Santos, Nadezhda T Doncheva, Alexander Roth, Peer Bork,[...]. Nucleic Acids Res 2017
50

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation.
Cole Trapnell, Brian A Williams, Geo Pertea, Ali Mortazavi, Gordon Kwan, Marijke J van Baren, Steven L Salzberg, Barbara J Wold, Lior Pachter. Nat Biotechnol 2010
50


Rbfox3-regulated alternative splicing of Numb promotes neuronal differentiation during development.
Kee K Kim, Joseph Nam, Yoh-Suke Mukouyama, Sachiyo Kawamoto. J Cell Biol 2013
60
50


Functional consequences of developmentally regulated alternative splicing.
Auinash Kalsotra, Thomas A Cooper. Nat Rev Genet 2011
408
50

Alternative splicing takes shape during neuronal development.
Paula Grabowski. Curr Opin Genet Dev 2011
50
50

Spatiotemporal 16p11.2 protein network implicates cortical late mid-fetal brain development and KCTD13-Cul3-RhoA pathway in psychiatric diseases.
Guan Ning Lin, Roser Corominas, Irma Lemmens, Xinping Yang, Jan Tavernier, David E Hill, Marc Vidal, Jonathan Sebat, Lilia M Iakoucheva. Neuron 2015
79
50


Brain-expressed exons under purifying selection are enriched for de novo mutations in autism spectrum disorder.
Mohammed Uddin, Kristiina Tammimies, Giovanna Pellecchia, Babak Alipanahi, Pingzhao Hu, Zhuozhi Wang, Dalila Pinto, Lynette Lau, Thomas Nalpathamkalam, Christian R Marshall,[...]. Nat Genet 2014
100
50

Rapid generation of splicing reporters with pSpliceExpress.
Shivendra Kishore, Amit Khanna, Stefan Stamm. Gene 2008
42
50

GeneMANIA prediction server 2013 update.
Khalid Zuberi, Max Franz, Harold Rodriguez, Jason Montojo, Christian Tannus Lopes, Gary D Bader, Quaid Morris. Nucleic Acids Res 2013
246
50

Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells.
Alex K Shalek, Rahul Satija, Xian Adiconis, Rona S Gertner, Jellert T Gaublomme, Raktima Raychowdhury, Schraga Schwartz, Nir Yosef, Christine Malboeuf, Diana Lu,[...]. Nature 2013
682
50

The evolutionary landscape of alternative splicing in vertebrate species.
Nuno L Barbosa-Morais, Manuel Irimia, Qun Pan, Hui Y Xiong, Serge Gueroussov, Leo J Lee, Valentina Slobodeniuc, Claudia Kutter, Stephen Watt, Recep Colak,[...]. Science 2012
538
50

Widespread Expansion of Protein Interaction Capabilities by Alternative Splicing.
Xinping Yang, Jasmin Coulombe-Huntington, Shuli Kang, Gloria M Sheynkman, Tong Hao, Aaron Richardson, Song Sun, Fan Yang, Yun A Shen, Ryan R Murray,[...]. Cell 2016
235
50

Low load for disruptive mutations in autism genes and their biased transmission.
Ivan Iossifov, Dan Levy, Jeremy Allen, Kenny Ye, Michael Ronemus, Yoon-Ha Lee, Boris Yamrom, Michael Wigler. Proc Natl Acad Sci U S A 2015
75
50

Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations.
Brian J O'Roak, Laura Vives, Santhosh Girirajan, Emre Karakoc, Niklas Krumm, Bradley P Coe, Roie Levy, Arthur Ko, Choli Lee, Joshua D Smith,[...]. Nature 2012
50

FMRP stalls ribosomal translocation on mRNAs linked to synaptic function and autism.
Jennifer C Darnell, Sarah J Van Driesche, Chaolin Zhang, Ka Ying Sharon Hung, Aldo Mele, Claire E Fraser, Elizabeth F Stone, Cynthia Chen, John J Fak, Sung Wook Chi,[...]. Cell 2011
50

Comprehensive Analyses of Tissue-Specific Networks with Implications to Psychiatric Diseases.
Guan Ning Lin, Roser Corominas, Hyun-Jun Nam, Jorge Urresti, Lilia M Iakoucheva. Methods Mol Biol 2017
4
50

Human Protein Reference Database--2009 update.
T S Keshava Prasad, Renu Goel, Kumaran Kandasamy, Shivakumar Keerthikumar, Sameer Kumar, Suresh Mathivanan, Deepthi Telikicherla, Rajesh Raju, Beema Shafreen, Abhilash Venugopal,[...]. Nucleic Acids Res 2009
50

CORUM: the comprehensive resource of mammalian protein complexes--2009.
Andreas Ruepp, Brigitte Waegele, Martin Lechner, Barbara Brauner, Irmtraud Dunger-Kaltenbach, Gisela Fobo, Goar Frishman, Corinna Montrone, H-Werner Mewes. Nucleic Acids Res 2010
479
50

A single-cell RNA-seq survey of the developmental landscape of the human prefrontal cortex.
Suijuan Zhong, Shu Zhang, Xiaoying Fan, Qian Wu, Liying Yan, Ji Dong, Haofeng Zhang, Long Li, Le Sun, Na Pan,[...]. Nature 2018
217
50

g:Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update).
Uku Raudvere, Liis Kolberg, Ivan Kuzmin, Tambet Arak, Priit Adler, Hedi Peterson, Jaak Vilo. Nucleic Acids Res 2019
749
50

Convergence of genes and cellular pathways dysregulated in autism spectrum disorders.
Dalila Pinto, Elsa Delaby, Daniele Merico, Mafalda Barbosa, Alison Merikangas, Lambertus Klei, Bhooma Thiruvahindrapuram, Xiao Xu, Robert Ziman, Zhuozhi Wang,[...]. Am J Hum Genet 2014
529
50


Human genomics. The human transcriptome across tissues and individuals.
Marta Melé, Pedro G Ferreira, Ferran Reverter, David S DeLuca, Jean Monlong, Michael Sammeth, Taylor R Young, Jakob M Goldmann, Dmitri D Pervouchine, Timothy J Sullivan,[...]. Science 2015
658
50

Accurate estimation of cell composition in bulk expression through robust integration of single-cell information.
Brandon Jew, Marcus Alvarez, Elior Rahmani, Zong Miao, Arthur Ko, Kristina M Garske, Jae Hoon Sul, Kirsi H Pietiläinen, Päivi Pajukanta, Eran Halperin. Nat Commun 2020
28
50

WNTs in the vertebrate nervous system: from patterning to neuronal connectivity.
Lorenza Ciani, Patricia C Salinas. Nat Rev Neurosci 2005
465
50

Cell-Type-Specific Profiling of Alternative Translation Identifies Regulated Protein Isoform Variation in the Mouse Brain.
Darshan Sapkota, Allison M Lake, Wei Yang, Chengran Yang, Hendrik Wesseling, Amanda Guise, Ceren Uncu, Jasbir S Dalal, Andrew W Kraft, Jin-Moo Lee,[...]. Cell Rep 2019
22
50

Synaptic, transcriptional and chromatin genes disrupted in autism.
Silvia De Rubeis, Xin He, Arthur P Goldberg, Christopher S Poultney, Kaitlin Samocha, A Erucment Cicek, Yan Kou, Li Liu, Menachem Fromer, Susan Walker,[...]. Nature 2014
50

Variation in alternative splicing across human tissues.
Gene Yeo, Dirk Holste, Gabriel Kreiman, Christopher B Burge. Genome Biol 2004
352
50

Exome sequencing supports a de novo mutational paradigm for schizophrenia.
Bin Xu, J Louw Roos, Phillip Dexheimer, Braden Boone, Brooks Plummer, Shawn Levy, Joseph A Gogos, Maria Karayiorgou. Nat Genet 2011
313
50


The Ensembl Variant Effect Predictor.
William McLaren, Laurent Gil, Sarah E Hunt, Harpreet Singh Riat, Graham R S Ritchie, Anja Thormann, Paul Flicek, Fiona Cunningham. Genome Biol 2016
50

Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing.
Qun Pan, Ofer Shai, Leo J Lee, Brendan J Frey, Benjamin J Blencowe. Nat Genet 2008
50

Getting to the Cores of Autism.
Lilia M Iakoucheva, Alysson R Muotri, Jonathan Sebat. Cell 2019
63
50


Protein interaction network of alternatively spliced isoforms from brain links genetic risk factors for autism.
Roser Corominas, Xinping Yang, Guan Ning Lin, Shuli Kang, Yun Shen, Lila Ghamsari, Martin Broly, Maria Rodriguez, Stanley Tam, Shelly A Trigg,[...]. Nat Commun 2014
82
50

Exome sequencing in sporadic autism spectrum disorders identifies severe de novo mutations.
Brian J O'Roak, Pelagia Deriziotis, Choli Lee, Laura Vives, Jerrod J Schwartz, Santhosh Girirajan, Emre Karakoc, Alexandra P Mackenzie, Sarah B Ng, Carl Baker,[...]. Nat Genet 2011
769
50

limma powers differential expression analyses for RNA-sequencing and microarray studies.
Matthew E Ritchie, Belinda Phipson, Di Wu, Yifang Hu, Charity W Law, Wei Shi, Gordon K Smyth. Nucleic Acids Res 2015
50

A highly conserved program of neuronal microexons is misregulated in autistic brains.
Manuel Irimia, Robert J Weatheritt, Jonathan D Ellis, Neelroop N Parikshak, Thomas Gonatopoulos-Pournatzis, Mariana Babor, Mathieu Quesnel-Vallières, Javier Tapial, Bushra Raj, Dave O'Hanlon,[...]. Cell 2014
273
50

RBFOX and PTBP1 proteins regulate the alternative splicing of micro-exons in human brain transcripts.
Yang I Li, Luis Sanchez-Pulido, Wilfried Haerty, Chris P Ponting. Genome Res 2015
86
50

Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks.
Elizabeth K Ruzzo, Laura Pérez-Cano, Jae-Yoon Jung, Lee-Kai Wang, Dorna Kashef-Haghighi, Chris Hartl, Chanpreet Singh, Jin Xu, Jackson N Hoekstra, Olivia Leventhal,[...]. Cell 2019
91
50

Coexpression networks implicate human midfetal deep cortical projection neurons in the pathogenesis of autism.
A Jeremy Willsey, Stephan J Sanders, Mingfeng Li, Shan Dong, Andrew T Tebbenkamp, Rebecca A Muhle, Steven K Reilly, Leon Lin, Sofia Fertuzinhos, Jeremy A Miller,[...]. Cell 2013
492
50

Integrative functional genomic analyses implicate specific molecular pathways and circuits in autism.
Neelroop N Parikshak, Rui Luo, Alice Zhang, Hyejung Won, Jennifer K Lowe, Vijayendran Chandran, Steve Horvath, Daniel H Geschwind. Cell 2013
562
50

Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism.
F Kyle Satterstrom, Jack A Kosmicki, Jiebiao Wang, Michael S Breen, Silvia De Rubeis, Joon-Yong An, Minshi Peng, Ryan Collins, Jakob Grove, Lambertus Klei,[...]. Cell 2020
369
50


Exons as units of phenotypic impact for truncating mutations in autism.
Andrew H Chiang, Jonathan Chang, Jiayao Wang, Dennis Vitkup. Mol Psychiatry 2021
3
50



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.