A citation-based method for searching scientific literature

Brian M Schilder, Towfique Raj. Hum Mol Genet 2022
Times Cited: 4







List of co-cited articles
7 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Partitioning heritability by functional annotation using genome-wide association summary statistics.
Hilary K Finucane, Brendan Bulik-Sullivan, Alexander Gusev, Gosia Trynka, Yakir Reshef, Po-Ru Loh, Verneri Anttila, Han Xu, Chongzhi Zang, Kyle Farh,[...]. Nat Genet 2015
931
50

Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.
Mike A Nalls, Cornelis Blauwendraat, Costanza L Vallerga, Karl Heilbron, Sara Bandres-Ciga, Diana Chang, Manuela Tan, Demis A Kia, Alastair J Noyce, Angli Xue,[...]. Lancet Neurol 2019
591
50

A single-cell atlas of the human substantia nigra reveals cell-specific pathways associated with neurological disorders.
Devika Agarwal, Cynthia Sandor, Viola Volpato, Tara M Caffrey, Jimena Monzón-Sandoval, Rory Bowden, Javier Alegre-Abarrategui, Richard Wade-Martins, Caleb Webber. Nat Commun 2020
60
50

The endocytic membrane trafficking pathway plays a major role in the risk of Parkinson's disease.
Sara Bandres-Ciga, Sara Saez-Atienzar, Luis Bonet-Ponce, Kimberley Billingsley, Dan Vitale, Cornelis Blauwendraat, Jesse Raphael Gibbs, Lasse Pihlstrøm, Ziv Gan-Or, Mark R Cookson,[...]. Mov Disord 2019
40
50

Common genetic variation in the HLA region is associated with late-onset sporadic Parkinson's disease.
Taye H Hamza, Cyrus P Zabetian, Albert Tenesa, Alain Laederach, Jennifer Montimurro, Dora Yearout, Denise M Kay, Kimberly F Doheny, Justin Paschall, Elizabeth Pugh,[...]. Nat Genet 2010
537
50

Genetic identification of cell types underlying brain complex traits yields insights into the etiology of Parkinson's disease.
Julien Bryois, Nathan G Skene, Thomas Folkmann Hansen, Lisette J A Kogelman, Hunna J Watson, Zijing Liu, Leo Brueggeman, Gerome Breen, Cynthia M Bulik, Ernest Arenas,[...]. Nat Genet 2020
93
50


Dysregulation of mitochondrial and proteolysosomal genes in Parkinson's disease myeloid cells.
Elisa Navarro, Evan Udine, Katia de Paiva Lopes, Madison Parks, Giulietta Riboldi, Brian M Schilder, Jack Humphrey, Gijsje J L Snijders, Ricardo A Vialle, Maojuan Zhuang,[...]. Nat Aging 2021
5
25

Genetic fine mapping and genomic annotation defines causal mechanisms at type 2 diabetes susceptibility loci.
Kyle J Gaulton, Teresa Ferreira, Yeji Lee, Anne Raimondo, Reedik Mägi, Michael E Reschen, Anubha Mahajan, Adam Locke, N William Rayner, Neil Robertson,[...]. Nat Genet 2015
261
25

Linkage disequilibrium in humans: models and data.
J K Pritchard, M Przeworski. Am J Hum Genet 2001
771
25


Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt.
Steffen Durinck, Paul T Spellman, Ewan Birney, Wolfgang Huber. Nat Protoc 2009
25

Direct Identification of Hundreds of Expression-Modulating Variants using a Multiplexed Reporter Assay.
Ryan Tewhey, Dylan Kotliar, Daniel S Park, Brandon Liu, Sarah Winnicki, Steven K Reilly, Kristian G Andersen, Tarjei S Mikkelsen, Eric S Lander, Stephen F Schaffner,[...]. Cell 2018
22
25

Bayesian refinement of association signals for 14 loci in 3 common diseases.
Julian B Maller, Gilean McVean, Jake Byrnes, Damjan Vukcevic, Kimmo Palin, Zhan Su, Joanna M M Howson, Adam Auton, Simon Myers, Andrew Morris,[...]. Nat Genet 2012
288
25

Linkage disequilibrium-dependent architecture of human complex traits shows action of negative selection.
Steven Gazal, Hilary K Finucane, Nicholas A Furlotte, Po-Ru Loh, Pier Francesco Palamara, Xuanyao Liu, Armin Schoech, Brendan Bulik-Sullivan, Benjamin M Neale, Alexander Gusev,[...]. Nat Genet 2017
155
25

The NIH Roadmap Epigenomics Mapping Consortium.
Bradley E Bernstein, John A Stamatoyannopoulos, Joseph F Costello, Bing Ren, Aleksandar Milosavljevic, Alexander Meissner, Manolis Kellis, Marco A Marra, Arthur L Beaudet, Joseph R Ecker,[...]. Nat Biotechnol 2010
25

Fine-mapping and functional studies highlight potential causal variants for rheumatoid arthritis and type 1 diabetes.
Harm-Jan Westra, Marta Martínez-Bonet, Suna Onengut-Gumuscu, Annette Lee, Yang Luo, Nikola Teslovich, Jane Worthington, Javier Martin, Tom Huizinga, Lars Klareskog,[...]. Nat Genet 2018
78
25

haploR: an R package for querying web-based annotation tools.
Ilya Y Zhbannikov, Konstantin Arbeev, Svetlana Ukraintseva, Anatoliy I Yashin. F1000Res 2017
22
25


motifbreakR: an R/Bioconductor package for predicting variant effects at transcription factor binding sites.
Simon G Coetzee, Gerhard A Coetzee, Dennis J Hazelett. Bioinformatics 2015
106
25

FINEMAP: efficient variable selection using summary data from genome-wide association studies.
Christian Benner, Chris C A Spencer, Aki S Havulinna, Veikko Salomaa, Samuli Ripatti, Matti Pirinen. Bioinformatics 2016
257
25


Evaluating the informativeness of deep learning annotations for human complex diseases.
Kushal K Dey, Bryce van de Geijn, Samuel Sungil Kim, Farhad Hormozdiari, David R Kelley, Alkes L Price. Nat Commun 2020
8
25


Genomic inflation factors under polygenic inheritance.
Jian Yang, Michael N Weedon, Shaun Purcell, Guillaume Lettre, Karol Estrada, Cristen J Willer, Albert V Smith, Erik Ingelsson, Jeffrey R O'Connell, Massimo Mangino,[...]. Eur J Hum Genet 2011
295
25

UK biobank: an open access resource for identifying the causes of a wide range of complex diseases of middle and old age.
Cathie Sudlow, John Gallacher, Naomi Allen, Valerie Beral, Paul Burton, John Danesh, Paul Downey, Paul Elliott, Jane Green, Martin Landray,[...]. PLoS Med 2015
25

IMPACT: Genomic Annotation of Cell-State-Specific Regulatory Elements Inferred from the Epigenome of Bound Transcription Factors.
Tiffany Amariuta, Yang Luo, Steven Gazal, Emma E Davenport, Bryce van de Geijn, Kazuyoshi Ishigaki, Harm-Jan Westra, Nikola Teslovich, Yukinori Okada, Kazuhiko Yamamoto,[...]. Am J Hum Genet 2019
18
25

The ENCODE Portal as an Epigenomics Resource.
Jennifer Jou, Idan Gabdank, Yunhai Luo, Khine Lin, Paul Sud, Zachary Myers, Jason A Hilton, Meenakshi S Kagda, Bonita Lam, Emma O'Neill,[...]. Curr Protoc Bioinformatics 2019
8
25

A fine-mapping study of central obesity loci incorporating functional annotation and imputation.
Xiaoyu Zhang, L Adrienne Cupples, Ching-Ti Liu. Eur J Hum Genet 2018
2
50

Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.
Anubha Mahajan, Daniel Taliun, Matthias Thurner, Neil R Robertson, Jason M Torres, N William Rayner, Anthony J Payne, Valgerdur Steinthorsdottir, Robert A Scott, Niels Grarup,[...]. Nat Genet 2018
666
25

Conditional and joint multiple-SNP analysis of GWAS summary statistics identifies additional variants influencing complex traits.
Jian Yang, Teresa Ferreira, Andrew P Morris, Sarah E Medland, Pamela A F Madden, Andrew C Heath, Nicholas G Martin, Grant W Montgomery, Michael N Weedon, Ruth J Loos,[...]. Nat Genet 2012
738
25

A global reference for human genetic variation.
Adam Auton, Lisa D Brooks, Richard M Durbin, Erik P Garrison, Hyun Min Kang, Jan O Korbel, Jonathan L Marchini, Shane McCarthy, Gil A McVean, Gonçalo R Abecasis. Nature 2015
25

Strategies for fine-mapping complex traits.
Sarah L Spain, Jeffrey C Barrett. Hum Mol Genet 2015
107
25


Prospects of Fine-Mapping Trait-Associated Genomic Regions by Using Summary Statistics from Genome-wide Association Studies.
Christian Benner, Aki S Havulinna, Marjo-Riitta Järvelin, Veikko Salomaa, Samuli Ripatti, Matti Pirinen. Am J Hum Genet 2017
86
25

LD Score regression distinguishes confounding from polygenicity in genome-wide association studies.
Brendan K Bulik-Sullivan, Po-Ru Loh, Hilary K Finucane, Stephan Ripke, Jian Yang, Nick Patterson, Mark J Daly, Alkes L Price, Benjamin M Neale. Nat Genet 2015
25

Single-cell epigenomic analyses implicate candidate causal variants at inherited risk loci for Alzheimer's and Parkinson's diseases.
M Ryan Corces, Anna Shcherbina, Soumya Kundu, Michael J Gloudemans, Laure Frésard, Jeffrey M Granja, Bryan H Louie, Tiffany Eulalio, Shadi Shams, S Tansu Bagdatli,[...]. Nat Genet 2020
75
25


Leveraging Functional-Annotation Data in Trans-ethnic Fine-Mapping Studies.
Gleb Kichaev, Bogdan Pasaniuc. Am J Hum Genet 2015
94
25

Functionally informed fine-mapping and polygenic localization of complex trait heritability.
Omer Weissbrod, Farhad Hormozdiari, Christian Benner, Ran Cui, Jacob Ulirsch, Steven Gazal, Armin P Schoech, Bryce van de Geijn, Yakir Reshef, Carla Márquez-Luna,[...]. Nat Genet 2020
45
25

Improved methods for multi-trait fine mapping of pleiotropic risk loci.
Gleb Kichaev, Megan Roytman, Ruth Johnson, Eleazar Eskin, Sara Lindström, Peter Kraft, Bogdan Pasaniuc. Bioinformatics 2017
60
25

The NIH Common Fund/Roadmap Epigenomics Program: Successes of a comprehensive consortium.
John S Satterlee, Lisa H Chadwick, Frederick L Tyson, Kim McAllister, Jill Beaver, Linda Birnbaum, Nora D Volkow, Elizabeth L Wilder, James M Anderson, Ananda L Roy. Sci Adv 2019
15
25

Fine-mapping genetic associations.
Anna Hutchinson, Jennifer Asimit, Chris Wallace. Hum Mol Genet 2020
11
25

Bayesian test for colocalisation between pairs of genetic association studies using summary statistics.
Claudia Giambartolomei, Damjan Vukcevic, Eric E Schadt, Lude Franke, Aroon D Hingorani, Chris Wallace, Vincent Plagnol. PLoS Genet 2014
817
25


The UK Biobank resource with deep phenotyping and genomic data.
Clare Bycroft, Colin Freeman, Desislava Petkova, Gavin Band, Lloyd T Elliott, Kevin Sharp, Allan Motyer, Damjan Vukcevic, Olivier Delaneau, Jared O'Connell,[...]. Nature 2018
25

Sequential regulatory activity prediction across chromosomes with convolutional neural networks.
David R Kelley, Yakir A Reshef, Maxwell Bileschi, David Belanger, Cory Y McLean, Jasper Snoek. Genome Res 2018
116
25

Disentangling the Effects of Colocalizing Genomic Annotations to Functionally Prioritize Non-coding Variants within Complex-Trait Loci.
Gosia Trynka, Harm-Jan Westra, Kamil Slowikowski, Xinli Hu, Han Xu, Barbara E Stranger, Robert J Klein, Buhm Han, Soumya Raychaudhuri. Am J Hum Genet 2015
75
25

From genome-wide associations to candidate causal variants by statistical fine-mapping.
Daniel J Schaid, Wenan Chen, Nicholas B Larson. Nat Rev Genet 2018
278
25

High-throughput identification of human SNPs affecting regulatory element activity.
Joris van Arensbergen, Ludo Pagie, Vincent D FitzPatrick, Marcel de Haas, Marijke P Baltissen, Federico Comoglio, Robin H van der Weide, Hans Teunissen, Urmo Võsa, Lude Franke,[...]. Nat Genet 2019
82
25


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.