A citation-based method for searching scientific literature


List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


HISAT: a fast spliced aligner with low memory requirements.
Daehwan Kim, Ben Langmead, Steven L Salzberg. Nat Methods 2015
50

The GEM mapper: fast, accurate and versatile alignment by filtration.
Santiago Marco-Sola, Michael Sammeth, Roderic Guigó, Paolo Ribeca. Nat Methods 2012
319
50

Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
50

Bisulfite-free direct detection of 5-methylcytosine and 5-hydroxymethylcytosine at base resolution.
Yibin Liu, Paulina Siejka-Zielińska, Gergana Velikova, Ying Bi, Fang Yuan, Marketa Tomkova, Chunsen Bai, Lei Chen, Benjamin Schuster-Böckler, Chun-Xiao Song. Nat Biotechnol 2019
137
50


DNA methylation in mammals.
En Li, Yi Zhang. Cold Spring Harb Perspect Biol 2014
472
50


Evaluation of whole-genome DNA methylation sequencing library preparation protocols.
Jacob Morrison, Julie M Koeman, Benjamin K Johnson, Kelly K Foy, Ian Beddows, Wanding Zhou, David W Chesla, Larissa L Rossell, Emily J Siegwald, Marie Adams,[...]. Epigenetics Chromatin 2021
7
50


Highly integrated single-base resolution maps of the epigenome in Arabidopsis.
Ryan Lister, Ronan C O'Malley, Julian Tonti-Filippini, Brian D Gregory, Charles C Berry, A Harvey Millar, Joseph R Ecker. Cell 2008
50


Size-tagged preferred ends in maternal plasma DNA shed light on the production mechanism and show utility in noninvasive prenatal testing.
Kun Sun, Peiyong Jiang, Ada I C Wong, Yvonne K Y Cheng, Suk Hang Cheng, Haiqiang Zhang, K C Allen Chan, Tak Y Leung, Rossa W K Chiu, Y M Dennis Lo. Proc Natl Acad Sci U S A 2018
75
50

Subtype-GAN: a deep learning approach for integrative cancer subtyping of multi-omics data.
Hai Yang, Rui Chen, Dongdong Li, Zhe Wang. Bioinformatics 2021
13
50

BSMAP: whole genome bisulfite sequence MAPping program.
Yuanxin Xi, Wei Li. BMC Bioinformatics 2009
653
50

DNA methylation: roles in mammalian development.
Zachary D Smith, Alexander Meissner. Nat Rev Genet 2013
50

Plasma DNA tissue mapping by genome-wide methylation sequencing for noninvasive prenatal, cancer, and transplantation assessments.
Kun Sun, Peiyong Jiang, K C Allen Chan, John Wong, Yvonne K Y Cheng, Raymond H S Liang, Wai-kong Chan, Edmond S K Ma, Stephen L Chan, Suk Hang Cheng,[...]. Proc Natl Acad Sci U S A 2015
382
50

Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning.
Shawn J Cokus, Suhua Feng, Xiaoyu Zhang, Zugen Chen, Barry Merriman, Christian D Haudenschild, Sriharsa Pradhan, Stanley F Nelson, Matteo Pellegrini, Steven E Jacobsen. Nature 2008
50

A comparison of gene expression and DNA methylation patterns across tissues and species.
Lauren E Blake, Julien Roux, Irene Hernando-Herraez, Nicholas E Banovich, Raquel Garcia Perez, Chiaowen Joyce Hsiao, Ittai Eres, Claudia Cuevas, Tomas Marques-Bonet, Yoav Gilad. Genome Res 2020
53
50

A novel NGS library preparation method to characterize native termini of fragmented DNA.
Kelly M Harkins, Nathan K Schaefer, Christopher J Troll, Varsha Rao, Joshua Kapp, Colin Naughton, Beth Shapiro, Richard E Green. Nucleic Acids Res 2020
5
50


DNA methylation and the preservation of cell identity.
Ozren Bogdanović, Ryan Lister. Curr Opin Genet Dev 2017
74
50

Noninvasive detection of cancer-associated genome-wide hypomethylation and copy number aberrations by plasma DNA bisulfite sequencing.
K C Allen Chan, Peiyong Jiang, Carol W M Chan, Kun Sun, John Wong, Edwin P Hui, Stephen L Chan, Wing Cheong Chan, David S C Hui, Simon S M Ng,[...]. Proc Natl Acad Sci U S A 2013
253
50

BS-Seeker3: ultrafast pipeline for bisulfite sequencing.
Kevin Yu Yuan Huang, Yan-Jiun Huang, Pao-Yang Chen. BMC Bioinformatics 2018
21
50

Msuite: A High-Performance and Versatile DNA Methylation Data-Analysis Toolkit.
Kun Sun, Lishi Li, Li Ma, Yu Zhao, Lin Deng, Huating Wang, Hao Sun. Patterns (N Y) 2020
3
50


Bioinformatic tools for DNA methylation and histone modification: A survey.
Nasibeh Chenarani, Abbasali Emamjomeh, Abdollah Allahverdi, SeyedAli Mirmostafa, Mohammad Hossein Afsharinia, Javad Zahiri. Genomics 2021
4
50

DNA methylation and its basic function.
Lisa D Moore, Thuc Le, Guoping Fan. Neuropsychopharmacology 2013
50

Structure-function relationships of PEDF.
T Kawaguchi, S-I Yamagishi, M Sata. Curr Mol Med 2010
47
50

Tumour budding, uPA and PAI-1 are associated with aggressive behaviour in colon cancer.
B Märkl, I Renk, D V Oruzio, H Jähnig, G Schenkirsch, C Schöler, W Ehret, H M Arnholdt, M Anthuber, H Spatz. J Surg Oncol 2010
36
50

Looking at the proteases from a simple perspective.
Helena C Castro, Paula A Abreu, Reinaldo B Geraldo, Rita C A Martins, Ruben dos Santos, Natália I V Loureiro, Lúcio M Cabral, Carlos R Rodrigues. J Mol Recognit 2011
19
50


Dietary salt intake and risk of gastric cancer.
Lanfranco D'Elia, Ferruccio Galletti, Pasquale Strazzullo. Cancer Treat Res 2014
64
50

Global Burden of 5 Major Types of Gastrointestinal Cancer.
Melina Arnold, Christian C Abnet, Rachel E Neale, Jerome Vignat, Edward L Giovannucci, Katherine A McGlynn, Freddie Bray. Gastroenterology 2020
366
50

Elderly gastrointestinal cancer patients and radiochemotherapy: a review.
F Fiorica, A Stefanelli, G Pascale, R Fisichella. Clin Ter 2014
3
50

Apoptosis as anticancer mechanism: function and dysfunction of its modulators and targeted therapeutic strategies.
Giuseppa Pistritto, Daniela Trisciuoglio, Claudia Ceci, Alessia Garufi, Gabriella D'Orazi. Aging (Albany NY) 2016
621
50

Plasminogen activator inhibitor 1 in acute coronary syndromes.
Marin Pavlov, Ivana Ćelap. Clin Chim Acta 2019
4
50

Characterization of PEDF: a multi-functional serpin family protein.
S Filleur, T Nelius, W de Riese, R C Kennedy. J Cell Biochem 2009
163
50

Direct-S: a directed mass spectrometry method for biomarker verification in native serum.
Hong-Rui Yin, Li-Qi Xie, Ye Xu, San-Jun Cai, Jun Yao, Peng-Yuan Yang, Hao-Jie Lu. Analyst 2015
1
100

Impact of mesenchymal stem cell secreted PAI-1 on colon cancer cell migration and proliferation.
Niamh M Hogan, Myles R Joyce, J Mary Murphy, Frank P Barry, Timothy O'Brien, Michael J Kerin, Roisin M Dwyer. Biochem Biophys Res Commun 2013
35
50

PAI-1 - a potential therapeutic target in cancer.
Peter A Andreasen. Curr Drug Targets 2007
60
50

An overview of the serpin superfamily.
Ruby H P Law, Qingwei Zhang, Sheena McGowan, Ashley M Buckle, Gary A Silverman, Wilson Wong, Carlos J Rosado, Chris G Langendorf, Rob N Pike, Philip I Bird,[...]. Genome Biol 2006
428
50

Obesity and Energy Balance in GI Cancer.
Justin C Brown, Jeffrey A Meyerhardt. J Clin Oncol 2016
40
50

The Evolution of Carcinogenesis.
Jeffrey M Peters, Frank J Gonzalez. Toxicol Sci 2018
15
50


Elevated maspin expression is associated with better overall survival in esophageal squamous cell carcinoma (ESCC).
Yang Wang, Shijie Sheng, Jianzhi Zhang, Sijana Dzinic, Shaolei Li, Fang Fang, Nan Wu, Qingfeng Zheng, Yue Yang. PLoS One 2013
17
50


Gastrointestinal cancer classification and prognostication from histology using deep learning: Systematic review.
Sara Kuntz, Eva Krieghoff-Henning, Jakob N Kather, Tanja Jutzi, Julia Höhn, Lennard Kiehl, Achim Hekler, Elizabeth Alwers, Christof von Kalle, Stefan Fröhling,[...]. Eur J Cancer 2021
21
50

Vaspin inhibits kallikrein 7 by serpin mechanism.
John T Heiker, Nora Klöting, Peter Kovacs, E Bartholomeus Kuettner, Norbert Sträter, Stephan Schultz, Matthias Kern, Michael Stumvoll, Matthias Blüher, Annette G Beck-Sickinger. Cell Mol Life Sci 2013
86
50

PAI-1, progress in understanding the clinical problem and its aetiology.
Takayuki Iwaki, Tetsumei Urano, Kazuo Umemura. Br J Haematol 2012
108
50

The contrary intracellular and extracellular functions of PEDF in HCC development.
Cen Li, Zhijian Huang, Liuqing Zhu, Xianhuan Yu, Tianxiao Gao, Juan Feng, Honghai Hong, Haofan Yin, Ti Zhou, Weiwei Qi,[...]. Cell Death Dis 2019
8
50


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.