A citation-based method for searching scientific literature

Seth Blackshaw, Sanjiv Harpavat, Jeff Trimarchi, Li Cai, Haiyan Huang, Winston P Kuo, Griffin Weber, Kyungjoon Lee, Rebecca E Fraioli, Seo-Hee Cho, Rachel Yung, Elizabeth Asch, Lucila Ohno-Machado, Wing H Wong, Constance L Cepko. PLoS Biol 2004
Times Cited: 447







List of co-cited articles
1090 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Single-cell transcriptomic atlas of the human retina identifies cell types associated with age-related macular degeneration.
Madhvi Menon, Shahin Mohammadi, Jose Davila-Velderrain, Brittany A Goods, Tanina D Cadwell, Yu Xing, Anat Stemmer-Rachamimov, Alex K Shalek, John Christopher Love, Manolis Kellis,[...]. Nat Commun 2019
96
6

The major cell populations of the mouse retina.
C J Jeon, E Strettoi, R H Masland. J Neurosci 1998
921
5

Islet-1 controls the differentiation of retinal bipolar and cholinergic amacrine cells.
Yasser Elshatory, Drew Everhart, Min Deng, Xiaoling Xie, Robert B Barlow, Lin Gan. J Neurosci 2007
137
5

The neuronal organization of the retina.
Richard H Masland. Neuron 2012
470
5

Transcriptional code and disease map for adult retinal cell types.
Sandra Siegert, Erik Cabuy, Brigitte Gross Scherf, Hubertus Kohler, Satchidananda Panda, Yun-Zheng Le, Hans Jörg Fehling, Dimos Gaidatzis, Michael B Stadler, Botond Roska. Nat Neurosci 2012
184
5

Retinal transplantation of photoreceptors results in donor-host cytoplasmic exchange.
Tiago Santos-Ferreira, Sílvia Llonch, Oliver Borsch, Kai Postel, Jochen Haas, Marius Ader. Nat Commun 2016
155
5

Transplanted photoreceptor precursors transfer proteins to host photoreceptors by a mechanism of cytoplasmic fusion.
Mandeep S Singh, Jasmin Balmer, Alun R Barnard, Sher A Aslam, Daniela Moralli, Catherine M Green, Alona Barnea-Cramer, Isabel Duncan, Robert E MacLaren. Nat Commun 2016
118
5


Natural RNA circles function as efficient microRNA sponges.
Thomas B Hansen, Trine I Jensen, Bettina H Clausen, Jesper B Bramsen, Bente Finsen, Christian K Damgaard, Jørgen Kjems. Nature 2013
5

Competition between a noncoding exon and introns: Gomafu contains tandem UACUAAC repeats and associates with splicing factor-1.
Hitomi Tsuiji, Rei Yoshimoto, Yuko Hasegawa, Masaaki Furuno, Minoru Yoshida, Shinichi Nakagawa. Genes Cells 2011
105
5


Natural antisense transcripts associated with genes involved in eye development.
Giovanna Alfano, Carmen Vitiello, Cristina Caccioppoli, Tiziana Caramico, Antonietta Carola, Michael J Szego, Roderick R McInnes, Alberto Auricchio, Sandro Banfi. Hum Mol Genet 2005
89
5

Wnt/β-catenin-signaling and the formation of Müller glia-derived progenitors in the chick retina.
Donika Gallina, Isabella Palazzo, Lillia Steffenson, Levi Todd, Andy J Fischer. Dev Neurobiol 2016
21
23


Leptin and IL-6 family cytokines synergize to stimulate Müller glia reprogramming and retina regeneration.
Xiao-Feng Zhao, Jin Wan, Curtis Powell, Rajesh Ramachandran, Martin G Myers, Daniel Goldman. Cell Rep 2014
84
5

A comparative analysis of Müller glia-mediated regeneration in the vertebrate retina.
Donika Gallina, Levi Todd, Andy J Fischer. Exp Eye Res 2014
56
8

Notch signaling regulates regeneration in the avian retina.
Susan Hayes, Branden R Nelson, Brian Buckingham, Thomas A Reh. Dev Biol 2007
87
5

Wnt/β-catenin signaling triggers neuron reprogramming and regeneration in the mouse retina.
Daniela Sanges, Neus Romo, Giacoma Simonte, Umberto Di Vicino, Ariadna Diaz Tahoces, Eduardo Fernández, Maria Pia Cosma. Cell Rep 2013
72
6

MIO-M1 cells and similar muller glial cell lines derived from adult human retina exhibit neural stem cell characteristics.
Jean M Lawrence, Shweta Singhal, Bhairavi Bhatia, David J Keegan, Thomas A Reh, Philip J Luthert, Peng T Khaw, Gloria Astrid Limb. Stem Cells 2007
183
5



Molecular heterogeneity of developing retinal ganglion and amacrine cells revealed through single cell gene expression profiling.
Jeffrey M Trimarchi, Michael B Stadler, Botond Roska, Nathan Billings, Ben Sun, Brandon Bartch, Constance L Cepko. J Comp Neurol 2007
126
5

HTSeq--a Python framework to work with high-throughput sequencing data.
Simon Anders, Paul Theodor Pyl, Wolfgang Huber. Bioinformatics 2015
5

A thyroid hormone receptor that is required for the development of green cone photoreceptors.
L Ng, J B Hurley, B Dierks, M Srinivas, C Saltó, B Vennström, T A Reh, D Forrest. Nat Genet 2001
392
5

Generation of three-dimensional retinal tissue with functional photoreceptors from human iPSCs.
Xiufeng Zhong, Christian Gutierrez, Tian Xue, Christopher Hampton, M Natalia Vergara, Li-Hui Cao, Ann Peters, Tea Soon Park, Elias T Zambidis, Jason S Meyer,[...]. Nat Commun 2014
475
5

Cells previously identified as retinal stem cells are pigmented ciliary epithelial cells.
Samantha A Cicero, Dianna Johnson, Steve Reyntjens, Sharon Frase, Samuel Connell, Lionel M L Chow, Suzanne J Baker, Brian P Sorrentino, Michael A Dyer. Proc Natl Acad Sci U S A 2009
156
5

Crx, a novel Otx-like paired-homeodomain protein, binds to and transactivates photoreceptor cell-specific genes.
S Chen, Q L Wang, Z Nie, H Sun, G Lennon, N G Copeland, D J Gilbert, N A Jenkins, D J Zack. Neuron 1997
550
5

Ocular retardation mouse caused by Chx10 homeobox null allele: impaired retinal progenitor proliferation and bipolar cell differentiation.
M Burmeister, J Novak, M Y Liang, S Basu, L Ploder, N L Hawes, D Vidgen, F Hoover, D Goldman, V I Kalnins,[...]. Nat Genet 1996
417
5

Requirement for Bhlhb5 in the specification of amacrine and cone bipolar subtypes in mouse retina.
Liang Feng, Xiaoling Xie, Pushkar S Joshi, Zhiyong Yang, Koji Shibasaki, Robert L Chow, Lin Gan. Development 2006
104
5

Functional roles of Otx2 transcription factor in postnatal mouse retinal development.
Chieko Koike, Akihiro Nishida, Shinji Ueno, Hiromitsu Saito, Rikako Sanuki, Shigeru Sato, Akiko Furukawa, Shinichi Aizawa, Isao Matsuo, Noboru Suzuki,[...]. Mol Cell Biol 2007
135
5

Epigenomic landscapes of retinal rods and cones.
Alisa Mo, Chongyuan Luo, Fred P Davis, Eran A Mukamel, Gilbert L Henry, Joseph R Nery, Mark A Urich, Serge Picard, Ryan Lister, Sean R Eddy,[...]. Elife 2016
77
6

Long non-coding RNA MALAT1 regulates retinal neurodegeneration through CREB signaling.
Jin Yao, Xiao-Qun Wang, Yu-Jie Li, Kun Shan, Hong Yang, Yang-Ning-Zhi Wang, Mu-Di Yao, Chang Liu, Xiu-Miao Li, Yi Shen,[...]. EMBO Mol Med 2016
65
7

The long noncoding RNA Vax2os1 controls the cell cycle progression of photoreceptor progenitors in the mouse retina.
Nicola Meola, Mariateresa Pizzo, Giovanna Alfano, Enrico Maria Surace, Sandro Banfi. RNA 2012
76
6


Requirement for math5 in the development of retinal ganglion cells.
S W Wang, B S Kim, K Ding, H Wang, D Sun, R L Johnson, W H Klein, L Gan. Genes Dev 2001
369
5

Math5 encodes a murine basic helix-loop-helix transcription factor expressed during early stages of retinal neurogenesis.
N L Brown, S Kanekar, M L Vetter, P K Tucker, D L Gemza, T Glaser. Development 1998
255
5


Math5 is required for both early retinal neuron differentiation and cell cycle progression.
Tien T Le, Emily Wroblewski, Sima Patel, Amy N Riesenberg, Nadean L Brown. Dev Biol 2006
80
6

Long noncoding RNA-MEG3 is involved in diabetes mellitus-related microvascular dysfunction.
Gui-Zhen Qiu, Wei Tian, Hai-Tao Fu, Chao-Peng Li, Ban Liu. Biochem Biophys Res Commun 2016
127
5

Long non-coding RNA MALAT1 regulates hyperglycaemia induced inflammatory process in the endothelial cells.
Prasanth Puthanveetil, Shali Chen, Biao Feng, Anirudh Gautam, Subrata Chakrabarti. J Cell Mol Med 2015
262
5

MALAT1: An Epigenetic Regulator of Inflammation in Diabetic Retinopathy.
Saumik Biswas, Anu Alice Thomas, Shali Chen, Erfan Aref-Eshghi, Biao Feng, John Gonder, Bekim Sadikovic, Subrata Chakrabarti. Sci Rep 2018
75
6

Controlled expression of transgenes introduced by in vivo electroporation.
Takahiko Matsuda, Constance L Cepko. Proc Natl Acad Sci U S A 2007
433
5

Gene regulation logic in retinal ganglion cell development: Isl1 defines a critical branch distinct from but overlapping with Pou4f2.
Xiuqian Mu, Xueyao Fu, Phillip D Beremand, Terry L Thomas, William H Klein. Proc Natl Acad Sci U S A 2008
107
5

Ptf1a determines horizontal and amacrine cell fates during mouse retinal development.
Yoshio Fujitani, Shuko Fujitani, Huijun Luo, Feng Qiu, Jared Burlison, Qiaoming Long, Yoshiya Kawaguchi, Helena Edlund, Raymond J MacDonald, Takahisa Furukawa,[...]. Development 2006
172
5

Transcription factors SOX4 and SOX11 function redundantly to regulate the development of mouse retinal ganglion cells.
Ying Jiang, Qian Ding, Xiaoling Xie, Richard T Libby, Veronique Lefebvre, Lin Gan. J Biol Chem 2013
74
6

Foxn4 controls the genesis of amacrine and horizontal cells by retinal progenitors.
Shengguo Li, Zeqian Mo, Xuejie Yang, Sandy M Price, Michael M Shen, Mengqing Xiang. Neuron 2004
180
5

Long noncoding RNAs and human disease.
Orly Wapinski, Howard Y Chang. Trends Cell Biol 2011
5


Reversed graph embedding resolves complex single-cell trajectories.
Xiaojie Qiu, Qi Mao, Ying Tang, Li Wang, Raghav Chawla, Hannah A Pliner, Cole Trapnell. Nat Methods 2017
5



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.