A citation-based method for searching scientific literature

Feng Zhang, Matthias Prigge, Florent Beyrière, Satoshi P Tsunoda, Joanna Mattis, Ofer Yizhar, Peter Hegemann, Karl Deisseroth. Nat Neurosci 2008
Times Cited: 317







List of co-cited articles
1006 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Structural mechanisms of selectivity and gating in anion channelrhodopsins.
Hideaki E Kato, Yoon Seok Kim, Joseph M Paggi, Kathryn E Evans, William E Allen, Claire Richardson, Keiichi Inoue, Shota Ito, Charu Ramakrishnan, Lief E Fenno,[...]. Nature 2018
31
22


Amygdala circuitry mediating reversible and bidirectional control of anxiety.
Kay M Tye, Rohit Prakash, Sung-Yon Kim, Lief E Fenno, Logan Grosenick, Hosniya Zarabi, Kimberly R Thompson, Viviana Gradinaru, Charu Ramakrishnan, Karl Deisseroth. Nature 2011
699
6


Millisecond-timescale optical control of neural dynamics in the nonhuman primate brain.
Xue Han, Xiaofeng Qian, Jacob G Bernstein, Hui-Hui Zhou, Giovanni Talei Franzesi, Patrick Stern, Roderick T Bronson, Ann M Graybiel, Robert Desimone, Edward S Boyden. Neuron 2009
308
6

Parvalbumin neurons and gamma rhythms enhance cortical circuit performance.
Vikaas S Sohal, Feng Zhang, Ofer Yizhar, Karl Deisseroth. Nature 2009
6

Cholinergic interneurons control local circuit activity and cocaine conditioning.
Ilana B Witten, Shih-Chun Lin, Matthew Brodsky, Rohit Prakash, Ilka Diester, Polina Anikeeva, Viviana Gradinaru, Charu Ramakrishnan, Karl Deisseroth. Science 2010
308
6

A Designer AAV Variant Permits Efficient Retrograde Access to Projection Neurons.
D Gowanlock R Tervo, Bum-Yeol Hwang, Sarada Viswanathan, Thomas Gaj, Maria Lavzin, Kimberly D Ritola, Sarah Lindo, Susan Michael, Elena Kuleshova, David Ojala,[...]. Neuron 2016
437
6

Restoring the ON Switch in Blind Retinas: Opto-mGluR6, a Next-Generation, Cell-Tailored Optogenetic Tool.
Michiel van Wyk, Justyna Pielecka-Fortuna, Siegrid Löwel, Sonja Kleinlogel. PLoS Biol 2015
87
6

Cerebellar Directed Optogenetic Intervention Inhibits Spontaneous Hippocampal Seizures in a Mouse Model of Temporal Lobe Epilepsy.
Esther Krook-Magnuson, Gergely G Szabo, Caren Armstrong, Mikko Oijala, Ivan Soltesz. eNeuro 2014
111
6

Closed-loop optogenetic control of thalamus as a tool for interrupting seizures after cortical injury.
Jeanne T Paz, Thomas J Davidson, Eric S Frechette, Bruno Delord, Isabel Parada, Kathy Peng, Karl Deisseroth, John R Huguenard. Nat Neurosci 2013
305
6

Simultaneous cellular-resolution optical perturbation and imaging of place cell firing fields.
John Peter Rickgauer, Karl Deisseroth, David W Tank. Nat Neurosci 2014
174
6

Channelrhodopsin-2-XXL, a powerful optogenetic tool for low-light applications.
Alexej Dawydow, Ronnie Gueta, Dmitrij Ljaschenko, Sybille Ullrich, Moritz Hermann, Nadine Ehmann, Shiqiang Gao, André Fiala, Tobias Langenhan, Georg Nagel,[...]. Proc Natl Acad Sci U S A 2014
86
6

Transient protonation changes in channelrhodopsin-2 and their relevance to channel gating.
Víctor A Lórenz-Fonfría, Tom Resler, Nils Krause, Melanie Nack, Michael Gossing, Gabriele Fischer von Mollard, Christian Bamann, Ernst Bamberg, Ramona Schlesinger, Joachim Heberle. Proc Natl Acad Sci U S A 2013
98
6

Photocurrent attenuation by a single polar-to-nonpolar point mutation of channelrhodopsin-2.
Yuka Sugiyama, Hongxia Wang, Takuya Hikima, Minami Sato, Jun Kuroda, Tetsuo Takahashi, Toru Ishizuka, Hiromu Yawo. Photochem Photobiol Sci 2009
44
13

Bioinformatic and mutational analysis of channelrhodopsin-2 protein cation-conducting pathway.
Anna Pia Plazzo, Nicola De Franceschi, Francesca Da Broi, Francesco Zonta, Maria Federica Sanasi, Francesco Filippini, Marco Mongillo. J Biol Chem 2012
26
23


Atomistic design of microbial opsin-based blue-shifted optogenetics tools.
Hideaki E Kato, Motoshi Kamiya, Seiya Sugo, Jumpei Ito, Reiya Taniguchi, Ayaka Orito, Kunio Hirata, Ayumu Inutsuka, Akihiro Yamanaka, Andrés D Maturana,[...]. Nat Commun 2015
44
13

Genetically encoded indicators of neuronal activity.
Michael Z Lin, Mark J Schnitzer. Nat Neurosci 2016
268
6

An optimized fluorescent probe for visualizing glutamate neurotransmission.
Jonathan S Marvin, Bart G Borghuis, Lin Tian, Joseph Cichon, Mark T Harnett, Jasper Akerboom, Andrew Gordus, Sabine L Renninger, Tsai-Wen Chen, Cornelia I Bargmann,[...]. Nat Methods 2013
447
6

Modeling the Spatiotemporal Dynamics of Light and Heat Propagation for In Vivo Optogenetics.
Joseph M Stujenske, Timothy Spellman, Joshua A Gordon. Cell Rep 2015
152
6

An optogenetic toolbox designed for primates.
Ilka Diester, Matthew T Kaufman, Murtaza Mogri, Ramin Pashaie, Werapong Goo, Ofer Yizhar, Charu Ramakrishnan, Karl Deisseroth, Krishna V Shenoy. Nat Neurosci 2011
280
6

Beyond the brain: Optogenetic control in the spinal cord and peripheral nervous system.
Kate L Montgomery, Shrivats M Iyer, Amelia J Christensen, Karl Deisseroth, Scott L Delp. Sci Transl Med 2016
77
7

Phasic firing in dopaminergic neurons is sufficient for behavioral conditioning.
Hsing-Chen Tsai, Feng Zhang, Antoine Adamantidis, Garret D Stuber, Antonello Bonci, Luis de Lecea, Karl Deisseroth. Science 2009
736
6

Remote Regulation of Membrane Channel Activity by Site-Specific Localization of Lanthanide-Doped Upconversion Nanocrystals.
Xiangzhao Ai, Linna Lyu, Yang Zhang, Yanxia Tang, Jing Mu, Fang Liu, Yixi Zhou, Zhenghong Zuo, Gang Liu, Bengang Xing. Angew Chem Int Ed Engl 2017
59
10


Optogenetics. Engineering of a light-gated potassium channel.
Cristian Cosentino, Laura Alberio, Sabrina Gazzarrini, Marco Aquila, Edoardo Romano, Solei Cermenati, Paolo Zuccolini, Jan Petersen, Monica Beltrame, James L Van Etten,[...]. Science 2015
74
8

Allosteric control of an ionotropic glutamate receptor with an optical switch.
Matthew Volgraf, Pau Gorostiza, Rika Numano, Richard H Kramer, Ehud Y Isacoff, Dirk Trauner. Nat Chem Biol 2006
378
6

Memory retrieval by activating engram cells in mouse models of early Alzheimer's disease.
Dheeraj S Roy, Autumn Arons, Teryn I Mitchell, Michele Pignatelli, Tomás J Ryan, Susumu Tonegawa. Nature 2016
213
6

Stimulating cardiac muscle by light: cardiac optogenetics by cell delivery.
Zhiheng Jia, Virginijus Valiunas, Zongju Lu, Harold Bien, Huilin Liu, Hong-Zhang Wang, Barbara Rosati, Peter R Brink, Ira S Cohen, Emilia Entcheva. Circ Arrhythm Electrophysiol 2011
120
6

Quasi-Continuous Wave Near-Infrared Excitation of Upconversion Nanoparticles for Optogenetic Manipulation of C. elegans.
Akshaya Bansal, Haichun Liu, Muthu Kumara Gnanasammandhan Jayakumar, Stefan Andersson-Engels, Yong Zhang. Small 2016
38
15

Controlling upconversion nanocrystals for emerging applications.
Bo Zhou, Bingyang Shi, Dayong Jin, Xiaogang Liu. Nat Nanotechnol 2015
410
6

Chemogenetics revealed: DREADD occupancy and activation via converted clozapine.
Juan L Gomez, Jordi Bonaventura, Wojciech Lesniak, William B Mathews, Polina Sysa-Shah, Lionel A Rodriguez, Randall J Ellis, Christopher T Richie, Brandon K Harvey, Robert F Dannals,[...]. Science 2017
437
6

DREADDs for Neuroscientists.
Bryan L Roth. Neuron 2016
574
6

Microbial Rhodopsins: Diversity, Mechanisms, and Optogenetic Applications.
Elena G Govorunova, Oleg A Sineshchekov, Hai Li, John L Spudich. Annu Rev Biochem 2017
117
6

A natural light-driven inward proton pump.
Keiichi Inoue, Shota Ito, Yoshitaka Kato, Yurika Nomura, Mikihiro Shibata, Takayuki Uchihashi, Satoshi P Tsunoda, Hideki Kandori. Nat Commun 2016
55
10

Crystal structure of the red light-activated channelrhodopsin Chrimson.
Kazumasa Oda, Johannes Vierock, Satomi Oishi, Silvia Rodriguez-Rozada, Reiya Taniguchi, Keitaro Yamashita, J Simon Wiegert, Tomohiro Nishizawa, Peter Hegemann, Osamu Nureki. Nat Commun 2018
37
16

Cortical layer-specific critical dynamics triggering perception.
James H Marshel, Yoon Seok Kim, Timothy A Machado, Sean Quirin, Brandon Benson, Jonathan Kadmon, Cephra Raja, Adelaida Chibukhchyan, Charu Ramakrishnan, Masatoshi Inoue,[...]. Science 2019
103
6

Optogenetically induced seizure and the longitudinal hippocampal network dynamics.
Shin-Ichiro Osawa, Masaki Iwasaki, Ryosuke Hosaka, Yoshiya Matsuzaka, Hiroshi Tomita, Toru Ishizuka, Eriko Sugano, Eiichi Okumura, Hiromu Yawo, Nobukazu Nakasato,[...]. PLoS One 2013
49
10

Optogenetic tools for analyzing the neural circuits of behavior.
Jacob G Bernstein, Edward S Boyden. Trends Cogn Sci 2011
149
5

Driving fast-spiking cells induces gamma rhythm and controls sensory responses.
Jessica A Cardin, Marie Carlén, Konstantinos Meletis, Ulf Knoblich, Feng Zhang, Karl Deisseroth, Li-Huei Tsai, Christopher I Moore. Nature 2009
5


Two-photon optogenetics of dendritic spines and neural circuits.
Adam M Packer, Darcy S Peterka, Jan J Hirtz, Rohit Prakash, Karl Deisseroth, Rafael Yuste. Nat Methods 2012
135
5

GFP-specific CD8 T cells enable targeted cell depletion and visualization of T-cell interactions.
Judith Agudo, Albert Ruzo, Eun Sook Park, Robert Sweeney, Veronika Kana, Meng Wu, Yong Zhao, Dieter Egli, Miriam Merad, Brian D Brown. Nat Biotechnol 2015
66
7

Light-induced activation of distinct modulatory neurons triggers appetitive or aversive learning in Drosophila larvae.
Christian Schroll, Thomas Riemensperger, Daniel Bucher, Julia Ehmer, Thomas Völler, Karen Erbguth, Bertram Gerber, Thomas Hendel, Georg Nagel, Erich Buchner,[...]. Curr Biol 2006
383
5

Imaging neural activity in worms, flies and mice with improved GCaMP calcium indicators.
Lin Tian, S Andrew Hires, Tianyi Mao, Daniel Huber, M Eugenia Chiappe, Sreekanth H Chalasani, Leopoldo Petreanu, Jasper Akerboom, Sean A McKinney, Eric R Schreiter,[...]. Nat Methods 2009
5

Optogenetic stimulation of a hippocampal engram activates fear memory recall.
Xu Liu, Steve Ramirez, Petti T Pang, Corey B Puryear, Arvind Govindarajan, Karl Deisseroth, Susumu Tonegawa. Nature 2012
702
5

Anion channelrhodopsins for inhibitory cardiac optogenetics.
Elena G Govorunova, Shane R Cunha, Oleg A Sineshchekov, John L Spudich. Sci Rep 2016
32
15

Photochemical gating of heterologous ion channels: remote control over genetically designated populations of neurons.
Boris V Zemelman, Nasri Nesnas, Georgia A Lee, Gero Miesenbock. Proc Natl Acad Sci U S A 2003
150
5

Wireless magnetothermal deep brain stimulation.
Ritchie Chen, Gabriela Romero, Michael G Christiansen, Alan Mohr, Polina Anikeeva. Science 2015
220
5


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.