A citation-based method for searching scientific literature

Laura Winchester, Christopher Yau, Jiannis Ragoussis. Brief Funct Genomic Proteomic 2009
Times Cited: 137







List of co-cited articles
639 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Copy number polymorphism in Fcgr3 predisposes to glomerulonephritis in rats and humans.
Timothy J Aitman, Rong Dong, Timothy J Vyse, Penny J Norsworthy, Michelle D Johnson, Jennifer Smith, Jonathan Mangion, Cheri Roberton-Lowe, Amy J Marshall, Enrico Petretto,[...]. Nature 2006
519
7

Duplication of FGF3, FGF4, FGF19 and ORAOV1 causes hair ridge and predisposition to dermoid sinus in Ridgeback dogs.
Nicolette H C Salmon Hillbertz, Magnus Isaksson, Elinor K Karlsson, Eva Hellmén, Gerli Rosengren Pielberg, Peter Savolainen, Claire M Wade, Henrik von Euler, Ulla Gustafson, Ake Hedhammar,[...]. Nat Genet 2007
134
7

Linkage disequilibrium and heritability of copy-number polymorphisms within duplicated regions of the human genome.
Devin P Locke, Andrew J Sharp, Steven A McCarroll, Sean D McGrath, Tera L Newman, Ze Cheng, Stuart Schwartz, Donna G Albertson, Daniel Pinkel, David M Altshuler,[...]. Am J Hum Genet 2006
238
7

Finding the missing heritability of complex diseases.
Teri A Manolio, Francis S Collins, Nancy J Cox, David B Goldstein, Lucia A Hindorff, David J Hunter, Mark I McCarthy, Erin M Ramos, Lon R Cardon, Aravinda Chakravarti,[...]. Nature 2009
7

Human copy number variation and complex genetic disease.
Santhosh Girirajan, Catarina D Campbell, Evan E Eichler. Annu Rev Genet 2011
207
7

A copy number variation morbidity map of developmental delay.
Gregory M Cooper, Bradley P Coe, Santhosh Girirajan, Jill A Rosenfeld, Tiffany H Vu, Carl Baker, Charles Williams, Heather Stalker, Rizwan Hamid, Vickie Hannig,[...]. Nat Genet 2011
807
7

Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.
M Ashburner, C A Ball, J A Blake, D Botstein, H Butler, J M Cherry, A P Davis, K Dolinski, S S Dwight, J T Eppig,[...]. Nat Genet 2000
7

High resolution discovery and confirmation of copy number variants in 90 Yoruba Nigerians.
Hajime Matsuzaki, Pei-Hua Wang, Jing Hu, Rich Rava, Glenn K Fu. Genome Biol 2009
48
14


Mechanisms of change in gene copy number.
P J Hastings, James R Lupski, Susan M Rosenberg, Grzegorz Ira. Nat Rev Genet 2009
723
7


A copy number variation map of the human genome.
Mehdi Zarrei, Jeffrey R MacDonald, Daniele Merico, Stephen W Scherer. Nat Rev Genet 2015
376
7

An integrated map of structural variation in 2,504 human genomes.
Peter H Sudmant, Tobias Rausch, Eugene J Gardner, Robert E Handsaker, Alexej Abyzov, John Huddleston, Yan Zhang, Kai Ye, Goo Jun, Markus Hsi-Yang Fritz,[...]. Nature 2015
966
7

High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays.
D Pinkel, R Segraves, D Sudar, S Clark, I Poole, D Kowbel, C Collins, W L Kuo, C Chen, Y Zhai,[...]. Nat Genet 1998
6

Fine-scale structural variation of the human genome.
Eray Tuzun, Andrew J Sharp, Jeffrey A Bailey, Rajinder Kaul, V Anne Morrison, Lisa M Pertz, Eric Haugen, Hillary Hayden, Donna Albertson, Daniel Pinkel,[...]. Nat Genet 2005
714
6

High-resolution mapping of copy-number alterations with massively parallel sequencing.
Derek Y Chiang, Gad Getz, David B Jaffe, Michael J T O'Kelly, Xiaojun Zhao, Scott L Carter, Carsten Russ, Chad Nusbaum, Matthew Meyerson, Eric S Lander. Nat Methods 2009
351
6

Discovery of common Asian copy number variants using integrated high-resolution array CGH and massively parallel DNA sequencing.
Hansoo Park, Jong-Il Kim, Young Seok Ju, Omer Gokcumen, Ryan E Mills, Sheehyun Kim, Seungbok Lee, Dongwhan Suh, Dongwan Hong, Hyunseok Peter Kang,[...]. Nat Genet 2010
194
6


Gene copy-number variation and associated polymorphisms of complement component C4 in human systemic lupus erythematosus (SLE): low copy number is a risk factor for and high copy number is a protective factor against SLE susceptibility in European Americans.
Yan Yang, Erwin K Chung, Yee Ling Wu, Stephanie L Savelli, Haikady N Nagaraja, Bi Zhou, Maddie Hebert, Karla N Jones, Yaoling Shu, Kathryn Kitzmiller,[...]. Am J Hum Genet 2007
322
6

cnvHap: an integrative population and haplotype-based multiplatform model of SNPs and CNVs.
Lachlan J M Coin, Julian E Asher, Robin G Walters, Julia S El-Sayed Moustafa, Adam J de Smith, Rob Sladek, David J Balding, Philippe Froguel, Alexandra I F Blakemore. Nat Methods 2010
35
17

Modeling genetic inheritance of copy number variations.
Kai Wang, Zhen Chen, Mahlet G Tadesse, Joseph Glessner, Struan F A Grant, Hakon Hakonarson, Maja Bucan, Mingyao Li. Nucleic Acids Res 2008
57
10

High-resolution mapping and analysis of copy number variations in the human genome: a data resource for clinical and research applications.
Tamim H Shaikh, Xiaowu Gai, Juan C Perin, Joseph T Glessner, Hongbo Xie, Kevin Murphy, Ryan O'Hara, Tracy Casalunovo, Laura K Conlin, Monica D'Arcy,[...]. Genome Res 2009
282
6

Whole genome distribution and ethnic differentiation of copy number variation in Caucasian and Asian populations.
Jian Li, Tielin Yang, Liang Wang, Han Yan, Yinping Zhang, Yan Guo, Feng Pan, Zhixin Zhang, Yumei Peng, Qi Zhou,[...]. PLoS One 2009
45
13

A robust statistical method for case-control association testing with copy number variation.
Chris Barnes, Vincent Plagnol, Tomas Fitzgerald, Richard Redon, Jonathan Marchini, David Clayton, Matthew E Hurles. Nat Genet 2008
129
6

R-Gada: a fast and flexible pipeline for copy number analysis in association studies.
Roger Pique-Regi, Alejandro Cáceres, Juan R González. BMC Bioinformatics 2010
42
14

KEGG for representation and analysis of molecular networks involving diseases and drugs.
Minoru Kanehisa, Susumu Goto, Miho Furumichi, Mao Tanabe, Mika Hirakawa. Nucleic Acids Res 2010
6

Genotype, haplotype and copy-number variation in worldwide human populations.
Mattias Jakobsson, Sonja W Scholz, Paul Scheet, J Raphael Gibbs, Jenna M VanLiere, Hon-Chung Fung, Zachary A Szpiech, James H Degnan, Kai Wang, Rita Guerreiro,[...]. Nature 2008
592
6

Common deletion polymorphisms in the human genome.
Steven A McCarroll, Tracy N Hadnott, George H Perry, Pardis C Sabeti, Michael C Zody, Jeffrey C Barrett, Stephanie Dallaire, Stacey B Gabriel, Charles Lee, Mark J Daly,[...]. Nat Genet 2006
526
6

Segmental copy number variation shapes tissue transcriptomes.
Charlotte N Henrichsen, Nicolas Vinckenbosch, Sebastian Zöllner, Evelyne Chaignat, Sylvain Pradervand, Frédéric Schütz, Manuel Ruedi, Henrik Kaessmann, Alexandre Reymond. Nat Genet 2009
225
6

The population genetics of structural variation.
Donald F Conrad, Matthew E Hurles. Nat Genet 2007
131
6

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists.
Da Wei Huang, Brad T Sherman, Richard A Lempicki. Nucleic Acids Res 2009
6

Strong signatures of selection in the domestic pig genome.
Carl-Johan Rubin, Hendrik-Jan Megens, Alvaro Martinez Barrio, Khurram Maqbool, Shumaila Sayyab, Doreen Schwochow, Chao Wang, Örjan Carlborg, Patric Jern, Claus B Jørgensen,[...]. Proc Natl Acad Sci U S A 2012
312
6

An initial map of chromosomal segmental copy number variations in the chicken.
Xiaofei Wang, Samuel Nahashon, Tromondae K Feaster, Ann Bohannon-Stewart, Nathaniel Adefope. BMC Genomics 2010
71
8

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
6


Analysis of copy number variants by three detection algorithms and their association with body size in horses.
Julia Metzger, Ute Philipp, Maria Susana Lopes, Artur da Camara Machado, Michela Felicetti, Maurizio Silvestrelli, Ottmar Distl. BMC Genomics 2013
35
17

Statistical challenges associated with detecting copy number variations with next-generation sequencing.
Shu Mei Teo, Yudi Pawitan, Chee Seng Ku, Kee Seng Chia, Agus Salim. Bioinformatics 2012
121
6

A genome-wide scan for copy number variations using high-density single nucleotide polymorphism array in Simmental cattle.
Yang Wu, Huizhong Fan, Shengyun Jing, Jiangwei Xia, Yan Chen, Lupei Zhang, Xue Gao, Junya Li, Huijiang Gao, Hongyan Ren. Anim Genet 2015
21
28

PICNIC: an algorithm to predict absolute allelic copy number variation with microarray cancer data.
Chris D Greenman, Graham Bignell, Adam Butler, Sarah Edkins, Jon Hinton, Dave Beare, Sajani Swamy, Thomas Santarius, Lina Chen, Sara Widaa,[...]. Biostatistics 2010
135
5


Systematic assessment of copy number variant detection via genome-wide SNP genotyping.
Gregory M Cooper, Troy Zerr, Jeffrey M Kidd, Evan E Eichler, Deborah A Nickerson. Nat Genet 2008
152
5

Accurate whole human genome sequencing using reversible terminator chemistry.
David R Bentley, Shankar Balasubramanian, Harold P Swerdlow, Geoffrey P Smith, John Milton, Clive G Brown, Kevin P Hall, Dirk J Evers, Colin L Barnes, Helen R Bignell,[...]. Nature 2008
5

Systematic inference of copy-number genotypes from personal genome sequencing data reveals extensive olfactory receptor gene content diversity.
Sebastian M Waszak, Yehudit Hasin, Thomas Zichner, Tsviya Olender, Ifat Keydar, Miriam Khen, Adrian M Stütz, Andreas Schlattl, Doron Lancet, Jan O Korbel. PLoS Comput Biol 2010
46
10

Population-genetic properties of differentiated human copy-number polymorphisms.
Catarina D Campbell, Nick Sampas, Anya Tsalenko, Peter H Sudmant, Jeffrey M Kidd, Maika Malig, Tiffany H Vu, Laura Vives, Peter Tsang, Laurakay Bruhn,[...]. Am J Hum Genet 2011
64
7

A chromosome 8 gene-cluster polymorphism with low human beta-defensin 2 gene copy number predisposes to Crohn disease of the colon.
Klaus Fellermann, Daniel E Stange, Elke Schaeffeler, Hartmut Schmalzl, Jan Wehkamp, Charles L Bevins, Walter Reinisch, Alexander Teml, Matthias Schwab, Peter Lichter,[...]. Am J Hum Genet 2006
387
5

Accurate and reliable high-throughput detection of copy number variation in the human genome.
Heike Fiegler, Richard Redon, Dan Andrews, Carol Scott, Robert Andrews, Carol Carder, Richard Clark, Oliver Dovey, Peter Ellis, Lars Feuk,[...]. Genome Res 2006
121
5

Rare structural variants disrupt multiple genes in neurodevelopmental pathways in schizophrenia.
Tom Walsh, Jon M McClellan, Shane E McCarthy, Anjené M Addington, Sarah B Pierce, Greg M Cooper, Alex S Nord, Mary Kusenda, Dheeraj Malhotra, Abhishek Bhandari,[...]. Science 2008
5

A second generation human haplotype map of over 3.1 million SNPs.
Kelly A Frazer, Dennis G Ballinger, David R Cox, David A Hinds, Laura L Stuve, Richard A Gibbs, John W Belmont, Andrew Boudreau, Paul Hardenbol, Suzanne M Leal,[...]. Nature 2007
5

Association of a germ-line copy number variation at 2p24.3 and risk for aggressive prostate cancer.
Wennuan Liu, Jishan Sun, Ge Li, Yi Zhu, Scott Zhang, Seong-Tae Kim, Jielin Sun, Fredrik Wiklund, Kathleen Wiley, Sarah D Isaacs,[...]. Cancer Res 2009
61
8

BreakDancer: an algorithm for high-resolution mapping of genomic structural variation.
Ken Chen, John W Wallis, Michael D McLellan, David E Larson, Joelle M Kalicki, Craig S Pohl, Sean D McGrath, Michael C Wendl, Qunyuan Zhang, Devin P Locke,[...]. Nat Methods 2009
880
5


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.