A citation-based method for searching scientific literature

Lisa S Shock, Prashant V Thakkar, Erica J Peterson, Richard G Moran, Shirley M Taylor. Proc Natl Acad Sci U S A 2011
Times Cited: 321







List of co-cited articles
1113 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Distinct structural features of TFAM drive mitochondrial DNA packaging versus transcriptional activation.
Huu B Ngo, Geoffrey A Lovely, Rob Phillips, David C Chan. Nat Commun 2014
114
5

Regulating role of fetal thyroid hormones on placental mitochondrial DNA methylation: epidemiological evidence from the ENVIRONAGE birth cohort study.
Bram G Janssen, Hyang-Min Byun, Harry A Roels, Wilfried Gyselaers, Joris Penders, Andrea A Baccarelli, Tim S Nawrot. Clin Epigenetics 2017
9
55

Methylated bases in DNA from Paramecium aurelia.
D J Cummings, A Tait, J M Goddard. Biochim Biophys Acta 1974
98
5

Effect of valproic acid on mitochondrial epigenetics.
Hu Chen, Svetlana Dzitoyeva, Hari Manev. Eur J Pharmacol 2012
56
8

A novel role for mitochondria in regulating epigenetic modification in the nucleus.
Dominic J Smiraglia, Mariola Kulawiec, Gaia L Bistulfi, Sampa Ghoshal Gupta, Keshav K Singh. Cancer Biol Ther 2008
136
5

Mitochondrial toxicity of tobacco smoke and air pollution.
Jessica L Fetterman, Melissa J Sammy, Scott W Ballinger. Toxicology 2017
35
14

BAK/BAX macropores facilitate mitochondrial herniation and mtDNA efflux during apoptosis.
Kate McArthur, Lachlan W Whitehead, John M Heddleston, Lucy Li, Benjamin S Padman, Viola Oorschot, Niall D Geoghegan, Stephane Chappaz, Sophia Davidson, Hui San Chin,[...]. Science 2018
247
5

Autophagy proteins regulate innate immune responses by inhibiting the release of mitochondrial DNA mediated by the NALP3 inflammasome.
Kiichi Nakahira, Jeffrey Adam Haspel, Vijay A K Rathinam, Seon-Jin Lee, Tamas Dolinay, Hilaire C Lam, Joshua A Englert, Marlene Rabinovitch, Manuela Cernadas, Hong Pyo Kim,[...]. Nat Immunol 2011
5

Oxidized mitochondrial DNA activates the NLRP3 inflammasome during apoptosis.
Kenichi Shimada, Timothy R Crother, Justin Karlin, Jargalsaikhan Dagvadorj, Norika Chiba, Shuang Chen, V Krishnan Ramanujan, Andrea J Wolf, Laurent Vergnes, David M Ojcius,[...]. Immunity 2012
5

A role for mitochondria in NLRP3 inflammasome activation.
Rongbin Zhou, Amir S Yazdi, Philippe Menu, Jürg Tschopp. Nature 2011
5

Single-nucleotide-resolution sequencing of human N6-methyldeoxyadenosine reveals strand-asymmetric clusters associated with SSBP1 on the mitochondrial genome.
Casslynn W Q Koh, Yeek Teck Goh, Joel D W Toh, Suat Peng Neo, Sarah B Ng, Jayantha Gunaratne, Yong-Gui Gao, Stephen R Quake, William F Burkholder, Wee Siong S Goh. Nucleic Acids Res 2018
22
22



Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine.
Shinsuke Ito, Li Shen, Qing Dai, Susan C Wu, Leonard B Collins, James A Swenberg, Chuan He, Yi Zhang. Science 2011
5

The mitochondrial side of epigenetics.
Alessandra Castegna, Vito Iacobazzi, Vittoria Infantino. Physiol Genomics 2015
49
10

Apoptotic caspases prevent the induction of type I interferons by mitochondrial DNA.
Anthony Rongvaux, Ruaidhrí Jackson, Christian C D Harman, Tuo Li, A Phillip West, Marcel R de Zoete, Youtong Wu, Brian Yordy, Saquib A Lakhani, Chia-Yi Kuan,[...]. Cell 2014
367
5

Origins and functional consequences of somatic mitochondrial DNA mutations in human cancer.
Young Seok Ju, Ludmil B Alexandrov, Moritz Gerstung, Inigo Martincorena, Serena Nik-Zainal, Manasa Ramakrishna, Helen R Davies, Elli Papaemmanuil, Gunes Gundem, Adam Shlien,[...]. Elife 2014
207
5

Mitochondrial genome acquisition restores respiratory function and tumorigenic potential of cancer cells without mitochondrial DNA.
An S Tan, James W Baty, Lan-Feng Dong, Ayenachew Bezawork-Geleta, Berwini Endaya, Jacob Goodwin, Martina Bajzikova, Jaromira Kovarova, Martin Peterka, Bing Yan,[...]. Cell Metab 2015
376
5

Mitochondrial DNA copy number is regulated in a tissue specific manner by DNA methylation of the nuclear-encoded DNA polymerase gamma A.
Richard D W Kelly, Arsalan Mahmud, Matthew McKenzie, Ian A Trounce, Justin C St John. Nucleic Acids Res 2012
110
5


Mitochondrial reactive oxygen species (ROS) and ROS-induced ROS release.
Dmitry B Zorov, Magdalena Juhaszova, Steven J Sollott. Physiol Rev 2014
5

Translating the histone code.
T Jenuwein, C D Allis. Science 2001
5

Mitochondrial DNA methylation and copy number predict body composition in a young female population.
Laura Bordoni, Vanessa Smerilli, Cinzia Nasuti, Rosita Gabbianelli. J Transl Med 2019
10
50

Altered mitochondrial DNA methylation and mitochondrial DNA copy number in an APP/PS1 transgenic mouse model of Alzheimer disease.
YingYing Xu, LinLin Xu, Min Han, XiangTian Liu, Fan Li, XiaoYan Zhou, Yun Wang, JianZhong Bi. Biochem Biophys Res Commun 2019
14
35

Platelet mitochondrial DNA methylation predicts future cardiovascular outcome in adults with overweight and obesity.
Sarah Corsi, Simona Iodice, Luisella Vigna, Akin Cayir, John C Mathers, Valentina Bollati, Hyang-Min Byun. Clin Epigenetics 2020
10
50

N6-Deoxyadenosine Methylation in Mammalian Mitochondrial DNA.
Ziyang Hao, Tong Wu, Xiaolong Cui, Pingping Zhu, Caiping Tan, Xiaoyang Dou, Kai-Wen Hsu, Yueh-Te Lin, Pei-Hua Peng, Li-Sheng Zhang,[...]. Mol Cell 2020
43
11

Alzheimer's disease: early alterations in brain DNA methylation at ANK1, BIN1, RHBDF2 and other loci.
Philip L De Jager, Gyan Srivastava, Katie Lunnon, Jeremy Burgess, Leonard C Schalkwyk, Lei Yu, Matthew L Eaton, Brendan T Keenan, Jason Ernst, Cristin McCabe,[...]. Nat Neurosci 2014
468
4

Selective chemical labeling reveals the genome-wide distribution of 5-hydroxymethylcytosine.
Chun-Xiao Song, Keith E Szulwach, Ye Fu, Qing Dai, Chengqi Yi, Xuekun Li, Yujing Li, Chih-Hsin Chen, Wen Zhang, Xing Jian,[...]. Nat Biotechnol 2011
683
4

Genome-wide DNA methylation differences between late-onset Alzheimer's disease and cognitively normal controls in human frontal cortex.
Kelly M Bakulski, Dana C Dolinoy, Maureen A Sartor, Henry L Paulson, John R Konen, Andrew P Lieberman, Roger L Albin, Howard Hu, Laura S Rozek. J Alzheimers Dis 2012
158
4


DNA methylation landscapes: provocative insights from epigenomics.
Miho M Suzuki, Adrian Bird. Nat Rev Genet 2008
4

Phosphorylation of human TFAM in mitochondria impairs DNA binding and promotes degradation by the AAA+ Lon protease.
Bin Lu, Jae Lee, Xiaobo Nie, Min Li, Yaroslav I Morozov, Sundararajan Venkatesh, Daniel F Bogenhagen, Dmitry Temiakov, Carolyn K Suzuki. Mol Cell 2013
172
4

The mitochondrial transcription factor TFAM coordinates the assembly of multiple DNA molecules into nucleoid-like structures.
Brett A Kaufman, Nela Durisic, Jeffrey M Mativetsky, Santiago Costantino, Mark A Hancock, Peter Grutter, Eric A Shoubridge. Mol Biol Cell 2007
258
4


Down-regulation of the antisense mitochondrial non-coding RNAs (ncRNAs) is a unique vulnerability of cancer cells and a potential target for cancer therapy.
Soledad Vidaurre, Christopher Fitzpatrick, Verónica A Burzio, Macarena Briones, Claudio Villota, Jaime Villegas, Javiera Echenique, Luciana Oliveira-Cruz, Mariela Araya, Vincenzo Borgna,[...]. J Biol Chem 2014
44
9

Interplay of mitochondrial metabolism and microRNAs.
Julian Geiger, Louise T Dalgaard. Cell Mol Life Sci 2017
48
8

Expression of a family of noncoding mitochondrial RNAs distinguishes normal from cancer cells.
Verónica A Burzio, Claudio Villota, Jaime Villegas, Eduardo Landerer, Enrique Boccardo, Luisa L Villa, Ronny Martínez, Constanza Lopez, Fancy Gaete, Viviana Toro,[...]. Proc Natl Acad Sci U S A 2009
73
5

Mitochondrial DNA Hypomethylation Is a Biomarker Associated with Induced Senescence in Human Fetal Heart Mesenchymal Stem Cells.
Dehai Yu, Zhonghua Du, Lingling Pian, Tao Li, Xue Wen, Wei Li, Su-Jeong Kim, Jialin Xiao, Pinchas Cohen, Jiuwei Cui,[...]. Stem Cells Int 2017
23
17


Mitochondrial DNA replication during differentiation of murine embryonic stem cells.
Joao M Facucho-Oliveira, Jon Alderson, Emma C Spikings, Stuart Egginton, Justin C St John. J Cell Sci 2007
212
4

Mitochondrial DNA content and methylation in fetal cord blood of pregnancies with placental insufficiency.
Chiara Novielli, Chiara Mandò, Silvia Tabano, Gaia M Anelli, Laura Fontana, Patrizio Antonazzo, Monica Miozzo, Irene Cetin. Placenta 2017
31
12


Mitochondrial content reflects oocyte variability and fertilization outcome.
Teresa Almeida Santos, Shahy El Shourbagy, Justin C St John. Fertil Steril 2006
239
4

Low oocyte mitochondrial DNA content in ovarian insufficiency.
P May-Panloup, M F Chrétien, C Jacques, C Vasseur, Y Malthièry, P Reynier. Hum Reprod 2005
174
4

CpG and Non-CpG Methylation in Epigenetic Gene Regulation and Brain Function.
Hyun Sik Jang, Woo Jung Shin, Jeong Eon Lee, Jeong Tae Do. Genes (Basel) 2017
129
4

DNA methyltransferases, DNA damage repair, and cancer.
Bilian Jin, Keith D Robertson. Adv Exp Med Biol 2013
240
4

On the origin of mitosing cells
L Sagan. J Theor Biol 1967
607
4

Mitochondrial DNA mutations in human cancer.
A Chatterjee, E Mambo, D Sidransky. Oncogene 2006
403
4

Consistent decrease in global DNA methylation and hydroxymethylation in the hippocampus of Alzheimer's disease patients.
Leonidas Chouliaras, Diego Mastroeni, Elaine Delvaux, Andrew Grover, Gunter Kenis, Patrick R Hof, Harry W M Steinbusch, Paul D Coleman, Bart P F Rutten, Daniel L A van den Hove. Neurobiol Aging 2013
232
4

Epigenetic effects of low perinatal doses of flame retardant BDE-47 on mitochondrial and nuclear genes in rat offspring.
Hyang-Min Byun, Nora Benachour, Daniel Zalko, Maria Chiara Frisardi, Elena Colicino, Larissa Takser, Andrea A Baccarelli. Toxicology 2015
29
13


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.