A citation-based method for searching scientific literature

Brian P Hafler, Natalia Surzenko, Kevin T Beier, Claudio Punzo, Jeffrey M Trimarchi, Jennifer H Kong, Constance L Cepko. Proc Natl Acad Sci U S A 2012
Times Cited: 77







List of co-cited articles
857 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Roles of homeobox and bHLH genes in specification of a retinal cell type.
J Hatakeyama, K Tomita, T Inoue, R Kageyama. Development 2001
186
9

Transformation of cone precursors to functional rod photoreceptors by bZIP transcription factor NRL.
Edwin C T Oh, Naheed Khan, Elena Novelli, Hemant Khanna, Enrica Strettoi, Anand Swaroop. Proc Natl Acad Sci U S A 2007
109
9




Temporal patterning of Drosophila medulla neuroblasts controls neural fates.
Xin Li, Ted Erclik, Claire Bertet, Zhenqing Chen, Roumen Voutev, Srinidhi Venkatesh, Javier Morante, Arzu Celik, Claude Desplan. Nature 2013
152
9


ASCL1 reprograms mouse Muller glia into neurogenic retinal progenitors.
Julia Pollak, Matthew S Wilken, Yumi Ueki, Kristen E Cox, Jane M Sullivan, Russell J Taylor, Edward M Levine, Thomas A Reh. Development 2013
119
9

Mash1 promotes neuronal differentiation in the retina.
K Tomita, S Nakanishi, F Guillemot, R Kageyama. Genes Cells 1996
121
9


Crx, a novel Otx-like paired-homeodomain protein, binds to and transactivates photoreceptor cell-specific genes.
S Chen, Q L Wang, Z Nie, H Sun, G Lennon, N G Copeland, D J Gilbert, N A Jenkins, D J Zack. Neuron 1997
536
9


Retinal repair by transplantation of photoreceptor precursors.
R E MacLaren, R A Pearson, A MacNeil, R H Douglas, T E Salt, M Akimoto, A Swaroop, J C Sowden, R R Ali. Nature 2006
723
9

Self-formation of optic cups and storable stratified neural retina from human ESCs.
Tokushige Nakano, Satoshi Ando, Nozomu Takata, Masako Kawada, Keiko Muguruma, Kiyotoshi Sekiguchi, Koichi Saito, Shigenobu Yonemura, Mototsugu Eiraku, Yoshiki Sasai. Cell Stem Cell 2012
721
9

Overlapping expression patterns and redundant roles for AP-2 transcription factors in the developing mammalian retina.
Erin A Bassett, Anna Korol, Paula A Deschamps, Reinhard Buettner, Valerie A Wallace, Trevor Williams, Judith A West-Mays. Dev Dyn 2012
38
18

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.
Evan Z Macosko, Anindita Basu, Rahul Satija, James Nemesh, Karthik Shekhar, Melissa Goldman, Itay Tirosh, Allison R Bialas, Nolan Kamitaki, Emily M Martersteck,[...]. Cell 2015
9

Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics.
Karthik Shekhar, Sylvain W Lapan, Irene E Whitney, Nicholas M Tran, Evan Z Macosko, Monika Kowalczyk, Xian Adiconis, Joshua Z Levin, James Nemesh, Melissa Goldman,[...]. Cell 2016
448
9

Single-Cell RNA-Seq Analysis of Retinal Development Identifies NFI Factors as Regulating Mitotic Exit and Late-Born Cell Specification.
Brian S Clark, Genevieve L Stein-O'Brien, Fion Shiau, Gabrielle H Cannon, Emily Davis-Marcisak, Thomas Sherman, Clayton P Santiago, Thanh V Hoang, Fatemeh Rajaii, Rebecca E James-Esposito,[...]. Neuron 2019
95
9

OTX2 represses sister cell fate choices in the developing retina to promote photoreceptor specification.
Miruna Georgiana Ghinia Tegla, Diego F Buenaventura, Diana Y Kim, Cassandra Thakurdin, Kevin C Gonzalez, Mark M Emerson. Elife 2020
9
77


The timing of cortical neurogenesis is encoded within lineages of individual progenitor cells.
Qin Shen, Yue Wang, John T Dimos, Christopher A Fasano, Timothy N Phoenix, Ihor R Lemischka, Natalia B Ivanova, Stefano Stifani, Edward E Morrisey, Sally Temple. Nat Neurosci 2006
419
7


A robust and high-throughput Cre reporting and characterization system for the whole mouse brain.
Linda Madisen, Theresa A Zwingman, Susan M Sunkin, Seung Wook Oh, Hatim A Zariwala, Hong Gu, Lydia L Ng, Richard D Palmiter, Michael J Hawrylycz, Allan R Jones,[...]. Nat Neurosci 2010
7


Ikaros promotes early-born neuronal fates in the cerebral cortex.
Jessica M Alsiö, Basile Tarchini, Michel Cayouette, Frederick J Livesey. Proc Natl Acad Sci U S A 2013
53
11

The transcriptome of retinal Müller glial cells.
Karin Roesch, Ashutosh P Jadhav, Jeffrey M Trimarchi, Michael B Stadler, Botond Roska, Ben B Sun, Constance L Cepko. J Comp Neurol 2008
243
7




Numb is required for the production of terminal asymmetric cell divisions in the developing mouse retina.
Amel Kechad, Christine Jolicoeur, Adele Tufford, Pierre Mattar, Renee W Y Chow, William A Harris, Michel Cayouette. J Neurosci 2012
34
17

Late-stage neuronal progenitors in the retina are radial Müller glia that function as retinal stem cells.
Rebecca L Bernardos, Linda K Barthel, Jason R Meyers, Pamela A Raymond. J Neurosci 2007
389
7

Forkhead box N4 (Foxn4) activates Dll4-Notch signaling to suppress photoreceptor cell fates of early retinal progenitors.
Huijun Luo, Kangxin Jin, Zhenhui Xie, Feng Qiu, Shengguo Li, Min Zou, Li Cai, Katsuto Hozumi, David T Shima, Mengqing Xiang. Proc Natl Acad Sci U S A 2012
47
12

SOX2 is a dose-dependent regulator of retinal neural progenitor competence.
Olena V Taranova, Scott T Magness, B Matthew Fagan, Yongqin Wu, Natalie Surzenko, Scott R Hutton, Larysa H Pevny. Genes Dev 2006
378
7


Gene regulation logic in retinal ganglion cell development: Isl1 defines a critical branch distinct from but overlapping with Pou4f2.
Xiuqian Mu, Xueyao Fu, Phillip D Beremand, Terry L Thomas, William H Klein. Proc Natl Acad Sci U S A 2008
103
7

Influences on neural lineage and mode of division in the zebrafish retina in vivo.
Lucia Poggi, Marta Vitorino, Ichiro Masai, William A Harris. J Cell Biol 2005
128
7

A gene network downstream of transcription factor Math5 regulates retinal progenitor cell competence and ganglion cell fate.
Xiuqian Mu, Xueyao Fu, Hongxia Sun, Phillip D Beremand, Terry L Thomas, William H Klein. Dev Biol 2005
101
7

Retinal cell fate determination and bHLH factors.
Jun Hatakeyama, Ryoichiro Kageyama. Semin Cell Dev Biol 2004
191
7


From progenitors to differentiated cells in the vertebrate retina.
Michalis Agathocleous, William A Harris. Annu Rev Cell Dev Biol 2009
167
7

Self-organizing optic-cup morphogenesis in three-dimensional culture.
Mototsugu Eiraku, Nozomu Takata, Hiroki Ishibashi, Masako Kawada, Eriko Sakakura, Satoru Okuda, Kiyotoshi Sekiguchi, Taiji Adachi, Yoshiki Sasai. Nature 2011
7

Intrinsic control of mammalian retinogenesis.
Mengqing Xiang. Cell Mol Life Sci 2013
55
10

Transcription factors SOX4 and SOX11 function redundantly to regulate the development of mouse retinal ganglion cells.
Ying Jiang, Qian Ding, Xiaoling Xie, Richard T Libby, Veronique Lefebvre, Lin Gan. J Biol Chem 2013
70
8

Photoreceptor cell fate specification in vertebrates.
Joseph A Brzezinski, Thomas A Reh. Development 2015
73
8

Two transcription factors, Pou4f2 and Isl1, are sufficient to specify the retinal ganglion cell fate.
Fuguo Wu, Tadeusz J Kaczynski, Santhosh Sethuramanujam, Renzhong Li, Varsha Jain, Malcolm Slaughter, Xiuqian Mu. Proc Natl Acad Sci U S A 2015
53
11


Stimulation of functional neuronal regeneration from Müller glia in adult mice.
Nikolas L Jorstad, Matthew S Wilken, William N Grimes, Stefanie G Wohl, Leah S VandenBosch, Takeshi Yoshimatsu, Rachel O Wong, Fred Rieke, Thomas A Reh. Nature 2017
166
7

Combinatorial regulation of a Blimp1 (Prdm1) enhancer in the mouse retina.
Taylor S Mills, Tatiana Eliseeva, Stephanie M Bersie, Grace Randazzo, Jhenya Nahreini, Ko Uoon Park, Joseph A Brzezinski. PLoS One 2017
12
50

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
7

Identification and characterization of early photoreceptor cis-regulatory elements and their relation to Onecut1.
Nathalie Jean-Charles, Diego F Buenaventura, Mark M Emerson. Neural Dev 2018
8
75


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.