A citation-based method for searching scientific literature

Gunes Gundem, Peter Van Loo, Barbara Kremeyer, Ludmil B Alexandrov, Jose M C Tubio, Elli Papaemmanuil, Daniel S Brewer, Heini M L Kallio, Gunilla Högnäs, Matti Annala, Kati Kivinummi, Victoria Goody, Calli Latimer, Sarah O'Meara, Kevin J Dawson, William Isaacs, Michael R Emmert-Buck, Matti Nykter, Christopher Foster, Zsofia Kote-Jarai, Douglas Easton, Hayley C Whitaker, David E Neal, Colin S Cooper, Rosalind A Eeles, Tapio Visakorpi, Peter J Campbell, Ultan McDermott, David C Wedge, G Steven Bova. Nature 2015
Times Cited: 820







List of co-cited articles
989 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples.
Kristian Cibulskis, Michael S Lawrence, Scott L Carter, Andrey Sivachenko, David Jaffe, Carrie Sougnez, Stacey Gabriel, Matthew Meyerson, Eric S Lander, Gad Getz. Nat Biotechnol 2013
5

Intratumor heterogeneity in localized lung adenocarcinomas delineated by multiregion sequencing.
Jianjun Zhang, Junya Fujimoto, Jianhua Zhang, David C Wedge, Xingzhi Song, Jiexin Zhang, Sahil Seth, Chi-Wan Chow, Yu Cao, Curtis Gumbs,[...]. Science 2014
634
5

Defining the Hallmarks of Metastasis.
Danny R Welch, Douglas R Hurst. Cancer Res 2019
183
5

Pancreatic Cancer Metastases Harbor Evidence of Polyclonality.
Ravikanth Maddipati, Ben Z Stanger. Cancer Discov 2015
164
5

EMT Transition States during Tumor Progression and Metastasis.
Ievgenia Pastushenko, Cédric Blanpain. Trends Cell Biol 2019
820
5

Guidelines and definitions for research on epithelial-mesenchymal transition.
Jing Yang, Parker Antin, Geert Berx, Cédric Blanpain, Thomas Brabletz, Marianne Bronner, Kyra Campbell, Amparo Cano, Jordi Casanova, Gerhard Christofori,[...]. Nat Rev Mol Cell Biol 2020
488
5

Neutrophils escort circulating tumour cells to enable cell cycle progression.
Barbara Maria Szczerba, Francesc Castro-Giner, Marcus Vetter, Ilona Krol, Sofia Gkountela, Julia Landin, Manuel C Scheidmann, Cinzia Donato, Ramona Scherrer, Jochen Singer,[...]. Nature 2019
446
5

Tumor evolution: Linear, branching, neutral or punctuated?
Alexander Davis, Ruli Gao, Nicholas Navin. Biochim Biophys Acta Rev Cancer 2017
133
5

Cancer Genome Evolutionary Trajectories in Metastasis.
Nicolai J Birkbak, Nicholas McGranahan. Cancer Cell 2020
63
7

The repertoire of mutational signatures in human cancer.
Ludmil B Alexandrov, Jaegil Kim, Nicholas J Haradhvala, Mi Ni Huang, Alvin Wei Tian Ng, Yang Wu, Arnoud Boot, Kyle R Covington, Dmitry A Gordenin, Erik N Bergstrom,[...]. Nature 2020
864
5

Concordance of Circulating Tumor DNA and Matched Metastatic Tissue Biopsy in Prostate Cancer.
Alexander W Wyatt, Matti Annala, Rahul Aggarwal, Kevin Beja, Felix Feng, Jack Youngren, Adam Foye, Paul Lloyd, Matti Nykter, Tomasz M Beer,[...]. J Natl Cancer Inst 2017
190
5

The causes and consequences of genetic heterogeneity in cancer evolution.
Rebecca A Burrell, Nicholas McGranahan, Jiri Bartek, Charles Swanton. Nature 2013
5

Emerging mechanisms of resistance to androgen receptor inhibitors in prostate cancer.
Philip A Watson, Vivek K Arora, Charles L Sawyers. Nat Rev Cancer 2015
685
5

Subclonal cooperation drives metastasis by modulating local and systemic immune microenvironments.
Michalina Janiszewska, Doris P Tabassum, Zafira Castaño, Simona Cristea, Kimiyo N Yamamoto, Natalie L Kingston, Katherine C Murphy, Shaokun Shu, Nicholas W Harper, Carlos Gil Del Alcazar,[...]. Nat Cell Biol 2019
67
7

A multigenic program mediating breast cancer metastasis to bone.
Yibin Kang, Peter M Siegel, Weiping Shu, Maria Drobnjak, Sanna M Kakonen, Carlos Cordón-Cardo, Theresa A Guise, Joan Massagué. Cancer Cell 2003
5

Genomic Hallmarks and Structural Variation in Metastatic Prostate Cancer.
David A Quigley, Ha X Dang, Shuang G Zhao, Paul Lloyd, Rahul Aggarwal, Joshi J Alumkal, Adam Foye, Vishal Kothari, Marc D Perry, Adina M Bailey,[...]. Cell 2018
257
5

Cancer Statistics, 2021.
Rebecca L Siegel, Kimberly D Miller, Hannah E Fuchs, Ahmedin Jemal. CA Cancer J Clin 2021
5

Sequencing of prostate cancers identifies new cancer genes, routes of progression and drug targets.
David C Wedge, Gunes Gundem, Thomas Mitchell, Dan J Woodcock, Inigo Martincorena, Mohammed Ghori, Jorge Zamora, Adam Butler, Hayley Whitaker, Zsofia Kote-Jarai,[...]. Nat Genet 2018
120
5

Pan-cancer patterns of somatic copy number alteration.
Travis I Zack, Stephen E Schumacher, Scott L Carter, Andre D Cherniack, Gordon Saksena, Barbara Tabak, Michael S Lawrence, Cheng-Zhong Zhsng, Jeremiah Wala, Craig H Mermel,[...]. Nat Genet 2013
5

Phylogenetic ctDNA analysis depicts early-stage lung cancer evolution.
Christopher Abbosh, Nicolai J Birkbak, Gareth A Wilson, Mariam Jamal-Hanjani, Tudor Constantin, Raheleh Salari, John Le Quesne, David A Moore, Selvaraju Veeriah, Rachel Rosenthal,[...]. Nature 2017
797
5

Detection of circulating tumor DNA in early- and late-stage human malignancies.
Chetan Bettegowda, Mark Sausen, Rebecca J Leary, Isaac Kinde, Yuxuan Wang, Nishant Agrawal, Bjarne R Bartlett, Hao Wang, Brandon Luber, Rhoda M Alani,[...]. Sci Transl Med 2014
4

Multiregion Whole-Exome Sequencing Uncovers the Genetic Evolution and Mutational Heterogeneity of Early-Stage Metastatic Melanoma.
Katja Harbst, Martin Lauss, Helena Cirenajwis, Karolin Isaksson, Frida Rosengren, Therese Törngren, Anders Kvist, Maria C Johansson, Johan Vallon-Christersson, Bo Baldetorp,[...]. Cancer Res 2016
66
6

Addition of docetaxel, zoledronic acid, or both to first-line long-term hormone therapy in prostate cancer (STAMPEDE): survival results from an adaptive, multiarm, multistage, platform randomised controlled trial.
Nicholas D James, Matthew R Sydes, Noel W Clarke, Malcolm D Mason, David P Dearnaley, Melissa R Spears, Alastair W S Ritchie, Christopher C Parker, J Martin Russell, Gerhardt Attard,[...]. Lancet 2016
4

Stereotactic ablative radiotherapy versus standard of care palliative treatment in patients with oligometastatic cancers (SABR-COMET): a randomised, phase 2, open-label trial.
David A Palma, Robert Olson, Stephen Harrow, Stewart Gaede, Alexander V Louie, Cornelis Haasbeek, Liam Mulroy, Michael Lock, George B Rodrigues, Brian P Yaremko,[...]. Lancet 2019
799
4

VEGF-C promotes immune tolerance in B16 melanomas and cross-presentation of tumor antigen by lymph node lymphatics.
Amanda W Lund, Fernanda V Duraes, Sachiko Hirosue, Vidya R Raghavan, Chiara Nembrini, Susan N Thomas, Amine Issa, Stéphanie Hugues, Melody A Swartz. Cell Rep 2012
214
4

Phylogenetic analyses of melanoma reveal complex patterns of metastatic dissemination.
J Zachary Sanborn, Jongsuk Chung, Elizabeth Purdom, Nicholas J Wang, Hojabr Kakavand, James S Wilmott, Timothy Butler, John F Thompson, Graham J Mann, Lauren E Haydu,[...]. Proc Natl Acad Sci U S A 2015
102
4

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
4

Single-cell mapping reveals new markers and functions of lymphatic endothelial cells in lymph nodes.
Noriki Fujimoto, Yuliang He, Marco D'Addio, Carlotta Tacconi, Michael Detmar, Lothar C Dieterich. PLoS Biol 2020
44
9

Metastatic Latency and Immune Evasion through Autocrine Inhibition of WNT.
Srinivas Malladi, Danilo G Macalinao, Xin Jin, Lan He, Harihar Basnet, Yilong Zou, Elisa de Stanchina, Joan Massagué. Cell 2016
376
4

Multistep nature of metastatic inefficiency: dormancy of solitary cells after successful extravasation and limited survival of early micrometastases.
K J Luzzi, I C MacDonald, E E Schmidt, N Kerkvliet, V L Morris, A F Chambers, A C Groom. Am J Pathol 1998
813
4

Limited heterogeneity of known driver gene mutations among the metastases of individual patients with pancreatic cancer.
Alvin P Makohon-Moore, Ming Zhang, Johannes G Reiter, Ivana Bozic, Benjamin Allen, Deepanjan Kundu, Krishnendu Chatterjee, Fay Wong, Yuchen Jiao, Zachary A Kohutek,[...]. Nat Genet 2017
214
4

Convergent loss of PTEN leads to clinical resistance to a PI(3)Kα inhibitor.
Dejan Juric, Pau Castel, Malachi Griffith, Obi L Griffith, Helen H Won, Haley Ellis, Saya H Ebbesen, Benjamin J Ainscough, Avinash Ramu, Gopa Iyer,[...]. Nature 2015
349
4

E-cadherin is required for metastasis in multiple models of breast cancer.
Veena Padmanaban, Ilona Krol, Yasir Suhail, Barbara M Szczerba, Nicola Aceto, Joel S Bader, Andrew J Ewald. Nature 2019
284
4

Immune cell promotion of metastasis.
Takanori Kitamura, Bin-Zhi Qian, Jeffrey W Pollard. Nat Rev Immunol 2015
655
4

Identification of the tumour transition states occurring during EMT.
Ievgenia Pastushenko, Audrey Brisebarre, Alejandro Sifrim, Marco Fioramonti, Tatiana Revenco, Soufiane Boumahdi, Alexandra Van Keymeulen, Daniel Brown, Virginie Moers, Sophie Lemaire,[...]. Nature 2018
625
4

Lymph node metastases develop through a wider evolutionary bottleneck than distant metastases.
Johannes G Reiter, Wei-Ting Hung, I-Hsiu Lee, Shriya Nagpal, Peter Giunta, Sebastian Degner, Gang Liu, Emma C E Wassenaar, William R Jeck, Martin S Taylor,[...]. Nat Genet 2020
38
10

Spatiotemporal regulation of epithelial-mesenchymal transition is essential for squamous cell carcinoma metastasis.
Jeff H Tsai, Joana Liu Donaher, Danielle A Murphy, Sandra Chau, Jing Yang. Cancer Cell 2012
726
4

Evolution of Metastases in Space and Time under Immune Selection.
Mihaela Angelova, Bernhard Mlecnik, Angela Vasaturo, Gabriela Bindea, Tessa Fredriksen, Lucie Lafontaine, Bénédicte Buttard, Erwan Morgand, Daniela Bruni, Anne Jouret-Mourin,[...]. Cell 2018
204
4

Quantitative evidence for early metastatic seeding in colorectal cancer.
Zheng Hu, Jie Ding, Zhicheng Ma, Ruping Sun, Jose A Seoane, J Scott Shaffer, Carlos J Suarez, Anna S Berghoff, Chiara Cremolini, Alfredo Falcone,[...]. Nat Genet 2019
174
4

Cancer genome landscapes.
Bert Vogelstein, Nickolas Papadopoulos, Victor E Velculescu, Shibin Zhou, Luis A Diaz, Kenneth W Kinzler. Science 2013
4

Copy number alteration burden predicts prostate cancer relapse.
Haley Hieronymus, Nikolaus Schultz, Anuradha Gopalan, Brett S Carver, Matthew T Chang, Yonghong Xiao, Adriana Heguy, Kety Huberman, Melanie Bernstein, Melissa Assel,[...]. Proc Natl Acad Sci U S A 2014
219
4

Trimmomatic: a flexible trimmer for Illumina sequence data.
Anthony M Bolger, Marc Lohse, Bjoern Usadel. Bioinformatics 2014
4

Early dissemination seeds metastasis in breast cancer.
Hedayatollah Hosseini, Milan M S Obradović, Martin Hoffmann, Kathryn L Harper, Maria Soledad Sosa, Melanie Werner-Klein, Lahiri Kanth Nanduri, Christian Werno, Carolin Ehrl, Matthias Maneck,[...]. Nature 2016
357
4

limma powers differential expression analyses for RNA-sequencing and microarray studies.
Matthew E Ritchie, Belinda Phipson, Di Wu, Yifang Hu, Charity W Law, Wei Shi, Gordon K Smyth. Nucleic Acids Res 2015
4

Integrative clinical genomics of metastatic cancer.
Dan R Robinson, Yi-Mi Wu, Robert J Lonigro, Pankaj Vats, Erin Cobain, Jessica Everett, Xuhong Cao, Erica Rabban, Chandan Kumar-Sinha, Victoria Raymond,[...]. Nature 2017
428
4

Defining oligometastatic disease from a radiation oncology perspective: An ESTRO-ASTRO consensus document.
Yolande Lievens, Matthias Guckenberger, Daniel Gomez, Morten Hoyer, Puneeth Iyengar, Isabelle Kindts, Alejandra Méndez Romero, Daan Nevens, David Palma, Catherine Park,[...]. Radiother Oncol 2020
122
4

18F-fluciclovine PET-CT and 68Ga-PSMA-11 PET-CT in patients with early biochemical recurrence after prostatectomy: a prospective, single-centre, single-arm, comparative imaging trial.
Jeremie Calais, Francesco Ceci, Matthias Eiber, Thomas A Hope, Michael S Hofman, Christoph Rischpler, Tore Bach-Gansmo, Cristina Nanni, Bital Savir-Baruch, David Elashoff,[...]. Lancet Oncol 2019
213
4

Reprogramming normal human epithelial tissues to a common, lethal neuroendocrine cancer lineage.
Jung Wook Park, John K Lee, Katherine M Sheu, Liang Wang, Nikolas G Balanis, Kim Nguyen, Bryan A Smith, Chen Cheng, Brandon L Tsai, Donghui Cheng,[...]. Science 2018
140
4

Enzalutamide in Men with Nonmetastatic, Castration-Resistant Prostate Cancer.
Maha Hussain, Karim Fizazi, Fred Saad, Per Rathenborg, Neal Shore, Ubirajara Ferreira, Petro Ivashchenko, Eren Demirhan, Katharina Modelska, De Phung,[...]. N Engl J Med 2018
507
4

The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data.
Ethan Cerami, Jianjiong Gao, Ugur Dogrusoz, Benjamin E Gross, Selcuk Onur Sumer, Bülent Arman Aksoy, Anders Jacobsen, Caitlin J Byrne, Michael L Heuer, Erik Larsson,[...]. Cancer Discov 2012
4


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.