A citation-based method for searching scientific literature

Roberto Feuda, Ferdinand Marlétaz, Michael A Bentley, Peter W H Holland. Genome Biol Evol 2016
Times Cited: 40







List of co-cited articles
400 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Photic niche invasions: phylogenetic history of the dim-light foraging augochlorine bees (Halictidae).
Simon M Tierney, Oris Sanjur, Grethel G Grajales, Leandro M Santos, Eldredge Bermingham, William T Wcislo. Proc Biol Sci 2012
11
27


Clustal W and Clustal X version 2.0.
M A Larkin, G Blackshields, N P Brown, R Chenna, P A McGettigan, H McWilliam, F Valentin, I M Wallace, A Wilm, R Lopez,[...]. Bioinformatics 2007
7

Receptor noise as a determinant of colour thresholds.
M Vorobyev, D Osorio. Proc Biol Sci 1998
551
7

Physiological basis of phototaxis to near-infrared light in Nephotettix cincticeps.
Motohiro Wakakuwa, Finlay Stewart, Yukiko Matsumoto, Shigeru Matsunaga, Kentaro Arikawa. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 2014
17
17

Multiple spectral inputs improve motion discrimination in the Drosophila visual system.
Trevor J Wardill, Olivier List, Xiaofeng Li, Sidhartha Dongre, Marie McCulloch, Chun-Yuan Ting, Cahir J O'Kane, Shiming Tang, Chi-Hon Lee, Roger C Hardie,[...]. Science 2012
76
7

On visual pigment templates and the spectral shape of invertebrate rhodopsins and metarhodopsins.
Doekele G Stavenga. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 2010
37
8

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.
Mark D Robinson, Davis J McCarthy, Gordon K Smyth. Bioinformatics 2010
7

Genomes of the rice pest brown planthopper and its endosymbionts reveal complex complementary contributions for host adaptation.
Jian Xue, Xin Zhou, Chuan-Xi Zhang, Li-Li Yu, Hai-Wei Fan, Zhuo Wang, Hai-Jun Xu, Yu Xi, Zeng-Rong Zhu, Wen-Wu Zhou,[...]. Genome Biol 2014
262
7

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research.
Ana Conesa, Stefan Götz, Juan Miguel García-Gómez, Javier Terol, Manuel Talón, Montserrat Robles. Bioinformatics 2005
7

Rhodopsin coexpression in UV photoreceptors of Aedes aegypti and Anopheles gambiae mosquitoes.
Xiaobang Hu, Matthew T Leming, Michelle A Whaley, Joseph E O'Tousa. J Exp Biol 2014
28
10


Coexpression of three middle wavelength-absorbing visual pigments in sexually dimorphic photoreceptors of the butterfly Colias erate.
Yuri Ogawa, Hiroko Awata, Motohiro Wakakuwa, Michiyo Kinoshita, Doekele G Stavenga, Kentaro Arikawa. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 2012
24
12

Scotopic colour vision in nocturnal hawkmoths.
Almut Kelber, Anna Balkenius, Eric J Warrant. Nature 2002
120
7

Spectral sensitivity of the ctenid spider Cupiennius salei.
Lydia M Zopf, Axel Schmid, David Fredman, Bo Joakim Eriksson. J Exp Biol 2013
9
33

Spectral filtering enables trichromatic vision in colorful jumping spiders.
Daniel B Zurek, Thomas W Cronin, Lisa A Taylor, Kevin Byrne, Mara L G Sullivan, Nathan I Morehouse. Curr Biol 2015
36
8




Visual processing in the central bee brain.
Angelique C Paulk, Andrew M Dacks, James Phillips-Portillo, Jean-Marc Fellous, Wulfila Gronenberg. J Neurosci 2009
64
7

Direct neural pathways convey distinct visual information to Drosophila mushroom bodies.
Katrin Vogt, Yoshinori Aso, Toshihide Hige, Stephan Knapek, Toshiharu Ichinose, Anja B Friedrich, Glenn C Turner, Gerald M Rubin, Hiromu Tanimoto. Elife 2016
74
7

Opsins have evolved under the permanent heterozygote model: insights from phylotranscriptomics of Odonata.
Anton Suvorov, Nicholas O Jensen, Camilla R Sharkey, M Stanley Fujimoto, Paul Bodily, Haley M Cahill Wightman, T Heath Ogden, Mark J Clement, Seth M Bybee. Mol Ecol 2017
17
17

The spectral input systems of hymenopteran insects and their receptor-based colour vision.
D Peitsch, A Fietz, H Hertel, J de Souza, D F Ventura, R Menzel. J Comp Physiol A 1992
315
7

Colour in the eyes of insects.
D G Stavenga. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 2002
73
7


The genome of the model beetle and pest Tribolium castaneum.
Stephen Richards, Richard A Gibbs, George M Weinstock, Susan J Brown, Robin Denell, Richard W Beeman, Richard Gibbs, Richard W Beeman, Susan J Brown, Gregor Bucher,[...]. Nature 2008
912
7

Accelerated Profile HMM Searches.
Sean R Eddy. PLoS Comput Biol 2011
7

Evolutionary History of the Hymenoptera.
Ralph S Peters, Lars Krogmann, Christoph Mayer, Alexander Donath, Simon Gunkel, Karen Meusemann, Alexey Kozlov, Lars Podsiadlowski, Malte Petersen, Robert Lanfear,[...]. Curr Biol 2017
256
7

Colour vision in marine organisms.
Justin Marshall, Karen L Carleton, Thomas Cronin. Curr Opin Neurobiol 2015
50
7

GenomeScope: fast reference-free genome profiling from short reads.
Gregory W Vurture, Fritz J Sedlazeck, Maria Nattestad, Charles J Underwood, Han Fang, James Gurtowski, Michael C Schatz. Bioinformatics 2017
526
7

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.
Ben Langmead, Cole Trapnell, Mihai Pop, Steven L Salzberg. Genome Biol 2009
7



Gene finding in novel genomes.
Ian Korf. BMC Bioinformatics 2004
7

HyPhy: hypothesis testing using phylogenies.
Sergei L Kosakovsky Pond, Simon D W Frost, Spencer V Muse. Bioinformatics 2005
7

Drosophila melanogaster rhodopsin Rh7 is a UV-to-visible light sensor with an extraordinarily broad absorption spectrum.
Kazumi Sakai, Kei Tsutsui, Takahiro Yamashita, Naoyuki Iwabe, Keisuke Takahashi, Akimori Wada, Yoshinori Shichida. Sci Rep 2017
11
27

Nocturnal colour vision--not as rare as we might think.
Almut Kelber, Lina S V Roth. J Exp Biol 2006
62
7

Crepuscular and nocturnal illumination and its effects on color perception by the nocturnal hawkmoth Deilephila elpenor.
Sönke Johnsen, Almut Kelber, Eric Warrant, Alison M Sweeney, Edith A Widder, Raymond L Lee, Javier Hernández-Andrés. J Exp Biol 2006
102
7

Retention of duplicated long-wavelength opsins in mosquito lineages by positive selection and differential expression.
Gloria I Giraldo-Calderón, Michael J Zanis, Catherine A Hill. BMC Evol Biol 2017
11
27

The lycaenid butterfly Polyommatus icarus uses a duplicated blue opsin to see green.
Marilou P Sison-Mangus, Adriana D Briscoe, Guillermo Zaccardi, Helge Knüttel, Almut Kelber. J Exp Biol 2008
28
10

Sexual Dimorphism and Retinal Mosaic Diversification following the Evolution of a Violet Receptor in Butterflies.
Kyle J McCulloch, Furong Yuan, Ying Zhen, Matthew L Aardema, Gilbert Smith, Jorge Llorente-Bousquets, Peter Andolfatto, Adriana D Briscoe. Mol Biol Evol 2017
19
15


Color Processing in the Early Visual System of Drosophila.
Christopher Schnaitmann, Väinö Haikala, Eva Abraham, Vitus Oberhauser, Thomas Thestrup, Oliver Griesbeck, Dierk F Reiff. Cell 2018
66
7

Unconventional Roles of Opsins.
Nicole Y Leung, Craig Montell. Annu Rev Cell Dev Biol 2017
57
7

The genome of the water strider Gerris buenoi reveals expansions of gene repertoires associated with adaptations to life on the water.
David Armisén, Rajendhran Rajakumar, Markus Friedrich, Joshua B Benoit, Hugh M Robertson, Kristen A Panfilio, Seung-Joon Ahn, Monica F Poelchau, Hsu Chao, Huyen Dinh,[...]. BMC Genomics 2018
25
12

Basic local alignment search tool.
S F Altschul, W Gish, W Miller, E W Myers, D J Lipman. J Mol Biol 1990
7

Color discrimination in the red range with only one long-wavelength sensitive opsin.
Guillermo Zaccardi, Almut Kelber, Marilou P Sison-Mangus, Adriana D Briscoe. J Exp Biol 2006
62
7

Evolution and mechanism of spectral tuning of blue-absorbing visual pigments in butterflies.
Motohiro Wakakuwa, Akihisa Terakita, Mitsumasa Koyanagi, Doekele G Stavenga, Yoshinori Shichida, Kentaro Arikawa. PLoS One 2010
23
13


Exceptional diversity of opsin expression patterns in Neogonodactylus oerstedii (Stomatopoda) retinas.
Megan L Porter, Hiroko Awata, Michael J Bok, Thomas W Cronin. Proc Natl Acad Sci U S A 2020
12
25


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.