A citation-based method for searching scientific literature

Yan Xu, Takako Mizuno, Anusha Sridharan, Yina Du, Minzhe Guo, Jie Tang, Kathryn A Wikenheiser-Brokamp, Anne-Karina T Perl, Vincent A Funari, Jason J Gokey, Barry R Stripp, Jeffrey A Whitsett. JCI Insight 2016
Times Cited: 240







List of co-cited articles
1130 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Mitochondrial catalase overexpressed transgenic mice are protected against lung fibrosis in part via preventing alveolar epithelial cell mitochondrial DNA damage.
Seok-Jo Kim, Paul Cheresh, Renea P Jablonski, Luisa Morales-Nebreda, Yuan Cheng, Erin Hogan, Anjana Yeldandi, Monica Chi, Raul Piseaux, Karen Ridge,[...]. Free Radic Biol Med 2016
40
15

Epithelial cell mitochondrial dysfunction and PINK1 are induced by transforming growth factor-beta1 in pulmonary fibrosis.
Avignat S Patel, Jin Woo Song, Sarah G Chu, Kenji Mizumura, Juan C Osorio, Ying Shi, Souheil El-Chemaly, Chun Geun Lee, Ivan O Rosas, Jack A Elias,[...]. PLoS One 2015
104
6

Monocyte-derived alveolar macrophages drive lung fibrosis and persist in the lung over the life span.
Alexander V Misharin, Luisa Morales-Nebreda, Paul A Reyfman, Carla M Cuda, James M Walter, Alexandra C McQuattie-Pimentel, Ching-I Chen, Kishore R Anekalla, Nikita Joshi, Kinola J N Williams,[...]. J Exp Med 2017
341
6

Mitofusins regulate lipid metabolism to mediate the development of lung fibrosis.
Kuei-Pin Chung, Chia-Lang Hsu, Li-Chao Fan, Ziling Huang, Divya Bhatia, Yi-Jung Chen, Shu Hisata, Soo Jung Cho, Kiichi Nakahira, Mitsuru Imamura,[...]. Nat Commun 2019
28
21

Fibrotic extracellular matrix activates a profibrotic positive feedback loop.
Matthew W Parker, Daniel Rossi, Mark Peterson, Karen Smith, Kristina Sikström, Eric S White, John E Connett, Craig A Henke, Ola Larsson, Peter B Bitterman. J Clin Invest 2014
287
6

The role of Scgb1a1+ Clara cells in the long-term maintenance and repair of lung airway, but not alveolar, epithelium.
Emma L Rawlins, Tadashi Okubo, Yan Xue, David M Brass, Richard L Auten, Hiroshi Hasegawa, Fan Wang, Brigid L M Hogan. Cell Stem Cell 2009
494
6

Identification of bronchioalveolar stem cells in normal lung and lung cancer.
Carla F Bender Kim, Erica L Jackson, Amber E Woolfenden, Sharon Lawrence, Imran Babar, Sinae Vogel, Denise Crowley, Roderick T Bronson, Tyler Jacks. Cell 2005
6

Heterogeneity of Fibroblasts and Myofibroblasts in Pulmonary Fibrosis.
David M Habiel, Cory M Hogaboam. Curr Pathobiol Rep 2017
40
15

Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics.
Kelly Street, Davide Risso, Russell B Fletcher, Diya Das, John Ngai, Nir Yosef, Elizabeth Purdom, Sandrine Dudoit. BMC Genomics 2018
326
6

SINCERA: A Pipeline for Single-Cell RNA-Seq Profiling Analysis.
Minzhe Guo, Hui Wang, S Steven Potter, Jeffrey A Whitsett, Yan Xu. PLoS Comput Biol 2015
144
6

Mechanosignaling through YAP and TAZ drives fibroblast activation and fibrosis.
Fei Liu, David Lagares, Kyoung Moo Choi, Lauren Stopfer, Aleksandar Marinković, Vladimir Vrbanac, Clemens K Probst, Samantha E Hiemer, Thomas H Sisson, Jeffrey C Horowitz,[...]. Am J Physiol Lung Cell Mol Physiol 2015
330
6

Lung regeneration by multipotent stem cells residing at the bronchioalveolar-duct junction.
Qiaozhen Liu, Kuo Liu, Guizhong Cui, Xiuzhen Huang, Shun Yao, Wenke Guo, Zhen Qin, Yan Li, Rui Yang, Wenjuan Pu,[...]. Nat Genet 2019
82
7

Emergence of a Wave of Wnt Signaling that Regulates Lung Alveologenesis by Controlling Epithelial Self-Renewal and Differentiation.
David B Frank, Tien Peng, Jarod A Zepp, Melinda Snitow, Tiffaney L Vincent, Ian J Penkala, Zheng Cui, Michael J Herriges, Michael P Morley, Su Zhou,[...]. Cell Rep 2016
95
6

Recruited Monocytes and Type 2 Immunity Promote Lung Regeneration following Pneumonectomy.
Andrew J Lechner, Ian H Driver, Jinwoo Lee, Carmen M Conroy, Abigail Nagle, Richard M Locksley, Jason R Rock. Cell Stem Cell 2017
88
6

Distinct Airway Epithelial Stem Cells Hide among Club Cells but Mobilize to Promote Alveolar Regeneration.
Jaymin J Kathiriya, Alexis N Brumwell, Julia R Jackson, Xiaodan Tang, Harold A Chapman. Cell Stem Cell 2020
34
17

Basal cells as stem cells of the mouse trachea and human airway epithelium.
Jason R Rock, Mark W Onaitis, Emma L Rawlins, Yun Lu, Cheryl P Clark, Yan Xue, Scott H Randell, Brigid L M Hogan. Proc Natl Acad Sci U S A 2009
824
6

Genetic mutations in surfactant protein C are a rare cause of sporadic cases of IPF.
W E Lawson, S W Grant, V Ambrosini, K E Womble, E P Dawson, K B Lane, C Markin, E Renzoni, P Lympany, A Q Thomas,[...]. Thorax 2004
170
6

Genome-Wide Association Study of Susceptibility to Idiopathic Pulmonary Fibrosis.
Richard J Allen, Beatriz Guillen-Guio, Justin M Oldham, Shwu-Fan Ma, Amy Dressen, Megan L Paynton, Luke M Kraven, Ma'en Obeidat, Xuan Li, Michael Ng,[...]. Am J Respir Crit Care Med 2020
50
12

XBP1S Regulates MUC5B in a Promoter Variant-Dependent Pathway in Idiopathic Pulmonary Fibrosis Airway Epithelia.
Gang Chen, Carla M P Ribeiro, Ling Sun, Kenichi Okuda, Takafumi Kato, Rodney C Gilmore, Mary B Martino, Hong Dang, Aiman Abzhanova, Jennifer M Lin,[...]. Am J Respir Crit Care Med 2019
23
26

Alveolar regeneration through a Krt8+ transitional stem cell state that persists in human lung fibrosis.
Maximilian Strunz, Lukas M Simon, Meshal Ansari, Jaymin J Kathiriya, Ilias Angelidis, Christoph H Mayr, George Tsidiridis, Marius Lange, Laura F Mattner, Min Yee,[...]. Nat Commun 2020
44
13

Plasticity of Hopx(+) type I alveolar cells to regenerate type II cells in the lung.
Rajan Jain, Christina E Barkauskas, Norifumi Takeda, Emily J Bowie, Haig Aghajanian, Qiaohong Wang, Arun Padmanabhan, Lauren J Manderfield, Mudit Gupta, Deqiang Li,[...]. Nat Commun 2015
138
5

Temporal, spatial, and phenotypical changes of PDGFRα expressing fibroblasts during late lung development.
Mehari Endale, Shawn Ahlfeld, Erik Bao, Xiaoting Chen, Jenna Green, Zach Bess, Matthew T Weirauch, Yan Xu, Anne Karina Perl. Dev Biol 2017
39
12

Human embryonic lung epithelial tips are multipotent progenitors that can be expanded in vitro as long-term self-renewing organoids.
Marko Z Nikolić, Oriol Caritg, Quitz Jeng, Jo-Anne Johnson, Dawei Sun, Kate J Howell, Jane L Brady, Usua Laresgoiti, George Allen, Richard Butler,[...]. Elife 2017
92
5

Pdgfra marks a cellular lineage with distinct contributions to myofibroblasts in lung maturation and injury response.
Rongbo Li, Ksenija Bernau, Nathan Sandbo, Jing Gu, Sebastian Preissl, Xin Sun. Elife 2018
42
11

Cigarette smoking: a risk factor for idiopathic pulmonary fibrosis.
K B Baumgartner, J M Samet, C A Stidley, T V Colby, J A Waldron. Am J Respir Crit Care Med 1997
432
5

Up-regulation and profibrotic role of osteopontin in human idiopathic pulmonary fibrosis.
Annie Pardo, Kevin Gibson, José Cisneros, Thomas J Richards, Yinke Yang, Carina Becerril, Samueal Yousem, Iliana Herrera, Victor Ruiz, Moisés Selman,[...]. PLoS Med 2005
314
5

Age-driven developmental drift in the pathogenesis of idiopathic pulmonary fibrosis.
Moisés Selman, Carlos López-Otín, Annie Pardo. Eur Respir J 2016
63
7

Muc5b overexpression causes mucociliary dysfunction and enhances lung fibrosis in mice.
Laura A Hancock, Corinne E Hennessy, George M Solomon, Evgenia Dobrinskikh, Alani Estrella, Naoko Hara, David B Hill, William J Kissner, Matthew R Markovetz, Diane E Grove Villalon,[...]. Nat Commun 2018
65
7

Cellular senescence: from physiology to pathology.
Daniel Muñoz-Espín, Manuel Serrano. Nat Rev Mol Cell Biol 2014
5

FGF10-FGFR2B Signaling Generates Basal Cells and Drives Alveolar Epithelial Regeneration by Bronchial Epithelial Stem Cells after Lung Injury.
Tingting Yuan, Thomas Volckaert, Elizabeth F Redente, Seantel Hopkins, Kylie Klinkhammer, Roxana Wasnick, Cho-Ming Chao, Jie Yuan, Jin-San Zhang, Changfu Yao,[...]. Stem Cell Reports 2019
29
17

Idiopathic pulmonary fibrosis in US Medicare beneficiaries aged 65 years and older: incidence, prevalence, and survival, 2001-11.
Ganesh Raghu, Shih-Yin Chen, Wei-Shi Yeh, Brad Maroni, Qian Li, Yuan-Chi Lee, Harold R Collard. Lancet Respir Med 2014
306
5

Extensive phenotyping of individuals at risk for familial interstitial pneumonia reveals clues to the pathogenesis of interstitial lung disease.
Jonathan A Kropski, Jason M Pritchett, Donald F Zoz, Peter F Crossno, Cheryl Markin, Errine T Garnett, Amber L Degryse, Daphne B Mitchell, Vasiliy V Polosukhin, Otis B Rickman,[...]. Am J Respir Crit Care Med 2015
90
5


Role of lung pericytes and resident fibroblasts in the pathogenesis of pulmonary fibrosis.
Chi Hung, Geoffrey Linn, Yu-Hua Chow, Akio Kobayashi, Kristen Mittelsteadt, William A Altemeier, Sina A Gharib, Lynn M Schnapp, Jeremy S Duffield. Am J Respir Crit Care Med 2013
197
5

A mutation in the surfactant protein C gene associated with familial interstitial lung disease.
L M Nogee, A E Dunbar, S E Wert, F Askin, A Hamvas, J A Whitsett. N Engl J Med 2001
569
5

Yap/Taz regulate alveolar regeneration and resolution of lung inflammation.
Ryan LaCanna, Daniela Liccardo, Peggy Zhang, Lauren Tragesser, Yan Wang, Tongtong Cao, Harold A Chapman, Edward E Morrisey, Hao Shen, Walter J Koch,[...]. J Clin Invest 2019
56
8

TGFβ signalling in context.
Joan Massagué. Nat Rev Mol Cell Biol 2012
5

IPF lung fibroblasts have a senescent phenotype.
Diana Álvarez, Nayra Cárdenes, Jacobo Sellarés, Marta Bueno, Catherine Corey, Vidya Sagar Hanumanthu, Yating Peng, Hannah D'Cunha, John Sembrat, Mehdi Nouraie,[...]. Am J Physiol Lung Cell Mol Physiol 2017
114
5

NADPH oxidase-4 mediates myofibroblast activation and fibrogenic responses to lung injury.
Louise Hecker, Ragini Vittal, Tamara Jones, Rajesh Jagirdar, Tracy R Luckhardt, Jeffrey C Horowitz, Subramaniam Pennathur, Fernando J Martinez, Victor J Thannickal. Nat Med 2009
562
5

Mitochondrial reactive oxygen species regulate transforming growth factor-β signaling.
Manu Jain, Stephanie Rivera, Elena A Monclus, Lauren Synenki, Aaron Zirk, James Eisenbart, Carol Feghali-Bostwick, Gokhan M Mutlu, G R Scott Budinger, Navdeep S Chandel. J Biol Chem 2013
202
5

Glycolytic Reprogramming in Myofibroblast Differentiation and Lung Fibrosis.
Na Xie, Zheng Tan, Sami Banerjee, Huachun Cui, Jing Ge, Rui-Ming Liu, Karen Bernard, Victor J Thannickal, Gang Liu. Am J Respir Crit Care Med 2015
172
5

Repetitive intratracheal bleomycin models several features of idiopathic pulmonary fibrosis.
Amber L Degryse, Harikrishna Tanjore, Xiaochuan C Xu, Vasiliy V Polosukhin, Brittany R Jones, Frank B McMahon, Linda A Gleaves, Timothy S Blackwell, William E Lawson. Am J Physiol Lung Cell Mol Physiol 2010
164
5

Niche-mediated BMP/SMAD signaling regulates lung alveolar stem cell proliferation and differentiation.
Mei-I Chung, Melissa Bujnis, Christina E Barkauskas, Yoshihiko Kobayashi, Brigid L M Hogan. Development 2018
74
6

Perivascular Gli1+ progenitors are key contributors to injury-induced organ fibrosis.
Rafael Kramann, Rebekka K Schneider, Derek P DiRocco, Flavia Machado, Susanne Fleig, Philip A Bondzie, Joel M Henderson, Benjamin L Ebert, Benjamin D Humphreys. Cell Stem Cell 2015
480
5

Lung Pericytes and Resident Fibroblasts: Busy Multitaskers.
Luke Barron, Sina A Gharib, Jeremy S Duffield. Am J Pathol 2016
54
9


Dimensionality reduction for visualizing single-cell data using UMAP.
Etienne Becht, Leland McInnes, John Healy, Charles-Antoine Dutertre, Immanuel W H Kwok, Lai Guan Ng, Florent Ginhoux, Evan W Newell. Nat Biotechnol 2018
775
5

Integrating single-cell transcriptomic data across different conditions, technologies, and species.
Andrew Butler, Paul Hoffman, Peter Smibert, Efthymia Papalexi, Rahul Satija. Nat Biotechnol 2018
5

Local lung hypoxia determines epithelial fate decisions during alveolar regeneration.
Ying Xi, Thomas Kim, Alexis N Brumwell, Ian H Driver, Ying Wei, Victor Tan, Julia R Jackson, Jianming Xu, Dong-Kee Lee, Jeffrey E Gotts,[...]. Nat Cell Biol 2017
97
5

Aberrant Wnt/beta-catenin pathway activation in idiopathic pulmonary fibrosis.
Marco Chilosi, Venerino Poletti, Alberto Zamò, Maurizio Lestani, Licia Montagna, Paola Piccoli, Serena Pedron, Manuela Bertaso, Aldo Scarpa, Bruno Murer,[...]. Am J Pathol 2003
491
5


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.