A citation-based method for searching scientific literature

Alyssa J Miller, Briana R Dye, Daysha Ferrer-Torres, David R Hill, Arend W Overeem, Lonnie D Shea, Jason R Spence. Nat Protoc 2019
Times Cited: 133







List of co-cited articles
1401 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Massive and Reproducible Production of Liver Buds Entirely from Human Pluripotent Stem Cells.
Takanori Takebe, Keisuke Sekine, Masaki Kimura, Emi Yoshizawa, Satoru Ayano, Masaru Koido, Shizuka Funayama, Noriko Nakanishi, Tomoko Hisai, Tatsuya Kobayashi,[...]. Cell Rep 2017
163
7

A Comprehensive Human Gastric Cancer Organoid Biobank Captures Tumor Subtype Heterogeneity and Enables Therapeutic Screening.
Helen H N Yan, Hoi Cheong Siu, Simon Law, Siu Lun Ho, Sarah S K Yue, Wai Yin Tsui, Dessy Chan, April S Chan, Stephanie Ma, Ka On Lam,[...]. Cell Stem Cell 2018
256
7

BMP signaling and cellular dynamics during regeneration of airway epithelium from basal progenitors.
Tomomi Tadokoro, Xia Gao, Charles C Hong, Danielle Hotten, Brigid L M Hogan. Development 2016
81
8

Tumor Evolution and Drug Response in Patient-Derived Organoid Models of Bladder Cancer.
Suk Hyung Lee, Wenhuo Hu, Justin T Matulay, Mark V Silva, Tomasz B Owczarek, Kwanghee Kim, Chee Wai Chua, LaMont J Barlow, Cyriac Kandoth, Alanna B Williams,[...]. Cell 2018
316
7

Development of a Three-Dimensional Bioengineering Technology to Generate Lung Tissue for Personalized Disease Modeling.
Dan C Wilkinson, Jackelyn A Alva-Ornelas, Jennifer M S Sucre, Preethi Vijayaraj, Abdo Durra, Wade Richardson, Steven J Jonas, Manash K Paul, Saravanan Karumbayaram, Bruce Dunn,[...]. Stem Cells Transl Med 2017
63
11

Fusion of Regionally Specified hPSC-Derived Organoids Models Human Brain Development and Interneuron Migration.
Yangfei Xiang, Yoshiaki Tanaka, Benjamin Patterson, Young-Jin Kang, Gubbi Govindaiah, Naomi Roselaar, Bilal Cakir, Kun-Yong Kim, Adam P Lombroso, Sung-Min Hwang,[...]. Cell Stem Cell 2017
286
7

Esophageal Organoids from Human Pluripotent Stem Cells Delineate Sox2 Functions during Esophageal Specification.
Stephen L Trisno, Katherine E D Philo, Kyle W McCracken, Emily M Catá, Sonya Ruiz-Torres, Scott A Rankin, Lu Han, Talia Nasr, Praneet Chaturvedi, Marc E Rothenberg,[...]. Cell Stem Cell 2018
71
9

Functional screening in human cardiac organoids reveals a metabolic mechanism for cardiomyocyte cell cycle arrest.
Richard J Mills, Drew M Titmarsh, Xaver Koenig, Benjamin L Parker, James G Ryall, Gregory A Quaife-Ryan, Holly K Voges, Mark P Hodson, Charles Ferguson, Lauren Drowley,[...]. Proc Natl Acad Sci U S A 2017
230
7

Organoid cultures recapitulate esophageal adenocarcinoma heterogeneity providing a model for clonality studies and precision therapeutics.
Xiaodun Li, Hayley E Francies, Maria Secrier, Juliane Perner, Ahmad Miremadi, Núria Galeano-Dalmau, William J Barendt, Laura Letchford, Genevieve M Leyden, Emma K Goffin,[...]. Nat Commun 2018
121
7

Generation of kidney organoids from human pluripotent stem cells.
Minoru Takasato, Pei X Er, Han S Chiu, Melissa H Little. Nat Protoc 2016
153
7

Efficient differentiation of human embryonic stem cells to definitive endoderm.
Kevin A D'Amour, Alan D Agulnick, Susan Eliazer, Olivia G Kelly, Evert Kroon, Emmanuel E Baetge. Nat Biotechnol 2005
7

A functional CFTR assay using primary cystic fibrosis intestinal organoids.
Johanna F Dekkers, Caroline L Wiegerinck, Hugo R de Jonge, Inez Bronsveld, Hettie M Janssens, Karin M de Winter-de Groot, Arianne M Brandsma, Nienke W M de Jong, Marcel J C Bijvelds, Bob J Scholte,[...]. Nat Med 2013
574
7

Single-cell Wnt signaling niches maintain stemness of alveolar type 2 cells.
Ahmad N Nabhan, Douglas G Brownfield, Pehr B Harbury, Mark A Krasnow, Tushar J Desai. Science 2018
306
7

SARS-CoV-2 Reverse Genetics Reveals a Variable Infection Gradient in the Respiratory Tract.
Yixuan J Hou, Kenichi Okuda, Caitlin E Edwards, David R Martinez, Takanori Asakura, Kenneth H Dinnon, Takafumi Kato, Rhianna E Lee, Boyd L Yount, Teresa M Mascenik,[...]. Cell 2020
737
7

Human lung development: recent progress and new challenges.
Marko Z Nikolić, Dawei Sun, Emma L Rawlins. Development 2018
60
11

Organoid Cultures as Preclinical Models of Non-Small Cell Lung Cancer.
Ruoshi Shi, Nikolina Radulovich, Christine Ng, Ni Liu, Hirotsugu Notsuda, Michael Cabanero, Sebastiao N Martins-Filho, Vibha Raghavan, Quan Li, Arvind Singh Mer,[...]. Clin Cancer Res 2020
64
10

A one-stop microfluidic-based lung cancer organoid culture platform for testing drug sensitivity.
Da Jung Jung, Tae Hoon Shin, Minsuh Kim, Chang Ohk Sung, Se Jin Jang, Gi Seok Jeong. Lab Chip 2019
45
15

Organoids as an in vitro model of human development and disease.
Aliya Fatehullah, Si Hui Tan, Nick Barker. Nat Cell Biol 2016
699
7

Sustained in vitro intestinal epithelial culture within a Wnt-dependent stem cell niche.
Akifumi Ootani, Xingnan Li, Eugenio Sangiorgi, Quoc T Ho, Hiroo Ueno, Shuji Toda, Hajime Sugihara, Kazuma Fujimoto, Irving L Weissman, Mario R Capecchi,[...]. Nat Med 2009
556
7

Designer matrices for intestinal stem cell and organoid culture.
Nikolce Gjorevski, Norman Sachs, Andrea Manfrin, Sonja Giger, Maiia E Bragina, Paloma Ordóñez-Morán, Hans Clevers, Matthias P Lutolf. Nature 2016
638
7

Zika virus impairs growth in human neurospheres and brain organoids.
Patricia P Garcez, Erick Correia Loiola, Rodrigo Madeiro da Costa, Luiza M Higa, Pablo Trindade, Rodrigo Delvecchio, Juliana Minardi Nascimento, Rodrigo Brindeiro, Amilcar Tanuri, Stevens K Rehen. Science 2016
732
7

A human disease model of drug toxicity-induced pulmonary edema in a lung-on-a-chip microdevice.
Dongeun Huh, Daniel C Leslie, Benjamin D Matthews, Jacob P Fraser, Samuel Jurek, Geraldine A Hamilton, Kevin S Thorneloe, Michael Allen McAlexander, Donald E Ingber. Sci Transl Med 2012
497
7

Generation of multiciliated cells in functional airway epithelia from human induced pluripotent stem cells.
Amy L Firth, Carl T Dargitz, Susan J Qualls, Tushar Menon, Rebecca Wright, Oded Singer, Fred H Gage, Ajai Khanna, Inder M Verma. Proc Natl Acad Sci U S A 2014
142
7

Recapitulation of SARS-CoV-2 infection and cholangiocyte damage with human liver ductal organoids.
Bing Zhao, Chao Ni, Ran Gao, Yuyan Wang, Li Yang, Jinsong Wei, Ting Lv, Jianqing Liang, Qisheng Zhang, Wei Xu,[...]. Protein Cell 2020
192
7

Small airway-on-a-chip enables analysis of human lung inflammation and drug responses in vitro.
Kambez H Benam, Remi Villenave, Carolina Lucchesi, Antonio Varone, Cedric Hubeau, Hyun-Hee Lee, Stephen E Alves, Michael Salmon, Thomas C Ferrante, James C Weaver,[...]. Nat Methods 2016
338
7

Organoid Modeling of the Tumor Immune Microenvironment.
James T Neal, Xingnan Li, Junjie Zhu, Valeria Giangarra, Caitlin L Grzeskowiak, Jihang Ju, Iris H Liu, Shin-Heng Chiou, Ameen A Salahudeen, Amber R Smith,[...]. Cell 2018
485
7

Modelling Cryptosporidium infection in human small intestinal and lung organoids.
Inha Heo, Devanjali Dutta, Deborah A Schaefer, Nino Iakobachvili, Benedetta Artegiani, Norman Sachs, Kim E Boonekamp, Gregory Bowden, Antoni P A Hendrickx, Robert J L Willems,[...]. Nat Microbiol 2018
178
7

Notch-dependent differentiation of adult airway basal stem cells.
Jason R Rock, Xia Gao, Yan Xue, Scott H Randell, Young-Yun Kong, Brigid L M Hogan. Cell Stem Cell 2011
287
6

Functional repair of CFTR by CRISPR/Cas9 in intestinal stem cell organoids of cystic fibrosis patients.
Gerald Schwank, Bon-Kyoung Koo, Valentina Sasselli, Johanna F Dekkers, Inha Heo, Turan Demircan, Nobuo Sasaki, Sander Boymans, Edwin Cuppen, Cornelis K van der Ent,[...]. Cell Stem Cell 2013
807
6

Lineage-negative progenitors mobilize to regenerate lung epithelium after major injury.
Andrew E Vaughan, Alexis N Brumwell, Ying Xi, Jeffrey E Gotts, Doug G Brownfield, Barbara Treutlein, Kevin Tan, Victor Tan, Feng Chun Liu, Mark R Looney,[...]. Nature 2015
370
6

Nephron organoids derived from human pluripotent stem cells model kidney development and injury.
Ryuji Morizane, Albert Q Lam, Benjamin S Freedman, Seiji Kishi, M Todd Valerius, Joseph V Bonventre. Nat Biotechnol 2015
439
6

Organoids by design.
Takanori Takebe, James M Wells. Science 2019
137
6

Transcriptome-wide Analysis Reveals Hallmarks of Human Intestine Development and Maturation In Vitro and In Vivo.
Stacy R Finkbeiner, David R Hill, Christopher H Altheim, Priya H Dedhia, Matthew J Taylor, Yu-Hwai Tsai, Alana M Chin, Maxime M Mahe, Carey L Watson, Jennifer J Freeman,[...]. Stem Cell Reports 2015
140
6

Generation of three-dimensional retinal tissue with functional photoreceptors from human iPSCs.
Xiufeng Zhong, Christian Gutierrez, Tian Xue, Christopher Hampton, M Natalia Vergara, Li-Hui Cao, Ann Peters, Tea Soon Park, Elias T Zambidis, Jason S Meyer,[...]. Nat Commun 2014
493
6


A Platform for Generation of Chamber-Specific Cardiac Tissues and Disease Modeling.
Yimu Zhao, Naimeh Rafatian, Nicole T Feric, Brian J Cox, Roozbeh Aschar-Sobbi, Erika Yan Wang, Praful Aggarwal, Boyang Zhang, Genevieve Conant, Kacey Ronaldson-Bouchard,[...]. Cell 2019
218
6

Assembling human brain organoids.
Sergiu P Paşca. Science 2019
80
7

Development of a human cardiac organoid injury model reveals innate regenerative potential.
Holly K Voges, Richard J Mills, David A Elliott, Robert G Parton, Enzo R Porrello, James E Hudson. Development 2017
91
6

Generation of Human PSC-Derived Kidney Organoids with Patterned Nephron Segments and a De Novo Vascular Network.
Jian Hui Low, Pin Li, Elaine Guo Yan Chew, Bingrui Zhou, Keiichiro Suzuki, Tian Zhang, Michelle Mulan Lian, Meng Liu, Emi Aizawa, Concepcion Rodriguez Esteban,[...]. Cell Stem Cell 2019
116
6

Wnt/β-catenin promotes gastric fundus specification in mice and humans.
Kyle W McCracken, Eitaro Aihara, Baptiste Martin, Calyn M Crawford, Taylor Broda, Julie Treguier, Xinghao Zhang, John M Shannon, Marshall H Montrose, James M Wells. Nature 2017
117
6

Clinical features of patients infected with 2019 novel coronavirus in Wuhan, China.
Chaolin Huang, Yeming Wang, Xingwang Li, Lili Ren, Jianping Zhao, Yi Hu, Li Zhang, Guohui Fan, Jiuyang Xu, Xiaoying Gu,[...]. Lancet 2020
6

Generating human intestinal tissue from pluripotent stem cells in vitro.
Kyle W McCracken, Jonathan C Howell, James M Wells, Jason R Spence. Nat Protoc 2011
259
6

Synthetic hydrogels for human intestinal organoid generation and colonic wound repair.
Ricardo Cruz-Acuña, Miguel Quirós, Attila E Farkas, Priya H Dedhia, Sha Huang, Dorothée Siuda, Vicky García-Hernández, Alyssa J Miller, Jason R Spence, Asma Nusrat,[...]. Nat Cell Biol 2017
246
6

In vitro expansion of human gastric epithelial stem cells and their responses to bacterial infection.
Sina Bartfeld, Tülay Bayram, Marc van de Wetering, Meritxell Huch, Harry Begthel, Pekka Kujala, Robert Vries, Peter J Peters, Hans Clevers. Gastroenterology 2015
402
6


Human gastric cancer modelling using organoids.
Therese Seidlitz, Sebastian R Merker, Alexander Rothe, Falk Zakrzewski, Cläre von Neubeck, Konrad Grützmann, Ulrich Sommer, Christine Schweitzer, Sebastian Schölch, Heike Uhlemann,[...]. Gut 2019
127
6

Unlimited in vitro expansion of adult bi-potent pancreas progenitors through the Lgr5/R-spondin axis.
Meritxell Huch, Paola Bonfanti, Sylvia F Boj, Toshiro Sato, Cindy J M Loomans, Marc van de Wetering, Mozhdeh Sojoodi, Vivian S W Li, Jurian Schuijers, Ana Gracanin,[...]. EMBO J 2013
416
6

In Vitro and In Vivo Development of the Human Airway at Single-Cell Resolution.
Alyssa J Miller, Qianhui Yu, Michael Czerwinski, Yu-Hwai Tsai, Renee F Conway, Angeline Wu, Emily M Holloway, Taylor Walker, Ian A Glass, Barbara Treutlein,[...]. Dev Cell 2020
38
15

Modelling kidney disease with CRISPR-mutant kidney organoids derived from human pluripotent epiblast spheroids.
Benjamin S Freedman, Craig R Brooks, Albert Q Lam, Hongxia Fu, Ryuji Morizane, Vishesh Agrawal, Abdelaziz F Saad, Michelle K Li, Michael R Hughes, Ryan Vander Werff,[...]. Nat Commun 2015
374
6

Sequential cancer mutations in cultured human intestinal stem cells.
Jarno Drost, Richard H van Jaarsveld, Bas Ponsioen, Cheryl Zimberlin, Ruben van Boxtel, Arjan Buijs, Norman Sachs, René M Overmeer, G Johan Offerhaus, Harry Begthel,[...]. Nature 2015
578
6


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.