A citation-based method for searching scientific literature

Zhe Wang, Junming Hu, W Evan Johnson, Joshua D Campbell. BMC Bioinformatics 2019
Times Cited: 7







List of co-cited articles
24 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Joint profiling of chromatin accessibility and gene expression in thousands of single cells.
Junyue Cao, Darren A Cusanovich, Vijay Ramani, Delasa Aghamirzaie, Hannah A Pliner, Andrew J Hill, Riza M Daza, Jose L McFaline-Figueroa, Jonathan S Packer, Lena Christiansen,[...]. Science 2018
245
14

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
14

Batch effects in single-cell RNA-sequencing data are corrected by matching mutual nearest neighbors.
Laleh Haghverdi, Aaron T L Lun, Michael D Morgan, John C Marioni. Nat Biotechnol 2018
474
14

Mapping the Mouse Cell Atlas by Microwell-Seq.
Xiaoping Han, Renying Wang, Yincong Zhou, Lijiang Fei, Huiyu Sun, Shujing Lai, Assieh Saadatpour, Ziming Zhou, Haide Chen, Fang Ye,[...]. Cell 2018
128
14

[Osteoarticular tuberculosis].
A J van der Linden. Ned Tijdschr Geneeskd 1984
80
14

The Human Cell Atlas.
Aviv Regev, Sarah A Teichmann, Eric S Lander, Ido Amit, Christophe Benoist, Ewan Birney, Bernd Bodenmiller, Peter Campbell, Piero Carninci, Menna Clatworthy,[...]. Elife 2017
668
14

Splatter: simulation of single-cell RNA sequencing data.
Luke Zappia, Belinda Phipson, Alicia Oshlack. Genome Biol 2017
184
14

Reference-based analysis of lung single-cell sequencing reveals a transitional profibrotic macrophage.
Dvir Aran, Agnieszka P Looney, Leqian Liu, Esther Wu, Valerie Fong, Austin Hsu, Suzanna Chak, Ram P Naikawadi, Paul J Wolters, Adam R Abate,[...]. Nat Immunol 2019
397
14


Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.
M Ashburner, C A Ball, J A Blake, D Botstein, H Butler, J M Cherry, A P Davis, K Dolinski, S S Dwight, J T Eppig,[...]. Nat Genet 2000
14

Association of human polyomavirus JCV with colon cancer: evidence for interaction of viral T-antigen and beta-catenin.
Sahnila Enam, Luis Del Valle, César Lara, Dai-Di Gan, Carlos Ortiz-Hidalgo, Juan P Palazzo, Kamel Khalili. Cancer Res 2002
149
14

Single-cell sequencing-based technologies will revolutionize whole-organism science.
Ehud Shapiro, Tamir Biezuner, Sten Linnarsson. Nat Rev Genet 2013
590
14

Single-cell triple omics sequencing reveals genetic, epigenetic, and transcriptomic heterogeneity in hepatocellular carcinomas.
Yu Hou, Huahu Guo, Chen Cao, Xianlong Li, Boqiang Hu, Ping Zhu, Xinglong Wu, Lu Wen, Fuchou Tang, Yanyi Huang,[...]. Cell Res 2016
254
14

Single-cell exome sequencing and monoclonal evolution of a JAK2-negative myeloproliferative neoplasm.
Yong Hou, Luting Song, Ping Zhu, Bo Zhang, Ye Tao, Xun Xu, Fuqiang Li, Kui Wu, Jie Liang, Di Shao,[...]. Cell 2012
356
14

Adult mouse hematopoietic stem cells: purification and single-cell assays.
Hideo Ema, Yohei Morita, Satoshi Yamazaki, Azusa Matsubara, Jun Seita, Yuko Tadokoro, Hiroyoshi Kondo, Hina Takano, Hiromitsu Nakauchi. Nat Protoc 2006
126
14

Single-cell Sequencing Reveals Variants in ARID1A, GPRC5A and MLL2 Driving Self-renewal of Human Bladder Cancer Stem Cells.
Zhao Yang, Chong Li, Zusen Fan, Hongjie Liu, Xiaolong Zhang, Zhiming Cai, Liqin Xu, Jian Luo, Yi Huang, Luyun He,[...]. Eur Urol 2017
61
14

Single-cell exome sequencing reveals single-nucleotide mutation characteristics of a kidney tumor.
Xun Xu, Yong Hou, Xuyang Yin, Li Bao, Aifa Tang, Luting Song, Fuqiang Li, Shirley Tsang, Kui Wu, Hanjie Wu,[...]. Cell 2012
423
14

Single-cell epigenomics: techniques and emerging applications.
Omer Schwartzman, Amos Tanay. Nat Rev Genet 2015
139
14

Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells.
Alex K Shalek, Rahul Satija, Xian Adiconis, Rona S Gertner, Jellert T Gaublomme, Raktima Raychowdhury, Schraga Schwartz, Nir Yosef, Christine Malboeuf, Diana Lu,[...]. Nature 2013
682
14

SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.
Anton Bankevich, Sergey Nurk, Dmitry Antipov, Alexey A Gurevich, Mikhail Dvorkin, Alexander S Kulikov, Valery M Lesin, Sergey I Nikolenko, Son Pham, Andrey D Prjibelski,[...]. J Comput Biol 2012
14

Discovery of biclonal origin and a novel oncogene SLC12A5 in colon cancer by single-cell sequencing.
Chang Yu, Jun Yu, Xiaotian Yao, William K K Wu, Youyong Lu, Senwei Tang, Xiangchun Li, Li Bao, Xiaoxing Li, Yong Hou,[...]. Cell Res 2014
79
14

Quartz-Seq2: a high-throughput single-cell RNA-sequencing method that effectively uses limited sequence reads.
Yohei Sasagawa, Hiroki Danno, Hitomi Takada, Masashi Ebisawa, Kaori Tanaka, Tetsutaro Hayashi, Akira Kurisaki, Itoshi Nikaido. Genome Biol 2018
36
14

Loss of heterozygosity at microsatellite markers from region p11-21 of chromosome 8 in microdissected breast tumor but not in peritumoral cells.
Emmanuelle Charafe-Jauffret, Jean-François Moulin, Christophe Ginestier, Didier Bechlian, Nathalie Conte, Jeannine Geneix, José Adélaïde, Tetsuro Noguchi, Jacques Hassoun, Jocelyne Jacquemier,[...]. Int J Oncol 2002
19
14

Tracing the derivation of embryonic stem cells from the inner cell mass by single-cell RNA-Seq analysis.
Fuchou Tang, Catalin Barbacioru, Siqin Bao, Caroline Lee, Ellen Nordman, Xiaohui Wang, Kaiqin Lao, M Azim Surani. Cell Stem Cell 2010
360
14

Single-Cell Sequencing for Precise Cancer Research: Progress and Prospects.
Xiaoyan Zhang, Sadie L Marjani, Zhaoyang Hu, Sherman M Weissman, Xinghua Pan, Shixiu Wu. Cancer Res 2016
63
14

Exome sequencing identifies frequent mutation of ARID1A in molecular subtypes of gastric cancer.
Kai Wang, Junsuo Kan, Siu Tsan Yuen, Stephanie T Shi, Kent Man Chu, Simon Law, Tsun Leung Chan, Zhengyan Kan, Annie S Y Chan, Wai Yin Tsui,[...]. Nat Genet 2011
512
14

Single-cell RNAseq reveals cell adhesion molecule profiles in electrophysiologically defined neurons.
Csaba Földy, Spyros Darmanis, Jason Aoto, Robert C Malenka, Stephen R Quake, Thomas C Südhof. Proc Natl Acad Sci U S A 2016
77
14

Single-cell transcriptome conservation in cryopreserved cells and tissues.
Amy Guillaumet-Adkins, Gustavo Rodríguez-Esteban, Elisabetta Mereu, Maria Mendez-Lago, Diego A Jaitin, Alberto Villanueva, August Vidal, Alex Martinez-Marti, Enriqueta Felip, Ana Vivancos,[...]. Genome Biol 2017
80
14

New evidence supporting megakaryocyte-erythrocyte potential of flk2/flt3+ multipotent hematopoietic progenitors.
E Camilla Forsberg, Thomas Serwold, Scott Kogan, Irving L Weissman, Emmanuelle Passegué. Cell 2006
156
14

G&T-seq: parallel sequencing of single-cell genomes and transcriptomes.
Iain C Macaulay, Wilfried Haerty, Parveen Kumar, Yang I Li, Tim Xiaoming Hu, Mabel J Teng, Mubeen Goolam, Nathalie Saurat, Paul Coupland, Lesley M Shirley,[...]. Nat Methods 2015
339
14

Microarrays: new tools to unravel parasite transcriptomes.
G N Gobert, L P Moertel, D P McManus. Parasitology 2005
13
14

Single cell epigenome sequencing technologies.
Lu Wen, Fuchou Tang. Mol Aspects Med 2018
17
14

RNA-Seq: a revolutionary tool for transcriptomics.
Zhong Wang, Mark Gerstein, Michael Snyder. Nat Rev Genet 2009
14

Generation of a functional mammary gland from a single stem cell.
Mark Shackleton, François Vaillant, Kaylene J Simpson, John Stingl, Gordon K Smyth, Marie-Liesse Asselin-Labat, Li Wu, Geoffrey J Lindeman, Jane E Visvader. Nature 2006
14

Single-Cell Virology: On-Chip Investigation of Viral Infection Dynamics.
Feng Guo, Sixing Li, Mehmet Umut Caglar, Zhangming Mao, Wu Liu, Andrew Woodman, Jamie J Arnold, Claus O Wilke, Tony Jun Huang, Craig E Cameron. Cell Rep 2017
31
14

The applications of single-cell genomics.
Michael Lovett. Hum Mol Genet 2013
11
14

Single cell dissection of early kidney development: multilineage priming.
Eric W Brunskill, Joo-Seop Park, Eunah Chung, Feng Chen, Bliss Magella, S Steven Potter. Development 2014
84
14

Direct ChIP-bisulfite sequencing reveals a role of H3K27me3 mediating aberrant hypermethylation of promoter CpG islands in cancer cells.
Fei Gao, Guanyu Ji, Zhaowei Gao, Xu Han, Mingzhi Ye, Zhimei Yuan, Huijuan Luo, Xiaojun Huang, Karthikraj Natarajan, Jun Wang,[...]. Genomics 2014
31
14

Genome-wide single-cell analysis of recombination activity and de novo mutation rates in human sperm.
Jianbin Wang, H Christina Fan, Barry Behr, Stephen R Quake. Cell 2012
304
14

Identification of somatic mutations in single cell DNA-seq using a spatial model of allelic imbalance.
Lovelace J Luquette, Craig L Bohrson, Max A Sherman, Peter J Park. Nat Commun 2019
19
14

Gene Profiling and T Cell Receptor Sequencing from Antigen-Specific CD4 T Cells.
Marie Holt, Anne Costanzo, Louis Gioia, Brian Abe, Andrew I Su, Luc Teyton. Methods Mol Biol 2018
4
25

Single-cell RNA-seq identifies a PD-1hi ILC progenitor and defines its development pathway.
Yong Yu, Jason C H Tsang, Cui Wang, Simon Clare, Juexuan Wang, Xi Chen, Cordelia Brandt, Leanne Kane, Lia S Campos, Liming Lu,[...]. Nature 2016
162
14

Cancer genomics: one cell at a time.
Nicholas E Navin. Genome Biol 2014
158
14

Light-induced injury in mouse embryos revealed by single-cell RNA sequencing.
Bo Lv, Chaojie Liu, Yu Chen, Lingbin Qi, Lu Wang, Yazhong Ji, Zhigang Xue. Biol Res 2019
3
33

Single-Cell Whole-Genome Amplification and Sequencing: Methodology and Applications.
Lei Huang, Fei Ma, Alec Chapman, Sijia Lu, Xiaoliang Sunney Xie. Annu Rev Genomics Hum Genet 2015
167
14

Dissecting the human microbiome with single-cell genomics.
Andrew C Tolonen, Ramnik J Xavier. Genome Med 2017
16
14

Genome-wide detection of single-nucleotide and copy-number variations of a single human cell.
Chenghang Zong, Sijia Lu, Alec R Chapman, X Sunney Xie. Science 2012
591
14


Patterns of circulating tumor cells identified by CEP8, CK and CD45 in pancreatic cancer.
Yujuan Zhang, Fei Wang, Ning Ning, Qian Chen, Zhuo Yang, Ye Guo, Danfei Xu, Donghong Zhang, Ting Zhan, Wei Cui. Int J Cancer 2015
63
14

clonealign: statistical integration of independent single-cell RNA and DNA sequencing data from human cancers.
Kieran R Campbell, Adi Steif, Emma Laks, Hans Zahn, Daniel Lai, Andrew McPherson, Hossein Farahani, Farhia Kabeer, Ciara O'Flanagan, Justina Biele,[...]. Genome Biol 2019
27
14


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.