A citation-based method for searching scientific literature

Cemalettin Bekpen, Diethard Tautz. Brief Funct Genomics 2019
Times Cited: 2







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The Protein Data Bank.
H M Berman, J Westbrook, Z Feng, G Gilliland, T N Bhat, H Weissig, I N Shindyalov, P E Bourne. Nucleic Acids Res 2000
50


Intrinsic Disorder in Tetratricopeptide Repeat Proteins.
Nathan W Van Bibber, Cornelia Haerle, Roy Khalife, Bin Xue, Vladimir N Uversky. Int J Mol Sci 2020
1
100

CDF it all: consensus prediction of intrinsically disordered proteins based on various cumulative distribution functions.
Bin Xue, Christopher J Oldfield, A Keith Dunker, Vladimir N Uversky. FEBS Lett 2009
98
50

The triple power of D³: protein intrinsic disorder in degenerative diseases.
Vladimir N Uversky. Front Biosci (Landmark Ed) 2014
48
50

Natively unfolded C-terminal domain of caldesmon remains substantially unstructured after the effective binding to calmodulin.
Sergei E Permyakov, Ian S Millett, Sebastian Doniach, Eugene A Permyakov, Vladimir N Uversky. Proteins 2003
70
50


Personalized copy number and segmental duplication maps using next-generation sequencing.
Can Alkan, Jeffrey M Kidd, Tomas Marques-Bonet, Gozde Aksay, Francesca Antonacci, Fereydoun Hormozdiari, Jacob O Kitzman, Carl Baker, Maika Malig, Onur Mutlu,[...]. Nat Genet 2009
442
50

Fuzzy complexes: a more stochastic view of protein function.
Monika Fuxreiter, Peter Tompa. Adv Exp Med Biol 2012
151
50


The product of the H19 gene may function as an RNA.
C I Brannan, E C Dees, R S Ingram, S M Tilghman. Mol Cell Biol 1990
778
50

Long noncoding RNAs: Lessons from genomic imprinting.
Chandrasekhar Kanduri. Biochim Biophys Acta 2016
112
50

Dynamics of the Transcriptome during Human Spermatogenesis: Predicting the Potential Key Genes Regulating Male Gametes Generation.
Zijue Zhu, Chong Li, Shi Yang, Ruhui Tian, Junlong Wang, Qingqing Yuan, Hui Dong, Zuping He, Shengyue Wang, Zheng Li. Sci Rep 2016
38
50

Occurrence and functional significance of the transcriptome in bovine (Bos taurus) spermatozoa.
Sellappan Selvaraju, Sivashanmugam Parthipan, Lakshminarayana Somashekar, Atul P Kolte, B Krishnan Binsila, Arunachalam Arangasamy, Janivara Parameshwaraiah Ravindra. Sci Rep 2017
38
50

Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species.
Colin Kern, Ying Wang, James Chitwood, Ian Korf, Mary Delany, Hans Cheng, Juan F Medrano, Alison L Van Eenennaam, Catherine Ernst, Pablo Ross,[...]. BMC Genomics 2018
47
50

A novel testis-specific long noncoding RNA, Tesra, activates the Prss42/Tessp-2 gene during mouse spermatogenesis†.
Yui Satoh, Natsumi Takei, Shohei Kawamura, Nobuhiko Takahashi, Tomoya Kotani, Atsushi P Kimura. Biol Reprod 2019
9
50

Single-cell RNA-seq uncovers dynamic processes and critical regulators in mouse spermatogenesis.
Yao Chen, Yuxuan Zheng, Yun Gao, Zhen Lin, Suming Yang, Tongtong Wang, Qiu Wang, Nannan Xie, Rong Hua, Mingxi Liu,[...]. Cell Res 2018
97
50

LNCipedia: a database for annotated human lncRNA transcript sequences and structures.
Pieter-Jan Volders, Kenny Helsens, Xiaowei Wang, Björn Menten, Lennart Martens, Kris Gevaert, Jo Vandesompele, Pieter Mestdagh. Nucleic Acids Res 2013
342
50

Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation.
Marcel E Dinger, Paulo P Amaral, Tim R Mercer, Ken C Pang, Stephen J Bruce, Brooke B Gardiner, Marjan E Askarian-Amiri, Kelin Ru, Giulia Soldà, Cas Simons,[...]. Genome Res 2008
557
50

Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs.
John L Rinn, Michael Kertesz, Jordon K Wang, Sharon L Squazzo, Xiao Xu, Samantha A Brugmann, L Henry Goodnough, Jill A Helms, Peggy J Farnham, Eran Segal,[...]. Cell 2007
50

Stability, delivery and functions of human sperm RNAs at fertilization.
Edward Sendler, Graham D Johnson, Shihong Mao, Robert J Goodrich, Michael P Diamond, Russ Hauser, Stephen A Krawetz. Nucleic Acids Res 2013
162
50

Non-coding RNA: It's Not Junk.
C Richard Boland. Dig Dis Sci 2017
23
50

Long noncoding RNA SYISL regulates myogenesis by interacting with polycomb repressive complex 2.
Jian Jun Jin, Wei Lv, Pan Xia, Zai Yan Xu, An Dai Zheng, Xiao Jing Wang, Shan Shan Wang, Rui Zeng, Hong Mei Luo, Guo Liang Li,[...]. Proc Natl Acad Sci U S A 2018
44
50

Diverse Phenotypes and Specific Transcription Patterns in Twenty Mouse Lines with Ablated LincRNAs.
Ka-Man Venus Lai, Guochun Gong, Amanda Atanasio, José Rojas, Joseph Quispe, Julita Posca, Derek White, Mei Huang, Daria Fedorova, Craig Grant,[...]. PLoS One 2015
39
50


Sperm Differentiation: The Role of Trafficking of Proteins.
Maria E Teves, Eduardo R S Roldan, Diego Krapf, Jerome F Strauss, Virali Bhagat, Paulene Sapao. Int J Mol Sci 2020
7
50

LncTarD: a manually-curated database of experimentally-supported functional lncRNA-target regulations in human diseases.
Hongying Zhao, Jian Shi, Yunpeng Zhang, Aimin Xie, Lei Yu, Caiyu Zhang, Junjie Lei, Haotian Xu, Zhijun Leng, Tengyue Li,[...]. Nucleic Acids Res 2020
30
50

The STAT3-binding long noncoding RNA lnc-DC controls human dendritic cell differentiation.
Pin Wang, Yiquan Xue, Yanmei Han, Li Lin, Cong Wu, Sheng Xu, Zhengping Jiang, Junfang Xu, Qiuyan Liu, Xuetao Cao. Science 2014
657
50

Predicting RNA-protein interactions using only sequence information.
Usha K Muppirala, Vasant G Honavar, Drena Dobbs. BMC Bioinformatics 2011
205
50

Profiling of testis-specific long noncoding RNAs in mice.
Seong Hyeon Hong, Jun Tae Kwon, Jihye Kim, Juri Jeong, Jaehwan Kim, Seonhee Lee, Chunghee Cho. BMC Genomics 2018
27
50

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses.
Moran N Cabili, Cole Trapnell, Loyal Goff, Magdalena Koziol, Barbara Tazon-Vega, Aviv Regev, John L Rinn. Genes Dev 2011
50

lncRNome: a comprehensive knowledgebase of human long noncoding RNAs.
Deeksha Bhartiya, Koustav Pal, Sourav Ghosh, Shruti Kapoor, Saakshi Jalali, Bharat Panwar, Sakshi Jain, Satish Sati, Shantanu Sengupta, Chetana Sachidanandan,[...]. Database (Oxford) 2013
100
50

Multiple knockout mouse models reveal lincRNAs are required for life and brain development.
Martin Sauvageau, Loyal A Goff, Simona Lodato, Boyan Bonev, Abigail F Groff, Chiara Gerhardinger, Diana B Sanchez-Gomez, Ezgi Hacisuleyman, Eric Li, Matthew Spence,[...]. Elife 2013
458
50

eRNAs are required for p53-dependent enhancer activity and gene transcription.
Carlos A Melo, Jarno Drost, Patrick J Wijchers, Harmen van de Werken, Elzo de Wit, Joachim A F Oude Vrielink, Ran Elkon, Sónia A Melo, Nicolas Léveillé, Raghu Kalluri,[...]. Mol Cell 2013
357
50

Silencing of long noncoding RNA MALAT1 by miR-101 and miR-217 inhibits proliferation, migration, and invasion of esophageal squamous cell carcinoma cells.
Xinyu Wang, Meng Li, Zhiqiong Wang, Sichong Han, Xiaohu Tang, Yunxia Ge, Liqing Zhou, Changchun Zhou, Qipeng Yuan, Ming Yang. J Biol Chem 2015
222
50

HoxBlinc RNA Recruits Set1/MLL Complexes to Activate Hox Gene Expression Patterns and Mesoderm Lineage Development.
Changwang Deng, Ying Li, Lei Zhou, Joonseok Cho, Bhavita Patel, Naohiro Terada, Yangqiu Li, Jörg Bungert, Yi Qiu, Suming Huang. Cell Rep 2016
40
50

Expression profiles and characteristics of human lncRNA in normal and asthenozoospermia sperm†.
Xiaoning Zhang, Peng Zhang, Dandan Song, Suping Xiong, Hongyan Zhang, Jianbo Fu, Fengxin Gao, Houyang Chen, Xuhui Zeng. Biol Reprod 2019
23
50

lncRNAdb v2.0: expanding the reference database for functional long noncoding RNAs.
Xiu Cheng Quek, Daniel W Thomson, Jesper L V Maag, Nenad Bartonicek, Bethany Signal, Michael B Clark, Brian S Gloss, Marcel E Dinger. Nucleic Acids Res 2015
347
50

Kcnq1ot1 noncoding RNA mediates transcriptional gene silencing by interacting with Dnmt1.
Faizaan Mohammad, Tanmoy Mondal, Natalia Guseva, Gaurav Kumar Pandey, Chandrasekhar Kanduri. Development 2010
188
50

Centromere protein B null mice are mitotically and meiotically normal but have lower body and testis weights.
D F Hudson, K J Fowler, E Earle, R Saffery, P Kalitsis, H Trowell, J Hill, N G Wreford, D M de Kretser, M R Cancilla,[...]. J Cell Biol 1998
178
50

HOTAIR: An Oncogenic Long Non-Coding RNA in Human Cancer.
Qing Tang, Swei Sunny Hann. Cell Physiol Biochem 2018
120
50


Identification, functional prediction, and key lncRNA verification of cold stress-related lncRNAs in rats liver.
Hong Ji, Chunyang Niu, Xuelong Zhan, Jing Xu, Shuai Lian, Bin Xu, Jingru Guo, Li Zhen, Huanmin Yang, Shize Li,[...]. Sci Rep 2020
3
50

Small RNA in spermatogenesis and male infertility.
Singh Rajender, Corey Meador, Ashok Agarwal. Front Biosci (Schol Ed) 2012
8
50


Long intronic noncoding RNA transcription: expression noise or expression choice?
Rodrigo Louro, Anna S Smirnova, Sergio Verjovski-Almeida. Genomics 2009
168
50

Intronic RNAs mediate EZH2 regulation of epigenetic targets.
Sònia Guil, Marta Soler, Anna Portela, Jordi Carrère, Elena Fonalleras, Antonio Gómez, Alberto Villanueva, Manel Esteller. Nat Struct Mol Biol 2012
124
50

Long noncoding RNAs: new insights in modulating mammalian spermatogenesis.
Bahlibi Weldegebriall Sahlu, Shanjiang Zhao, Xiuge Wang, Saqib Umer, Huiying Zou, Jinming Huang, Huabin Zhu. J Anim Sci Biotechnol 2020
10
50

Transcriptome sequencing during mouse brain development identifies long non-coding RNAs functionally involved in neurogenic commitment.
Julieta Aprea, Silvia Prenninger, Martina Dori, Tanay Ghosh, Laura Sebastian Monasor, Elke Wessendorf, Sara Zocher, Simone Massalini, Dimitra Alexopoulou, Mathias Lesche,[...]. EMBO J 2013
140
50

Ror2 signaling regulates Golgi structure and transport through IFT20 for tumor invasiveness.
Michiru Nishita, Seung-Yeol Park, Tadashi Nishio, Koki Kamizaki, ZhiChao Wang, Kota Tamada, Toru Takumi, Ryuju Hashimoto, Hiroki Otani, Gregory J Pazour,[...]. Sci Rep 2017
50


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.