A citation-based method for searching scientific literature

Fabio Pessina, Fabio Giavazzi, Yandong Yin, Ubaldo Gioia, Valerio Vitelli, Alessandro Galbiati, Sara Barozzi, Massimiliano Garre, Amanda Oldani, Andrew Flaus, Roberto Cerbino, Dario Parazzoli, Eli Rothenberg, Fabrizio d'Adda di Fagagna. Nat Cell Biol 2019
Times Cited: 91







List of co-cited articles
1455 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Long noncoding RNA LINP1 regulates repair of DNA double-strand breaks in triple-negative breast cancer.
Youyou Zhang, Qun He, Zhongyi Hu, Yi Feng, Lingling Fan, Zhaoqing Tang, Jiao Yuan, Weiwei Shan, Chunsheng Li, Xiaowen Hu,[...]. Nat Struct Mol Biol 2016
152
8

FUS Phase Separation Is Modulated by a Molecular Chaperone and Methylation of Arginine Cation-π Interactions.
Seema Qamar, GuoZhen Wang, Suzanne J Randle, Francesco Simone Ruggeri, Juan A Varela, Julie Qiaojin Lin, Emma C Phillips, Akinori Miyashita, Declan Williams, Florian Ströhl,[...]. Cell 2018
300
8

Pi-Pi contacts are an overlooked protein feature relevant to phase separation.
Robert McCoy Vernon, Paul Andrew Chong, Brian Tsang, Tae Hun Kim, Alaji Bah, Patrick Farber, Hong Lin, Julie Deborah Forman-Kay. Elife 2018
222
8

Cancer Mutations of the Tumor Suppressor SPOP Disrupt the Formation of Active, Phase-Separated Compartments.
Jill J Bouchard, Joel H Otero, Daniel C Scott, Elzbieta Szulc, Erik W Martin, Nafiseh Sabri, Daniele Granata, Melissa R Marzahn, Kresten Lindorff-Larsen, Xavier Salvatella,[...]. Mol Cell 2018
115
8

RNA-Induced Conformational Switching and Clustering of G3BP Drive Stress Granule Assembly by Condensation.
Jordina Guillén-Boixet, Andrii Kopach, Alex S Holehouse, Sina Wittmann, Marcus Jahnel, Raimund Schlüßler, Kyoohyun Kim, Irmela R E A Trussina, Jie Wang, Daniel Mateju,[...]. Cell 2020
151
8

Rad52 Inverse Strand Exchange Drives RNA-Templated DNA Double-Strand Break Repair.
Olga M Mazina, Havva Keskin, Kritika Hanamshet, Francesca Storici, Alexander V Mazin. Mol Cell 2017
65
12

Phase separation of a yeast prion protein promotes cellular fitness.
Titus M Franzmann, Marcus Jahnel, Andrei Pozniakovsky, Julia Mahamid, Alex S Holehouse, Elisabeth Nüske, Doris Richter, Wolfgang Baumeister, Stephan W Grill, Rohit V Pappu,[...]. Science 2018
256
8

Super-enhancers in the control of cell identity and disease.
Denes Hnisz, Brian J Abraham, Tong Ihn Lee, Ashley Lau, Violaine Saint-André, Alla A Sigova, Heather A Hoke, Richard A Young. Cell 2013
8

RNA polymerase III is required for the repair of DNA double-strand breaks by homologous recombination.
Sijie Liu, Yu Hua, Jingna Wang, Lingyan Li, Junjie Yuan, Bo Zhang, Ziyang Wang, Jianguo Ji, Daochun Kong. Cell 2021
19
42

The Centrosome Is a Selective Condensate that Nucleates Microtubules by Concentrating Tubulin.
Jeffrey B Woodruff, Beatriz Ferreira Gomes, Per O Widlund, Julia Mahamid, Alf Honigmann, Anthony A Hyman. Cell 2017
260
7

Increased chromosome mobility facilitates homology search during recombination.
Judith Miné-Hattab, Rodney Rothstein. Nat Cell Biol 2012
219
7

Perinuclear tethers license telomeric DSBs for a broad kinesin- and NPC-dependent DNA repair process.
Daniel K C Chung, Janet N Y Chan, Jonathan Strecker, Wei Zhang, Sasha Ebrahimi-Ardebili, Thomas Lu, Karan J Abraham, Daniel Durocher, Karim Mekhail. Nat Commun 2015
62
11

Nuclear phosphorylated Dicer processes double-stranded RNA in response to DNA damage.
Kaspar Burger, Margarita Schlackow, Martin Potts, Svenja Hester, Shabaz Mohammed, Monika Gullerova. J Cell Biol 2017
40
17


Human senataxin resolves RNA/DNA hybrids formed at transcriptional pause sites to promote Xrn2-dependent termination.
Konstantina Skourti-Stathaki, Nicholas J Proudfoot, Natalia Gromak. Mol Cell 2011
430
7

Non-homologous DNA end joining and alternative pathways to double-strand break repair.
Howard H Y Chang, Nicholas R Pannunzio, Noritaka Adachi, Michael R Lieber. Nat Rev Mol Cell Biol 2017
547
7

A small RNA response at DNA ends in Drosophila.
Katharina M Michalik, Romy Böttcher, Klaus Förstemann. Nucleic Acids Res 2012
95
7



The ATM repair pathway inhibits RNA polymerase I transcription in response to chromosome breaks.
Michael Kruhlak, Elizabeth E Crouch, Marika Orlov, Carolina Montaño, Stanislaw A Gorski, André Nussenzweig, Tom Misteli, Robert D Phair, Rafael Casellas. Nature 2007
201
7

Changes in chromatin structure and mobility in living cells at sites of DNA double-strand breaks.
Michael J Kruhlak, Arkady Celeste, Graham Dellaire, Oscar Fernandez-Capetillo, Waltraud G Müller, James G McNally, David P Bazett-Jones, André Nussenzweig. J Cell Biol 2006
378
7

RNaseH1 regulates TERRA-telomeric DNA hybrids and telomere maintenance in ALT tumour cells.
Rajika Arora, Yongwoo Lee, Harry Wischnewski, Catherine M Brun, Tobias Schwarz, Claus M Azzalin. Nat Commun 2014
201
7

Cellular sensing by phase separation: Using the process, not just the products.
Haneul Yoo, Catherine Triandafillou, D Allan Drummond. J Biol Chem 2019
66
10

Mediator Condensates Localize Signaling Factors to Key Cell Identity Genes.
Alicia V Zamudio, Alessandra Dall'Agnese, Jonathan E Henninger, John C Manteiga, Lena K Afeyan, Nancy M Hannett, Eliot L Coffey, Charles H Li, Ozgur Oksuz, Benjamin R Sabari,[...]. Mol Cell 2019
62
11

RNA transcription modulates phase transition-driven nuclear body assembly.
Joel Berry, Stephanie C Weber, Nilesh Vaidya, Mikko Haataja, Clifford P Brangwynne. Proc Natl Acad Sci U S A 2015
224
7

Evidence for DNA-mediated nuclear compartmentalization distinct from phase separation.
David Trombley McSwiggen, Anders S Hansen, Sheila S Teves, Hervé Marie-Nelly, Yvonne Hao, Alec Basil Heckert, Kayla K Umemoto, Claire Dugast-Darzacq, Robert Tjian, Xavier Darzacq. Elife 2019
81
8

Comprehensive mapping of long-range interactions reveals folding principles of the human genome.
Erez Lieberman-Aiden, Nynke L van Berkum, Louise Williams, Maxim Imakaev, Tobias Ragoczy, Agnes Telling, Ido Amit, Bryan R Lajoie, Peter J Sabo, Michael O Dorschner,[...]. Science 2009
7

Stoichiometry controls activity of phase-separated clusters of actin signaling proteins.
Lindsay B Case, Xu Zhang, Jonathon A Ditlev, Michael K Rosen. Science 2019
120
7


RNA at DNA Double-Strand Breaks: The Challenge of Dealing with DNA:RNA Hybrids.
Judit Domingo-Prim, Franziska Bonath, Neus Visa. Bioessays 2020
12
58

RNA m6A methylation regulates the ultraviolet-induced DNA damage response.
Yang Xiang, Benoit Laurent, Chih-Hung Hsu, Sigrid Nachtergaele, Zhike Lu, Wanqiang Sheng, Chuanyun Xu, Hao Chen, Jian Ouyang, Siqing Wang,[...]. Nature 2017
369
7

N6-methyladenosine regulates the stability of RNA:DNA hybrids in human cells.
Abdulkadir Abakir, Tom C Giles, Agnese Cristini, Jeremy M Foster, Nan Dai, Marta Starczak, Alejandro Rubio-Roldan, Miaomiao Li, Maria Eleftheriou, James Crutchley,[...]. Nat Genet 2020
58
12


Kinase-controlled phase transition of membraneless organelles in mitosis.
Arpan Kumar Rai, Jia-Xuan Chen, Matthias Selbach, Lucas Pelkmans. Nature 2018
135
7

Valence and patterning of aromatic residues determine the phase behavior of prion-like domains.
Erik W Martin, Alex S Holehouse, Ivan Peran, Mina Farag, J Jeremias Incicco, Anne Bremer, Christy R Grace, Andrea Soranno, Rohit V Pappu, Tanja Mittag. Science 2020
162
7

Sequence Determinants of Intracellular Phase Separation by Complex Coacervation of a Disordered Protein.
Chi W Pak, Martyna Kosno, Alex S Holehouse, Shae B Padrick, Anuradha Mittal, Rustam Ali, Ali A Yunus, David R Liu, Rohit V Pappu, Michael K Rosen. Mol Cell 2016
290
7

Competing Protein-RNA Interaction Networks Control Multiphase Intracellular Organization.
David W Sanders, Nancy Kedersha, Daniel S W Lee, Amy R Strom, Victoria Drake, Joshua A Riback, Dan Bracha, Jorine M Eeftens, Allana Iwanicki, Alicia Wang,[...]. Cell 2020
136
7

Interaction of FUS and HDAC1 regulates DNA damage response and repair in neurons.
Wen-Yuan Wang, Ling Pan, Susan C Su, Emma J Quinn, Megumi Sasaki, Jessica C Jimenez, Ian R A Mackenzie, Eric J Huang, Li-Huei Tsai. Nat Neurosci 2013
238
7

DNA damage during the G0/G1 phase triggers RNA-templated, Cockayne syndrome B-dependent homologous recombination.
Leizhen Wei, Satoshi Nakajima, Stefanie Böhm, Kara A Bernstein, Zhiyuan Shen, Michael Tsang, Arthur S Levine, Li Lan. Proc Natl Acad Sci U S A 2015
83
8

The RNA-binding protein fused in sarcoma (FUS) functions downstream of poly(ADP-ribose) polymerase (PARP) in response to DNA damage.
Adam S Mastrocola, Sang Hwa Kim, Anthony T Trinh, Lance A Rodenkirch, Randal S Tibbetts. J Biol Chem 2013
130
7

G3BP1 Is a Tunable Switch that Triggers Phase Separation to Assemble Stress Granules.
Peiguo Yang, Cécile Mathieu, Regina-Maria Kolaitis, Peipei Zhang, James Messing, Ugur Yurtsever, Zemin Yang, Jinjun Wu, Yuxin Li, Qingfei Pan,[...]. Cell 2020
153
7

The control of DNA repair by the cell cycle.
Nicole Hustedt, Daniel Durocher. Nat Cell Biol 2016
304
7

53BP1 is a reader of the DNA-damage-induced H2A Lys 15 ubiquitin mark.
Amélie Fradet-Turcotte, Marella D Canny, Cristina Escribano-Díaz, Alexandre Orthwein, Charles C Y Leung, Hao Huang, Marie-Claude Landry, Julianne Kitevski-LeBlanc, Sylvie M Noordermeer, Frank Sicheri,[...]. Nature 2013
403
7

Nuclear body phase separation drives telomere clustering in ALT cancer cells.
Huaiying Zhang, Rongwei Zhao, Jason Tones, Michel Liu, Robert L Dilley, David M Chenoweth, Roger A Greenberg, Michael A Lampson. Mol Biol Cell 2020
29
24


Single molecule microscopy reveals key physical features of repair foci in living cells.
Judith Miné-Hattab, Mathias Heltberg, Marie Villemeur, Chloé Guedj, Thierry Mora, Aleksandra M Walczak, Maxime Dahan, Angela Taddei. Elife 2021
12
58

MRE11-RAD50-NBS1 Complex Is Sufficient to Promote Transcription by RNA Polymerase II at Double-Strand Breaks by Melting DNA Ends.
Sheetal Sharma, Roopesh Anand, Xuzhu Zhang, Sofia Francia, Flavia Michelini, Alessandro Galbiati, Hannah Williams, Daryl A Ronato, Jean-Yves Masson, Eli Rothenberg,[...]. Cell Rep 2021
13
53

BRCA2 promotes DNA-RNA hybrid resolution by DDX5 helicase at DNA breaks to facilitate their repair‡.
Gaetana Sessa, Belén Gómez-González, Sonia Silva, Carmen Pérez-Calero, Romane Beaurepere, Sonia Barroso, Sylvain Martineau, Charlotte Martin, Åsa Ehlén, Juan S Martínez,[...]. EMBO J 2021
17
41

Regulation of Transmembrane Signaling by Phase Separation.
Lindsay B Case, Jonathon A Ditlev, Michael K Rosen. Annu Rev Biophys 2019
68
8

Mechanisms that regulate localization of a DNA double-strand break to the nuclear periphery.
Pranav Oza, Sue L Jaspersen, Adriana Miele, Job Dekker, Craig L Peterson. Genes Dev 2009
225
6


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.