A citation-based method for searching scientific literature

Xiaoyu He, Shanyu Chen, Ruilin Li, Xinyin Han, Zhipeng He, Danyang Yuan, Shuying Zhang, Xiaohong Duan, Beifang Niu. Brief Bioinform 2021
Times Cited: 4







List of co-cited articles
1 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


ERCC2 Helicase Domain Mutations Confer Nucleotide Excision Repair Deficiency and Drive Cisplatin Sensitivity in Muscle-Invasive Bladder Cancer.
Qiang Li, Alexis W Damish, Zoë Frazier, David Liu, Elizaveta Reznichenko, Atanas Kamburov, Andrew Bell, Huiyong Zhao, Emmet J Jordan, S Paul Gao,[...]. Clin Cancer Res 2019
59
25

Whole-genome sequencing identifies ADGRG6 enhancer mutations and FRS2 duplications as angiogenesis-related drivers in bladder cancer.
Song Wu, Tong Ou, Nianzeng Xing, Jiang Lu, Shengqing Wan, Changxi Wang, Xi Zhang, Feiya Yang, Yi Huang, Zhiming Cai. Nat Commun 2019
35
25

A Retrospective Analysis of Precision Medicine Outcomes in Patients With Advanced Cancer Reveals Improved Progression-Free Survival Without Increased Health Care Costs.
Derrick S Haslem, S Burke Van Norman, Gail Fulde, Andrew J Knighton, Tom Belnap, Allison M Butler, Sharanya Rhagunath, David Newman, Heather Gilbert, Brian P Tudor,[...]. J Oncol Pract 2017
52
25

A practical guide to bladder cancer pathology.
Eva Compérat, Justine Varinot, Julien Moroch, Caroline Eymerit-Morin, Fadi Brimo. Nat Rev Urol 2018
21
25

Cancer statistics, 2019.
Rebecca L Siegel, Kimberly D Miller, Ahmedin Jemal. CA Cancer J Clin 2019
25

Significance of TP53 mutation in bladder cancer disease progression and drug selection.
Guang Wu, Fei Wang, Kai Li, Shugen Li, Chunchun Zhao, Caibin Fan, Jianqing Wang. PeerJ 2019
14
25

Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal.
Jianjiong Gao, Bülent Arman Aksoy, Ugur Dogrusoz, Gideon Dresdner, Benjamin Gross, S Onur Sumer, Yichao Sun, Anders Jacobsen, Rileen Sinha, Erik Larsson,[...]. Sci Signal 2013
25

Genomic Approaches to Understanding Response and Resistance to Immunotherapy.
David A Braun, Kelly P Burke, Eliezer M Van Allen. Clin Cancer Res 2016
91
25

Bladder cancer: a disease ripe for major advances.
Jong Chul Park, Noah M Hahn. Clin Adv Hematol Oncol 2014
18
25

Invasive Bladder Cancer: Genomic Insights and Therapeutic Promise.
Jaegil Kim, Rehan Akbani, Chad J Creighton, Seth P Lerner, John N Weinstein, Gad Getz, David J Kwiatkowski. Clin Cancer Res 2015
82
25

Cancer. TERT promoter mutations and telomerase reactivation in urothelial cancer.
Sumit Borah, Linghe Xi, Arthur J Zaug, Natasha M Powell, Garrett M Dancik, Scott B Cohen, James C Costello, Dan Theodorescu, Thomas R Cech. Science 2015
205
25

The evolution of bladder cancer genomics: What have we learned and how can we use it?
François Audenet, Kyrollis Attalla, John P Sfakianos. Urol Oncol 2018
39
25

Identification of an immunotherapy-responsive molecular subtype of bladder cancer.
Bic-Na Song, Seon-Kyu Kim, Jeong-Yeon Mun, Young-Deuk Choi, Sun-Hee Leem, In-Sun Chu. EBioMedicine 2019
37
25

Recurrence and progression of disease in non-muscle-invasive bladder cancer: from epidemiology to treatment strategy.
Bas W G van Rhijn, Maximilian Burger, Yair Lotan, Eduardo Solsona, Christian G Stief, Richard J Sylvester, J Alfred Witjes, Alexandre R Zlotta. Eur Urol 2009
458
25

Development and validation of a clinical cancer genomic profiling test based on massively parallel DNA sequencing.
Garrett M Frampton, Alex Fichtenholtz, Geoff A Otto, Kai Wang, Sean R Downing, Jie He, Michael Schnall-Levin, Jared White, Eric M Sanford, Peter An,[...]. Nat Biotechnol 2013
25


Molecular alterations associated with bladder cancer progression.
Marta Sánchez-Carbayo, Carlos Cordon-Cardó. Semin Oncol 2007
52
25

Bladder cancer.
Donald S Kaufman, William U Shipley, Adam S Feldman. Lancet 2009
751
25

CNSA: a data repository for archiving omics data.
Xueqin Guo, Fengzhen Chen, Fei Gao, Ling Li, Ke Liu, Lijin You, Cong Hua, Fan Yang, Wanliang Liu, Chunhua Peng,[...]. Database (Oxford) 2020
66
25

Her2 alterations in muscle-invasive bladder cancer: Patient selection beyond protein expression for targeted therapy.
Bernhard Kiss, Alexander W Wyatt, James Douglas, Veronika Skuginna, Fan Mo, Shawn Anderson, Diana Rotzer, Achim Fleischmann, Vera Genitsch, Tetsutaro Hayashi,[...]. Sci Rep 2017
53
25

Multi-omics analysis of tumor mutation burden combined with immune infiltrates in bladder urothelial carcinoma.
Chuanjie Zhang, Luping Shen, Feng Qi, JinCheng Wang, Jun Luo. J Cell Physiol 2020
26
25

Integrated Proteogenomic Characterization of HBV-Related Hepatocellular Carcinoma.
Qiang Gao, Hongwen Zhu, Liangqing Dong, Weiwei Shi, Ran Chen, Zhijian Song, Chen Huang, Junqiang Li, Xiaowei Dong, Yanting Zhou,[...]. Cell 2019
225
25

BreakDancer: Identification of Genomic Structural Variation from Paired-End Read Mapping.
Xian Fan, Travis E Abbott, David Larson, Ken Chen. Curr Protoc Bioinformatics 2014
83
25


The repertoire of mutational signatures in human cancer.
Ludmil B Alexandrov, Jaegil Kim, Nicholas J Haradhvala, Mi Ni Huang, Alvin Wei Tian Ng, Yang Wu, Arnoud Boot, Kyle R Covington, Dmitry A Gordenin, Erik N Bergstrom,[...]. Nature 2020
811
25

Comprehensive Characterization of Cancer Driver Genes and Mutations.
Matthew H Bailey, Collin Tokheim, Eduard Porta-Pardo, Sohini Sengupta, Denis Bertrand, Amila Weerasinghe, Antonio Colaprico, Michael C Wendl, Jaegil Kim, Brendan Reardon,[...]. Cell 2018
798
25

Maftools: efficient and comprehensive analysis of somatic variants in cancer.
Anand Mayakonda, De-Chen Lin, Yassen Assenov, Christoph Plass, H Phillip Koeffler. Genome Res 2018
894
25

The Ensembl Variant Effect Predictor.
William McLaren, Laurent Gil, Sarah E Hunt, Harpreet Singh Riat, Graham R S Ritchie, Anja Thormann, Paul Flicek, Fiona Cunningham. Genome Biol 2016
25

Detecting and annotating genetic variations using the HugeSeq pipeline.
Hugo Y K Lam, Cuiping Pan, Michael J Clark, Phil Lacroute, Rui Chen, Rajini Haraksingh, Maeve O'Huallachain, Mark B Gerstein, Jeffrey M Kidd, Carlos D Bustamante,[...]. Nat Biotechnol 2012
76
25

Identification of cancer driver genes based on nucleotide context.
Felix Dietlein, Donate Weghorn, Amaro Taylor-Weiner, André Richters, Brendan Reardon, David Liu, Eric S Lander, Eliezer M Van Allen, Shamil R Sunyaev. Nat Genet 2020
70
25

SeqMule: automated pipeline for analysis of human exome/genome sequencing data.
Yunfei Guo, Xiaolei Ding, Yufeng Shen, Gholson J Lyon, Kai Wang. Sci Rep 2015
37
25

Protein-structure-guided discovery of functional mutations across 19 cancer types.
Beifang Niu, Adam D Scott, Sohini Sengupta, Matthew H Bailey, Prag Batra, Jie Ning, Matthew A Wyczalkowski, Wen-Wei Liang, Qunyuan Zhang, Michael D McLellan,[...]. Nat Genet 2016
88
25

The landscape of cancer genes and mutational processes in breast cancer.
Philip J Stephens, Patrick S Tarpey, Helen Davies, Peter Van Loo, Chris Greenman, David C Wedge, Serena Nik-Zainal, Sancha Martin, Ignacio Varela, Graham R Bignell,[...]. Nature 2012
25

Break-seq reveals hydroxyurea-induced chromosome fragility as a result of unscheduled conflict between DNA replication and transcription.
Elizabeth A Hoffman, Andrew McCulley, Brian Haarer, Remigiusz Arnak, Wenyi Feng. Genome Res 2015
54
25

Bpipe: a tool for running and managing bioinformatics pipelines.
Simon P Sadedin, Bernard Pope, Alicia Oshlack. Bioinformatics 2012
85
25

A compendium of mutational cancer driver genes.
Francisco Martínez-Jiménez, Ferran Muiños, Inés Sentís, Jordi Deu-Pons, Iker Reyes-Salazar, Claudia Arnedo-Pac, Loris Mularoni, Oriol Pich, Jose Bonet, Hanna Kranas,[...]. Nat Rev Cancer 2020
185
25

Germline cancer susceptibility gene variants, somatic second hits, and survival outcomes in patients with resected pancreatic cancer.
Matthew B Yurgelun, Anu B Chittenden, Vicente Morales-Oyarvide, Douglas A Rubinson, Richard F Dunne, Margaret M Kozak, Zhi Rong Qian, Marisa W Welch, Lauren K Brais, Annacarolina Da Silva,[...]. Genet Med 2019
94
25


iWhale: a computational pipeline based on Docker and SCons for detection and annotation of somatic variants in cancer WES data.
Andrea Binatti, Silvia Bresolin, Stefania Bortoluzzi, Alessandro Coppe. Brief Bioinform 2021
3
33

VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing.
Daniel C Koboldt, Qunyuan Zhang, David E Larson, Dong Shen, Michael D McLellan, Ling Lin, Christopher A Miller, Elaine R Mardis, Li Ding, Richard K Wilson. Genome Res 2012
25

Imputation of exome sequence variants into population- based samples and blood-cell-trait-associated loci in African Americans: NHLBI GO Exome Sequencing Project.
Paul L Auer, Jill M Johnsen, Andrew D Johnson, Benjamin A Logsdon, Leslie A Lange, Michael A Nalls, Guosheng Zhang, Nora Franceschini, Keolu Fox, Ethan M Lange,[...]. Am J Hum Genet 2012
92
25

The ExAC browser: displaying reference data information from over 60 000 exomes.
Konrad J Karczewski, Ben Weisburd, Brett Thomas, Matthew Solomonson, Douglas M Ruderfer, David Kavanagh, Tymor Hamamsy, Monkol Lek, Kaitlin E Samocha, Beryl B Cummings,[...]. Nucleic Acids Res 2017
329
25

SNVer: a statistical tool for variant calling in analysis of pooled or individual next-generation sequencing data.
Zhi Wei, Wei Wang, Pingzhao Hu, Gholson J Lyon, Hakon Hakonarson. Nucleic Acids Res 2011
167
25

Nextflow enables reproducible computational workflows.
Paolo Di Tommaso, Maria Chatzou, Evan W Floden, Pablo Prieto Barja, Emilio Palumbo, Cedric Notredame. Nat Biotechnol 2017
428
25

fastp: an ultra-fast all-in-one FASTQ preprocessor.
Shifu Chen, Yanqing Zhou, Yaru Chen, Jia Gu. Bioinformatics 2018
25

Snakemake--a scalable bioinformatics workflow engine.
Johannes Köster, Sven Rahmann. Bioinformatics 2012
845
25

Biomarker definitions and their applications.
Robert M Califf. Exp Biol Med (Maywood) 2018
234
25


BreakDancer: an algorithm for high-resolution mapping of genomic structural variation.
Ken Chen, John W Wallis, Michael D McLellan, David E Larson, Joelle M Kalicki, Craig S Pohl, Sean D McGrath, Michael C Wendl, Qunyuan Zhang, Devin P Locke,[...]. Nat Methods 2009
914
25

GenomeVIP: a cloud platform for genomic variant discovery and interpretation.
R Jay Mashl, Adam D Scott, Kuan-Lin Huang, Matthew A Wyczalkowski, Christopher J Yoon, Beifang Niu, Erin DeNardo, Venkata D Yellapantula, Robert E Handsaker, Ken Chen,[...]. Genome Res 2017
11
25


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.