A citation-based method for searching scientific literature

Marina Kovalenko, Serkan Erdin, Marissa A Andrew, Jason St Claire, Melissa Shaughnessey, Leroy Hubert, João Luís Neto, Alexei Stortchevoi, Daniel M Fass, Ricardo Mouro Pinto, Stephen J Haggarty, John H Wilson, Michael E Talkowski, Vanessa C Wheeler. Elife 2020
Times Cited: 5







List of co-cited articles
62 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Deregulation of HDAC1 by p25/Cdk5 in neurotoxicity.
Dohoon Kim, Christopher L Frank, Matthew M Dobbin, Rachel K Tsunemoto, Weihong Tu, Peter L Peng, Ji-Song Guan, Byung-Hoon Lee, Lily Y Moy, Paola Giusti,[...]. Neuron 2008
224
20

The histone deacetylase HDAC3 is essential for Purkinje cell function, potentially complicating the use of HDAC inhibitors in SCA1.
Anand Venkatraman, Yuan-Shih Hu, Alessandro Didonna, Marija Cvetanovic, Aleksandar Krbanjevic, Patrice Bilesimo, Puneet Opal. Hum Mol Genet 2014
29
20

Long glutamine tracts cause nuclear localization of a novel form of huntingtin in medium spiny striatal neurons in HdhQ92 and HdhQ111 knock-in mice.
V C Wheeler, J K White, C A Gutekunst, V Vrbanac, M Weaver, X J Li, S H Li, H Yi, J P Vonsattel, J F Gusella,[...]. Hum Mol Genet 2000
343
20

HDAC3 is a critical negative regulator of long-term memory formation.
Susan C McQuown, Ruth M Barrett, Dina P Matheos, Rebecca J Post, George A Rogge, Theresa Alenghat, Shannon E Mullican, Steven Jones, James R Rusche, Mitchell A Lazar,[...]. J Neurosci 2011
344
20

SAHA decreases HDAC 2 and 4 levels in vivo and improves molecular phenotypes in the R6/2 mouse model of Huntington's disease.
Michal Mielcarek, Caroline L Benn, Sophie A Franklin, Donna L Smith, Ben Woodman, Paul A Marks, Gillian P Bates. PLoS One 2011
114
20

Genetic knock-down of HDAC3 does not modify disease-related phenotypes in a mouse model of Huntington's disease.
Lara Moumné, Ken Campbell, David Howland, Yingbin Ouyang, Gillian P Bates. PLoS One 2012
43
20

Histone deacetylase 3 coordinates commensal-bacteria-dependent intestinal homeostasis.
Theresa Alenghat, Lisa C Osborne, Steven A Saenz, Dmytro Kobuley, Carly G K Ziegler, Shannon E Mullican, Inchan Choi, Stephanie Grunberg, Rohini Sinha, Meghan Wynosky-Dolfi,[...]. Nature 2013
127
20

The role of REST in transcriptional and epigenetic dysregulation in Huntington's disease.
Noel J Buckley, Rory Johnson, Chiara Zuccato, Angela Bithell, Elena Cattaneo. Neurobiol Dis 2010
97
20

Transcriptional consequences of 16p11.2 deletion and duplication in mouse cortex and multiplex autism families.
Ian Blumenthal, Ashok Ragavendran, Serkan Erdin, Lambertus Klei, Aarathi Sugathan, Jolene R Guide, Poornima Manavalan, Julian Q Zhou, Vanessa C Wheeler, Joshua Z Levin,[...]. Am J Hum Genet 2014
73
20

Aberrant splicing of HTT generates the pathogenic exon 1 protein in Huntington disease.
Kirupa Sathasivam, Andreas Neueder, Theresa A Gipson, Christian Landles, Agnesska C Benjamin, Marie K Bondulich, Donna L Smith, Richard L M Faull, Raymund A C Roos, David Howland,[...]. Proc Natl Acad Sci U S A 2013
278
20

DARPP-32 genomic fragments drive Cre expression in postnatal striatum.
Alexey I Bogush, Lois E McCarthy, Chai Tian, Vicki Olm, Tracy Gieringer, Sanja Ivkovic, Michelle E Ehrlich. Genesis 2005
24
20

Epigenetic Mechanisms Involved in Huntington's Disease Pathogenesis.
Kelly E Glajch, Ghazaleh Sadri-Vakili. J Huntingtons Dis 2015
23
20

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources.
Da Wei Huang, Brad T Sherman, Richard A Lempicki. Nat Protoc 2009
20

Histone deacetylase inhibitors: recent insights from basic to clinical knowledge & patenting of anti-cancer actions.
Vincenzo Carafa, Angela Nebbioso, Lucia Altucci. Recent Pat Anticancer Drug Discov 2011
26
20


LBH589, A Hydroxamic Acid-Derived HDAC Inhibitor, is Neuroprotective in Mouse Models of Huntington's Disease.
Vanita Chopra, Luisa Quinti, Prarthana Khanna, Paolo Paganetti, Rainer Kuhn, Anne B Young, Aleksey G Kazantsev, Steven Hersch. J Huntingtons Dis 2016
15
20

Histone deacetylase (HDAC) 1 and 2 complexes regulate both histone acetylation and crotonylation in vivo.
R D W Kelly, A Chandru, P J Watson, Y Song, M Blades, N S Robertson, A G Jamieson, J W R Schwabe, S M Cowley. Sci Rep 2018
41
20

Huntingtin is required for neurogenesis and is not impaired by the Huntington's disease CAG expansion.
J K White, W Auerbach, M P Duyao, J P Vonsattel, J F Gusella, A L Joyner, M E MacDonald. Nat Genet 1997
373
20

Post-translational modifications of lysine in DNA-damage repair.
Snehajyoti Chatterjee, Parijat Senapati, Tapas K Kundu. Essays Biochem 2012
14
20


A novel approach to investigate tissue-specific trinucleotide repeat instability.
Jong-Min Lee, Jie Zhang, Andrew I Su, John R Walker, Tim Wiltshire, Kihwa Kang, Ella Dragileva, Tammy Gillis, Edith T Lopez, Marie-Josee Boily,[...]. BMC Syst Biol 2010
75
20

CellProfiler: image analysis software for identifying and quantifying cell phenotypes.
Anne E Carpenter, Thouis R Jones, Michael R Lamprecht, Colin Clarke, In Han Kang, Ola Friman, David A Guertin, Joo Han Chang, Robert A Lindquist, Jason Moffat,[...]. Genome Biol 2006
20

Histone deacetylase activity is retained in primary neurons expressing mutant huntingtin protein.
Masataka Hoshino, Kazuhiko Tagawa, Tomohiro Okuda, Miho Murata, Kiyomitsu Oyanagi, Nobutaka Arai, Toshio Mizutani, Ichiro Kanazawa, Erich E Wanker, Hitoshi Okazawa. J Neurochem 2003
43
20

Early phenotypes that presage late-onset neurodegenerative disease allow testing of modifiers in Hdh CAG knock-in mice.
Vanessa C Wheeler, Claire-Anne Gutekunst, Vladimir Vrbanac, Lori-Anne Lebel, Gabriele Schilling, Steven Hersch, Robert M Friedlander, James F Gusella, Jean-Paul Vonsattel, David R Borchelt,[...]. Hum Mol Genet 2002
135
20

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
20

DNA Replication Origins and Fork Progression at Mammalian Telomeres.
Mitsunori Higa, Masatoshi Fujita, Kazumasa Yoshida. Genes (Basel) 2017
38
20

Relocation of Collapsed Forks to the Nuclear Pore Complex Depends on Sumoylation of DNA Repair Proteins and Permits Rad51 Association.
Jenna M Whalen, Nalini Dhingra, Lei Wei, Xiaolan Zhao, Catherine H Freudenreich. Cell Rep 2020
26
20

Warsaw Breakage Syndrome associated DDX11 helicase resolves G-quadruplex structures to support sister chromatid cohesion.
Janne J M van Schie, Atiq Faramarz, Jesper A Balk, Grant S Stewart, Erika Cantelli, Anneke B Oostra, Martin A Rooimans, Joanna L Parish, Cynthia de Almeida Estéves, Katja Dumic,[...]. Nat Commun 2020
18
20

R-loop formation during S phase is restricted by PrimPol-mediated repriming.
Saša Šviković, Alastair Crisp, Sue Mei Tan-Wong, Thomas A Guilliam, Aidan J Doherty, Nicholas J Proudfoot, Guillaume Guilbaud, Julian E Sale. EMBO J 2019
53
20

Relocalization of DNA lesions to the nuclear pore complex.
Catherine H Freudenreich, Xiaofeng A Su. FEMS Yeast Res 2016
30
20

DNA fragility in the parallel evolution of pelvic reduction in stickleback fish.
Kathleen T Xie, Guliang Wang, Abbey C Thompson, Julia I Wucherpfennig, Thomas E Reimchen, Andrew D C MacColl, Dolph Schluter, Michael A Bell, Karen M Vasquez, David M Kingsley. Science 2019
76
20

Dual Roles of Poly(dA:dT) Tracts in Replication Initiation and Fork Collapse.
Anthony Tubbs, Sriram Sridharan, Niek van Wietmarschen, Yaakov Maman, Elsa Callen, Andre Stanlie, Wei Wu, Xia Wu, Amanda Day, Nancy Wong,[...]. Cell 2018
91
20

Role of recombination and replication fork restart in repeat instability.
Erica J Polleys, Nealia C M House, Catherine H Freudenreich. DNA Repair (Amst) 2017
30
20

Precise Excision of the CAG Tract from the Huntingtin Gene by Cas9 Nickases.
Magdalena Dabrowska, Wojciech Juzwa, Wlodzimierz J Krzyzosiak, Marta Olejniczak. Front Neurosci 2018
54
20

Repeat expansions confer WRN dependence in microsatellite-unstable cancers.
Niek van Wietmarschen, Sriram Sridharan, William J Nathan, Anthony Tubbs, Edmond M Chan, Elsa Callen, Wei Wu, Frida Belinky, Veenu Tripathi, Nancy Wong,[...]. Nature 2020
33
20

How to maintain the genome in nuclear space.
Ioanna Mitrentsi, Duygu Yilmaz, Evi Soutoglou. Curr Opin Cell Biol 2020
15
20


Precarious maintenance of simple DNA repeats in eukaryotes.
Alexander J Neil, Jane C Kim, Sergei M Mirkin. Bioessays 2017
28
20

MutLγ promotes repeat expansion in a Fragile X mouse model while EXO1 is protective.
Xiaonan Zhao, Yongwei Zhang, Kenneth Wilkins, Winfried Edelmann, Karen Usdin. PLoS Genet 2018
27
20

Distinct roles for S. cerevisiae H2A copies in recombination and repeat stability, with a role for H2A.1 threonine 126.
Nealia Cm House, Erica J Polleys, Ishtiaque Quasem, Marjorie De la Rosa Mejia, Cailin E Joyce, Oliver Takacsi-Nagy, Jocelyn E Krebs, Stephen M Fuchs, Catherine H Freudenreich. Elife 2019
6
20

Temporal and Spatial Uncoupling of DNA Double Strand Break Repair Pathways within Mammalian Heterochromatin.
Katerina Tsouroula, Audrey Furst, Melanie Rogier, Vincent Heyer, Anne Maglott-Roth, Alexia Ferrand, Bernardo Reina-San-Martin, Evi Soutoglou. Mol Cell 2016
144
20

SWR1 and INO80 chromatin remodelers contribute to DNA double-strand break perinuclear anchorage site choice.
Chihiro Horigome, Yukako Oma, Tatsunori Konishi, Roger Schmid, Isabella Marcomini, Michael H Hauer, Vincent Dion, Masahiko Harata, Susan M Gasser. Mol Cell 2014
113
20

Nuclear envelope attachment of telomeres limits TERRA and telomeric rearrangements in quiescent fission yeast cells.
Laetitia Maestroni, Céline Reyes, Mélina Vaurs, Yannick Gachet, Sylvie Tournier, Vincent Géli, Stéphane Coulon. Nucleic Acids Res 2020
6
20

Mutational mechanism for DAB1 (ATTTC)n insertion in SCA37: ATTTT repeat lengthening and nucleotide substitution.
Joana R Loureiro, Cláudia L Oliveira, Carolina Mota, Ana F Castro, Cristina Costa, José L Loureiro, Paula Coutinho, Sandra Martins, Jorge Sequeiros, Isabel Silveira. Hum Mutat 2019
8
20

Mechanisms of genetic instability caused by (CGG)n repeats in an experimental mammalian system.
Artem V Kononenko, Thomas Ebersole, Karen M Vasquez, Sergei M Mirkin. Nat Struct Mol Biol 2018
22
20

The nuclear pore complex prevents sister chromatid recombination during replicative senescence.
Paula Aguilera, Jenna Whalen, Christopher Minguet, Dmitri Churikov, Catherine Freudenreich, Marie-Noëlle Simon, Vincent Géli. Nat Commun 2020
17
20

Telomerase Repairs Collapsed Replication Forks at Telomeres.
Samah Matmati, Sarah Lambert, Vincent Géli, Stéphane Coulon. Cell Rep 2020
14
20

Transcription destabilizes triplet repeats.
Yunfu Lin, Leroy Hubert, John H Wilson. Mol Carcinog 2009
64
20

EXO1 resection at G-quadruplex structures facilitates resolution and replication.
Susanna Stroik, Kevin Kurtz, Kevin Lin, Sergey Karachenets, Chad L Myers, Anja-Katrin Bielinsky, Eric A Hendrickson. Nucleic Acids Res 2020
16
20

Long-read sequencing identifies GGC repeat expansions in NOTCH2NLC associated with neuronal intranuclear inclusion disease.
Jun Sone, Satomi Mitsuhashi, Atsushi Fujita, Takeshi Mizuguchi, Kohei Hamanaka, Keiko Mori, Haruki Koike, Akihiro Hashiguchi, Hiroshi Takashima, Hiroshi Sugiyama,[...]. Nat Genet 2019
159
20


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.