A citation-based method for searching scientific literature

Kristen R Maynard, Leonardo Collado-Torres, Lukas M Weber, Cedric Uytingco, Brianna K Barry, Stephen R Williams, Joseph L Catallini, Matthew N Tran, Zachary Besich, Madhavi Tippani, Jennifer Chew, Yifeng Yin, Joel E Kleinman, Thomas M Hyde, Nikhil Rao, Stephanie C Hicks, Keri Martinowich, Andrew E Jaffe. Nat Neurosci 2021
Times Cited: 16







List of co-cited articles
114 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Microglia development follows a stepwise program to regulate brain homeostasis.
Orit Matcovitch-Natan, Deborah R Winter, Amir Giladi, Stephanie Vargas Aguilar, Amit Spinrad, Sandrine Sarrazin, Hila Ben-Yehuda, Eyal David, Fabiola Zelada González, Pierre Perrin,[...]. Science 2016
507
12

A Unique Microglia Type Associated with Restricting Development of Alzheimer's Disease.
Hadas Keren-Shaul, Amit Spinrad, Assaf Weiner, Orit Matcovitch-Natan, Raz Dvir-Szternfeld, Tyler K Ulland, Eyal David, Kuti Baruch, David Lara-Astaiso, Beata Toth,[...]. Cell 2017
12


Developmental excitation-inhibition imbalance underlying psychoses revealed by single-cell analyses of discordant twins-derived cerebral organoids.
Tomoyo Sawada, Thomas E Chater, Yohei Sasagawa, Mika Yoshimura, Noriko Fujimori-Tonou, Kaori Tanaka, Kynon J M Benjamin, Apuã C M Paquola, Jennifer A Erwin, Yukiko Goda,[...]. Mol Psychiatry 2020
12
16

Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism.
F Kyle Satterstrom, Jack A Kosmicki, Jiebiao Wang, Michael S Breen, Silvia De Rubeis, Joon-Yong An, Minshi Peng, Ryan Collins, Jakob Grove, Lambertus Klei,[...]. Cell 2020
369
12

CNV biology in neurodevelopmental disorders.
Toru Takumi, Kota Tamada. Curr Opin Neurobiol 2018
44
12

Integrative single-cell analysis of transcriptional and epigenetic states in the human adult brain.
Blue B Lake, Song Chen, Brandon C Sos, Jean Fan, Gwendolyn E Kaeser, Yun C Yung, Thu E Duong, Derek Gao, Jerold Chun, Peter V Kharchenko,[...]. Nat Biotechnol 2018
279
12

Conserved cell types with divergent features in human versus mouse cortex.
Rebecca D Hodge, Trygve E Bakken, Jeremy A Miller, Kimberly A Smith, Eliza R Barkan, Lucas T Graybuck, Jennie L Close, Brian Long, Nelson Johansen, Osnat Penn,[...]. Nature 2019
339
12

Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.
Iris E Jansen, Jeanne E Savage, Kyoko Watanabe, Julien Bryois, Dylan M Williams, Stacy Steinberg, Julia Sealock, Ida K Karlsson, Sara Hägg, Lavinia Athanasiu,[...]. Nat Genet 2019
521
12

Synaptic, transcriptional and chromatin genes disrupted in autism.
Silvia De Rubeis, Xin He, Arthur P Goldberg, Christopher S Poultney, Kaitlin Samocha, A Erucment Cicek, Yan Kou, Li Liu, Menachem Fromer, Susan Walker,[...]. Nature 2014
12

A survey of human brain transcriptome diversity at the single cell level.
Spyros Darmanis, Steven A Sloan, Ye Zhang, Martin Enge, Christine Caneda, Lawrence M Shuer, Melanie G Hayden Gephart, Ben A Barres, Stephen R Quake. Proc Natl Acad Sci U S A 2015
549
12

Brain cell type-specific enhancer-promoter interactome maps and disease-risk association.
Alexi Nott, Inge R Holtman, Nicole G Coufal, Johannes C M Schlachetzki, Miao Yu, Rong Hu, Claudia Z Han, Monique Pena, Jiayang Xiao, Yin Wu,[...]. Science 2019
136
12

Profiling gene expression in the human dentate gyrus granule cell layer reveals insights into schizophrenia and its genetic risk.
Andrew E Jaffe, Daniel J Hoeppner, Takeshi Saito, Lou Blanpain, Joy Ukaigwe, Emily E Burke, Leonardo Collado-Torres, Ran Tao, Katsunori Tajinda, Kristen R Maynard,[...]. Nat Neurosci 2020
22
12

Molecular characterization of selectively vulnerable neurons in Alzheimer's disease.
Kun Leng, Emmy Li, Rana Eser, Antonia Piergies, Rene Sit, Michelle Tan, Norma Neff, Song Hua Li, Roberta Diehl Rodriguez, Claudia Kimie Suemoto,[...]. Nat Neurosci 2021
30
12

Single-cell RNA counting at allele and isoform resolution using Smart-seq3.
Michael Hagemann-Jensen, Christoph Ziegenhain, Ping Chen, Daniel Ramsköld, Gert-Jan Hendriks, Anton J M Larsson, Omid R Faridani, Rickard Sandberg. Nat Biotechnol 2020
70
6

Spatial transcriptomics: putting genome-wide expression on the map.
K R Maynard, A E Jaffe, K Martinowich. Neuropsychopharmacology 2020
9
11

Altered gene expression in the dorsolateral prefrontal cortex of individuals with schizophrenia.
A L Guillozet-Bongaarts, T M Hyde, R A Dalley, M J Hawrylycz, A Henry, P R Hof, J Hohmann, A R Jones, C L Kuan, J Royall,[...]. Mol Psychiatry 2014
63
6

eSNPO: An eQTL-based SNP Ontology and SNP functional enrichment analysis platform.
Jin Li, Limei Wang, Tao Jiang, Jizhe Wang, Xue Li, Xiaoyan Liu, Chunyu Wang, Zhixia Teng, Ruijie Zhang, Hongchao Lv,[...]. Sci Rep 2016
7
14

Purification and Characterization of Progenitor and Mature Human Astrocytes Reveals Transcriptional and Functional Differences with Mouse.
Ye Zhang, Steven A Sloan, Laura E Clarke, Christine Caneda, Colton A Plaza, Paul D Blumenthal, Hannes Vogel, Gary K Steinberg, Michael S B Edwards, Gordon Li,[...]. Neuron 2016
825
6

Systematic Integration of Brain eQTL and GWAS Identifies ZNF323 as a Novel Schizophrenia Risk Gene and Suggests Recent Positive Selection Based on Compensatory Advantage on Pulmonary Function.
Xiong-Jian Luo, Manuel Mattheisen, Ming Li, Liang Huang, Marcella Rietschel, Anders D Børglum, Thomas D Als, Edwin J van den Oord, Karolina A Aberg, Ole Mors,[...]. Schizophr Bull 2015
34
6

Genetics of global gene expression.
Matthew V Rockman, Leonid Kruglyak. Nat Rev Genet 2006
397
6


Effect of VNTR Polymorphism of the AS3MT Gene and Obstetrical Complications on the Severity of Schizophrenia.
G I Korovaitseva, M V Gabaeva, O A Yunilainen, V E Golimbet. Bull Exp Biol Med 2019
2
50

Single-Cell Quantification of mRNA Expression in The Human Brain.
Sarah Jolly, Verena Lang, Viktor Hendrik Koelzer, Carlo Sala Frigerio, Lorenza Magno, Patricia C Salinas, Paul Whiting, Ernest Palomer. Sci Rep 2019
9
11

Increased burden of ultra-rare protein-altering variants among 4,877 individuals with schizophrenia.
Giulio Genovese, Menachem Fromer, Eli A Stahl, Douglas M Ruderfer, Kimberly Chambert, Mikael Landén, Jennifer L Moran, Shaun M Purcell, Pamela Sklar, Patrick F Sullivan,[...]. Nat Neurosci 2016
217
6

A human-specific AS3MT isoform and BORCS7 are molecular risk factors in the 10q24.32 schizophrenia-associated locus.
Ming Li, Andrew E Jaffe, Richard E Straub, Ran Tao, Joo Heon Shin, Yanhong Wang, Qiang Chen, Chao Li, Yankai Jia, Kazutaka Ohi,[...]. Nat Med 2016
89
6

Schizophrenia risk variants influence multiple classes of transcripts of sorting nexin 19 (SNX19).
Liang Ma, Stephen A Semick, Qiang Chen, Chao Li, Ran Tao, Amanda J Price, Joo Heon Shin, Yankai Jia, Nicholas J Brandon, Alan J Cross,[...]. Mol Psychiatry 2020
18
6

GAD1 alternative transcripts and DNA methylation in human prefrontal cortex and hippocampus in brain development, schizophrenia.
R Tao, K N Davis, C Li, J H Shin, Y Gao, A E Jaffe, M C Gondré-Lewis, D R Weinberger, J E Kleinman, T M Hyde. Mol Psychiatry 2018
24
6

Mapping Synaptic Pathology within Cerebral Cortical Circuits in Subjects with Schizophrenia.
Robert A Sweet, Kenneth N Fish, David A Lewis. Front Hum Neurosci 2010
23
6

Genetic Control of Expression and Splicing in Developing Human Brain Informs Disease Mechanisms.
Rebecca L Walker, Gokul Ramaswami, Christopher Hartl, Nicholas Mancuso, Michael J Gandal, Luis de la Torre-Ubieta, Bogdan Pasaniuc, Jason L Stein, Daniel H Geschwind. Cell 2019
44
6

The effect of a genetic variant at the schizophrenia associated AS3MT/BORCS7 locus on striatal dopamine function: A PET imaging study.
Enrico D'Ambrosio, Tarik Dahoun, Antonio F Pardiñas, Mattia Veronese, Michael A P Bloomfield, Sameer Jauhar, Ilaria Bonoldi, Maria Rogdaki, Sean Froudist-Walsh, James T R Walters,[...]. Psychiatry Res Neuroimaging 2019
6
16

A Novel Ultrasensitive In Situ Hybridization Approach to Detect Short Sequences and Splice Variants with Cellular Resolution.
Larissa Erben, Ming-Xiao He, Annelies Laeremans, Emily Park, Andres Buonanno. Mol Neurobiol 2018
28
6




RNAscope: a novel in situ RNA analysis platform for formalin-fixed, paraffin-embedded tissues.
Fay Wang, John Flanagan, Nan Su, Li-Chong Wang, Son Bui, Allissa Nielson, Xingyong Wu, Hong-Thuy Vo, Xiao-Jun Ma, Yuling Luo. J Mol Diagn 2012
6

Transcriptome alterations of prefrontal cortical parvalbumin neurons in schizophrenia.
J F Enwright Iii, Z Huo, D Arion, J P Corradi, G Tseng, D A Lewis. Mol Psychiatry 2018
40
6

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
6

Spatial transcriptomics coming of age.
Darren J Burgess. Nat Rev Genet 2019
57
6


Regulation of in situ to invasive breast carcinoma transition.
Min Hu, Jun Yao, Danielle K Carroll, Stanislawa Weremowicz, Haiyan Chen, Daniel Carrasco, Andrea Richardson, Shelia Violette, Tatiana Nikolskaya, Yuri Nikolsky,[...]. Cancer Cell 2008
356
6

ZNF703 is a common Luminal B breast cancer oncogene that differentially regulates luminal and basal progenitors in human mammary epithelium.
Daniel G Holland, Angela Burleigh, Anna Git, Mae A Goldgraben, Pedro A Perez-Mancera, Suet-Feung Chin, Antonio Hurtado, Alejandra Bruna, H Raza Ali, Wendy Greenwood,[...]. EMBO Mol Med 2011
95
6

A single-cell landscape of high-grade serous ovarian cancer.
Benjamin Izar, Itay Tirosh, Elizabeth H Stover, Isaac Wakiro, Michael S Cuoco, Idan Alter, Christopher Rodman, Rachel Leeson, Mei-Ju Su, Parin Shah,[...]. Nat Med 2020
57
6

Pancreatic ductal adenocarcinoma mice lacking mucin 1 have a profound defect in tumor growth and metastasis.
Dahlia M Besmer, Jennifer M Curry, Lopamudra D Roy, Teresa L Tinder, Mahnaz Sahraei, Jorge Schettini, Sun-Il Hwang, Yong Y Lee, Sandra J Gendler, Pinku Mukherjee. Cancer Res 2011
79
6

Overexpression of the Grb2 gene in human breast cancer cell lines.
R J Daly, M D Binder, R L Sutherland. Oncogene 1994
80
6

Probabilistic segmentation and intensity estimation for microarray images.
Raphael Gottardo, Julian Besag, Matthew Stephens, Alejandro Murua. Biostatistics 2006
10
10

ZipSeq: barcoding for real-time mapping of single cell transcriptomes.
Kenneth H Hu, John P Eichorst, Chris S McGinnis, David M Patterson, Eric D Chow, Kelly Kersten, Stephen C Jameson, Zev J Gartner, Arjun A Rao, Matthew F Krummel. Nat Methods 2020
17
6

SC3: consensus clustering of single-cell RNA-seq data.
Vladimir Yu Kiselev, Kristina Kirschner, Michael T Schaub, Tallulah Andrews, Andrew Yiu, Tamir Chandra, Kedar N Natarajan, Wolf Reik, Mauricio Barahona, Anthony R Green,[...]. Nat Methods 2017
462
6

Silencing of TGF-beta signalling by the pseudoreceptor BAMBI.
D Onichtchouk, Y G Chen, R Dosch, V Gawantka, H Delius, J Massagué, C Niehrs. Nature 1999
519
6

SPOTlight: seeded NMF regression to deconvolute spatial transcriptomics spots with single-cell transcriptomes.
Marc Elosua-Bayes, Paula Nieto, Elisabetta Mereu, Ivo Gut, Holger Heyn. Nucleic Acids Res 2021
21
6


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.