A citation-based method for searching scientific literature

Arum Kim, Gang Greg Wang. Biochim Biophys Acta Gene Regul Mech 2021
Times Cited: 2







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Paired-end analysis of transcription start sites in Arabidopsis reveals plant-specific promoter signatures.
Taj Morton, Jalean Petricka, David L Corcoran, Song Li, Cara M Winter, Alexa Carda, Philip N Benfey, Uwe Ohler, Molly Megraw. Plant Cell 2014
74
50

mRNA adenosine methylase (MTA) deposits m6A on pri-miRNAs to modulate miRNA biogenesis in Arabidopsis thaliana.
Susheel Sagar Bhat, Dawid Bielewicz, Tomasz Gulanicz, Zsuzsanna Bodi, Xiang Yu, Stephen J Anderson, Lukasz Szewc, Mateusz Bajczyk, Jakub Dolata, Natalia Grzelak,[...]. Proc Natl Acad Sci U S A 2020
30
50

Transcription-driven chromatin repression of Intragenic transcription start sites.
Mathias Nielsen, Ryan Ard, Xueyuan Leng, Maxim Ivanov, Peter Kindgren, Vicent Pelechano, Sebastian Marquardt. PLoS Genet 2019
36
50

Linking transcription, RNA polymerase II elongation and alternative splicing.
Luciana E Giono, Alberto R Kornblihtt. Biochem J 2020
9
50

Arabidopsis primary microRNA processing proteins HYL1 and DCL1 define a nuclear body distinct from the Cajal body.
Liang Song, Meng-Hsuan Han, Joanna Lesicka, Nina Fedoroff. Proc Natl Acad Sci U S A 2007
176
50

DNA Topoisomerase 1 Prevents R-loop Accumulation to Modulate Auxin-Regulated Root Development in Rice.
Sarfraz Shafiq, Chunli Chen, Jing Yang, Lingling Cheng, Fei Ma, Emilie Widemann, Qianwen Sun. Mol Plant 2017
27
50


Sex-biased lethality or transmission of defective transcription machinery in Arabidopsis.
Yasuyuki Onodera, Kosuke Nakagawa, Jeremy R Haag, Diane Pikaard, Tetsuo Mikami, Thomas Ream, Yusuke Ito, Craig S Pikaard. Genetics 2008
34
50


Two cap-binding proteins CBP20 and CBP80 are involved in processing primary MicroRNAs.
Sanghee Kim, Jun-Yi Yang, Jun Xu, In-Cheol Jang, Michael J Prigge, Nam-Hai Chua. Plant Cell Physiol 2008
118
50

deepTools2: a next generation web server for deep-sequencing data analysis.
Fidel Ramírez, Devon P Ryan, Björn Grüning, Vivek Bhardwaj, Fabian Kilpert, Andreas S Richter, Steffen Heyne, Friederike Dündar, Thomas Manke. Nucleic Acids Res 2016
50

SWI2/SNF2 ATPase CHR2 remodels pri-miRNAs via Serrate to impede miRNA production.
Zhiye Wang, Zeyang Ma, Claudia Castillo-González, Di Sun, Yanjun Li, Bin Yu, Baoyu Zhao, Pingwei Li, Xiuren Zhang. Nature 2018
63
50

The R-Loop Atlas of Arabidopsis Development and Responses to Environmental Stimuli.
Wei Xu, Kuan Li, Shuai Li, Quancan Hou, Yushun Zhang, Kunpeng Liu, Qianwen Sun. Plant Cell 2020
28
50

R-Loop Mediated trans Action of the APOLO Long Noncoding RNA.
Federico Ariel, Leandro Lucero, Aurelie Christ, Maria Florencia Mammarella, Teddy Jegu, Alaguraj Veluchamy, Kiruthiga Mariappan, David Latrasse, Thomas Blein, Chang Liu,[...]. Mol Cell 2020
78
50

Arabidopsis ARGONAUTE 1 Binds Chromatin to Promote Gene Transcription in Response to Hormones and Stresses.
Chang Liu, Ying Xin, Le Xu, Zhaokui Cai, Yuanchao Xue, Yong Liu, Daoxin Xie, Yule Liu, Yijun Qi. Dev Cell 2018
76
50

Evolution and functional diversification of MIRNA genes.
Josh T Cuperus, Noah Fahlgren, James C Carrington. Plant Cell 2011
453
50

Genome-scale, single-cell-type resolution of microRNA activities within a whole plant organ.
Christopher Andrew Brosnan, Alexis Sarazin, PeiQi Lim, Nicolas Gerardo Bologna, Matthias Hirsch-Hoffmann, Olivier Voinnet. EMBO J 2019
20
50

Antagonistic cotranscriptional regulation through ARGONAUTE1 and the THO/TREX complex orchestrates FLC transcriptional output.
Congyao Xu, Xiaofeng Fang, Tiancong Lu, Caroline Dean. Proc Natl Acad Sci U S A 2021
2
50

Efficiency and precision of microRNA biogenesis modes in plants.
Belén Moro, Uciel Chorostecki, Siwaret Arikit, Irina P Suarez, Claudia Höbartner, Rodolfo M Rasia, Blake C Meyers, Javier F Palatnik. Nucleic Acids Res 2018
30
50

Mammalian NET-Seq Reveals Genome-wide Nascent Transcription Coupled to RNA Processing.
Takayuki Nojima, Tomás Gomes, Ana Rita Fialho Grosso, Hiroshi Kimura, Michael J Dye, Somdutta Dhir, Maria Carmo-Fonseca, Nicholas J Proudfoot. Cell 2015
304
50



R-loop resolution promotes co-transcriptional chromatin silencing.
Congyao Xu, Zhe Wu, Hong-Chao Duan, Xiaofeng Fang, Guifang Jia, Caroline Dean. Nat Commun 2021
17
50

RNA fate determination through cotranscriptional adenosine methylation and microprocessor binding.
Philip Knuckles, Sarah H Carl, Michael Musheev, Christof Niehrs, Alice Wenger, Marc Bühler. Nat Struct Mol Biol 2017
88
50

Comparison of miRNA Evolution and Function in Plants and Animals.
Yu Zhang, Ze Yun, Liang Gong, Hongxia Qu, Xuewu Duan, Yueming Jiang, Hong Zhu. Microrna 2018
27
50

Transcriptional activity of Hyacinthus orientalis L. female gametophyte cells before and after fertilization.
Katarzyna Niedojadło, Szymon Pięciński, Dariusz Jan Smoliński, Elżbieta Bednarska-Kozakiewicz. Planta 2012
6
50

R-Loops as Promoters of Antisense Transcription.
Ana G Rondón, Andrés Aguilera. Mol Cell 2019
3
50

Metazoan MicroRNAs.
David P Bartel. Cell 2018
50

Vive la différence: biogenesis and evolution of microRNAs in plants and animals.
Michael J Axtell, Jakub O Westholm, Eric C Lai. Genome Biol 2011
278
50

Active 5' splice sites regulate the biogenesis efficiency of Arabidopsis microRNAs derived from intron-containing genes.
Katarzyna Knop, Agata Stepien, Maria Barciszewska-Pacak, Michal Taube, Dawid Bielewicz, Michal Michalak, Jan W Borst, Artur Jarmolowski, Zofia Szweykowska-Kulinska. Nucleic Acids Res 2017
25
50

A systemic identification approach for primary transcription start site of Arabidopsis miRNAs from multidimensional omics data.
Qi You, Hengyu Yan, Yue Liu, Xin Yi, Kang Zhang, Wenying Xu, Zhen Su. Funct Integr Genomics 2017
3
50

THO2, a core member of the THO/TREX complex, is required for microRNA production in Arabidopsis.
Anchilie G Francisco-Mangilet, Patricia Karlsson, Myung-Hee Kim, Hyeon Ju Eo, Sung Aeong Oh, Jeong Hoe Kim, Franceli Rodrigues Kulcheski, Soon Ki Park, Pablo Andrés Manavella. Plant J 2015
45
50


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.