A citation-based method for searching scientific literature

Xihao Li, Godwin Yung, Hufeng Zhou, Ryan Sun, Zilin Li, Kangcheng Hou, Martin Jinye Zhang, Yaowu Liu, Theodore Arapoglou, Chen Wang, Iuliana Ionita-Laza, Xihong Lin. Am J Hum Genet 2022
Times Cited: 3







List of co-cited articles
17 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Trans-ancestry Fine Mapping and Molecular Assays Identify Regulatory Variants at the ANGPTL8 HDL-C GWAS Locus.
Maren E Cannon, Qing Duan, Ying Wu, Monica Zeynalzadeh, Zheng Xu, Antti J Kangas, Pasi Soininen, Mika Ala-Korpela, Mete Civelek, Aldons J Lusis,[...]. G3 (Bethesda) 2017
15
33

Genome-wide association study identifies novel susceptibility loci for cutaneous squamous cell carcinoma.
Harvind S Chahal, Yuan Lin, Katherine J Ransohoff, David A Hinds, Wenting Wu, Hong-Ji Dai, Abrar A Qureshi, Wen-Qing Li, Peter Kraft, Jean Y Tang,[...]. Nat Commun 2016
90
33

Cell-type-specific eQTL of primary melanocytes facilitates identification of melanoma susceptibility genes.
Tongwu Zhang, Jiyeon Choi, Michael A Kovacs, Jianxin Shi, Mai Xu, Alisa M Goldstein, Adam J Trower, D Timothy Bishop, Mark M Iles, David L Duffy,[...]. Genome Res 2018
44
33

Familial risk for lung cancer.
Madiha Kanwal, Xiao-Ji Ding, Yi Cao. Oncol Lett 2017
44
33

Identification of susceptibility pathways for the role of chromosome 15q25.1 in modifying lung cancer risk.
Xuemei Ji, Yohan Bossé, Maria Teresa Landi, Jiang Gui, Xiangjun Xiao, David Qian, Philippe Joubert, Maxime Lamontagne, Yafang Li, Ivan Gorlov,[...]. Nat Commun 2018
39
33

Integrative analysis of 111 reference human epigenomes.
Anshul Kundaje, Wouter Meuleman, Jason Ernst, Misha Bilenky, Angela Yen, Alireza Heravi-Moussavi, Pouya Kheradpour, Zhizhuo Zhang, Jianrong Wang, Michael J Ziller,[...]. Nature 2015
33

Open Targets Genetics: systematic identification of trait-associated genes using large-scale genetics and functional genomics.
Maya Ghoussaini, Edward Mountjoy, Miguel Carmona, Gareth Peat, Ellen M Schmidt, Andrew Hercules, Luca Fumis, Alfredo Miranda, Denise Carvalho-Silva, Annalisa Buniello,[...]. Nucleic Acids Res 2021
99
33

ClinVar: improvements to accessing data.
Melissa J Landrum, Shanmuga Chitipiralla, Garth R Brown, Chao Chen, Baoshan Gu, Jennifer Hart, Douglas Hoffman, Wonhee Jang, Kuljeet Kaur, Chunlei Liu,[...]. Nucleic Acids Res 2020
228
33

Potential etiologic and functional implications of genome-wide association loci for human diseases and traits.
Lucia A Hindorff, Praveen Sethupathy, Heather A Junkins, Erin M Ramos, Jayashri P Mehta, Francis S Collins, Teri A Manolio. Proc Natl Acad Sci U S A 2009
33

Whole-genome sequencing reveals that variants in the Interleukin 18 Receptor Accessory Protein 3'UTR protect against ALS.
Chen Eitan, Aviad Siany, Elad Barkan, Tsviya Olender, Kristel R van Eijk, Matthieu Moisse, Sali M K Farhan, Yehuda M Danino, Eran Yanowski, Hagai Marmor-Kollet,[...]. Nat Neurosci 2022
5
33

Openness Weighted Association Studies: Leveraging Personal Genome Information to Prioritize Noncoding Variants.
Shuang Song, Nayang Shan, Geng Wang, Xiting Yan, Jun S Liu, Lin Hou. Bioinformatics 2021
2
50

CADD-Splice-improving genome-wide variant effect prediction using deep learning-derived splice scores.
Philipp Rentzsch, Max Schubach, Jay Shendure, Martin Kircher. Genome Med 2021
128
33

ICGC-ARGO precision medicine: familial matters in pancreatic cancer.
Michele Milella, Claudio Luchini, Rita T Lawlor, Amber L Johns, Raffaella Casolino, Takayuki Yoshino, Andrew V Biankin. Lancet Oncol 2022
3
33


dbSNP: the NCBI database of genetic variation.
S T Sherry, M H Ward, M Kholodov, J Baker, L Phan, E M Smigielski, K Sirotkin. Nucleic Acids Res 2001
33


The "All of Us" Research Program.
Jeff Murray. N Engl J Med 2019
11
33

StrVCTVRE: A supervised learning method to predict the pathogenicity of human genome structural variants.
Andrew G Sharo, Zhiqiang Hu, Shamil R Sunyaev, Steven E Brenner. Am J Hum Genet 2022
10
33

The support of human genetic evidence for approved drug indications.
Matthew R Nelson, Hannah Tipney, Jeffery L Painter, Judong Shen, Paola Nicoletti, Yufeng Shen, Aris Floratos, Pak Chung Sham, Mulin Jun Li, Junwen Wang,[...]. Nat Genet 2015
673
33

The Alzheimer's Disease Sequencing Project: Study design and sample selection.
Gary W Beecham, J C Bis, E R Martin, S-H Choi, A L DeStefano, C M van Duijn, M Fornage, S B Gabriel, D C Koboldt, D E Larson,[...]. Neurol Genet 2017
75
33

RegulationSpotter: annotation and interpretation of extratranscriptic DNA variants.
Jana Marie Schwarz, Daniela Hombach, Sebastian Köhler, David N Cooper, Markus Schuelke, Dominik Seelow. Nucleic Acids Res 2019
10
33

DeepWAS: Multivariate genotype-phenotype associations by directly integrating regulatory information using deep learning.
Janine Arloth, Gökcen Eraslan, Till F M Andlauer, Jade Martins, Stella Iurato, Brigitte Kühnel, Melanie Waldenberger, Josef Frank, Ralf Gold, Bernhard Hemmer,[...]. PLoS Comput Biol 2020
22
33

INFERNO: inferring the molecular mechanisms of noncoding genetic variants.
Alexandre Amlie-Wolf, Mitchell Tang, Elisabeth E Mlynarski, Pavel P Kuksa, Otto Valladares, Zivadin Katanic, Debby Tsuang, Christopher D Brown, Gerard D Schellenberg, Li-San Wang. Nucleic Acids Res 2018
34
33

SVFX: a machine learning framework to quantify the pathogenicity of structural variants.
Sushant Kumar, Arif Harmanci, Jagath Vytheeswaran, Mark B Gerstein. Genome Biol 2020
13
33

Functional annotation of genomic variants in studies of late-onset Alzheimer's disease.
Mariusz Butkiewicz, Elizabeth E Blue, Yuk Yee Leung, Xueqiu Jian, Edoardo Marcora, Alan E Renton, Amanda Kuzma, Li-San Wang, Daniel C Koboldt, Jonathan L Haines,[...]. Bioinformatics 2018
15
33

The ensembl regulatory build.
Daniel R Zerbino, Steven P Wilder, Nathan Johnson, Thomas Juettemann, Paul R Flicek. Genome Biol 2015
238
33

VariCarta: A Comprehensive Database of Harmonized Genomic Variants Found in Autism Spectrum Disorder Sequencing Studies.
Manuel Belmadani, Matthew Jacobson, Nathan Holmes, Minh Phan, Tue Nguyen, Paul Pavlidis, Sanja Rogic. Autism Res 2019
15
33

Successful application of genome sequencing in a diagnostic setting: 1007 index cases from a clinically heterogeneous cohort.
Aida M Bertoli-Avella, Christian Beetz, Najim Ameziane, Maria Eugenia Rocha, Pilar Guatibonza, Catarina Pereira, Maria Calvo, Natalia Herrera-Ordonez, Monica Segura-Castel, Dan Diego-Alvarez,[...]. Eur J Hum Genet 2021
28
33

Priority index: database of genetic targets in immune-mediated disease.
Hai Fang, Julian C Knight. Nucleic Acids Res 2022
7
33

Dynamic Scan Procedure for Detecting Rare-Variant Association Regions in Whole-Genome Sequencing Studies.
Zilin Li, Xihao Li, Yaowu Liu, Jincheng Shen, Han Chen, Hufeng Zhou, Alanna C Morrison, Eric Boerwinkle, Xihong Lin. Am J Hum Genet 2019
18
33


Using INFERNO to Infer the Molecular Mechanisms Underlying Noncoding Genetic Associations.
Alexandre Amlie-Wolf, Pavel P Kuksa, Chien-Yueh Lee, Elisabeth Mlynarski, Yuk Yee Leung, Li-San Wang. Methods Mol Biol 2021
1
100

Regulatory genomic circuitry of human disease loci by integrative epigenomics.
Carles A Boix, Benjamin T James, Yongjin P Park, Wouter Meuleman, Manolis Kellis. Nature 2021
71
33

New insights into the genetic etiology of Alzheimer's disease and related dementias.
Céline Bellenguez, Fahri Küçükali, Iris E Jansen, Luca Kleineidam, Sonia Moreno-Grau, Najaf Amin, Adam C Naj, Rafael Campos-Martin, Benjamin Grenier-Boley, Victor Andrade,[...]. Nat Genet 2022
120
33

Genome Nexus: A Comprehensive Resource for the Annotation and Interpretation of Genomic Variants in Cancer.
Ino de Bruijn, Xiang Li, Selcuk Onur Sumer, Benjamin Gross, Robert Sheridan, Angelica Ochoa, Manda Wilson, Avery Wang, Hongxin Zhang, Aaron Lisman,[...]. JCO Clin Cancer Inform 2022
1
100


Prioritizing non-coding regions based on human genomic constraint and sequence context with deep learning.
Dimitrios Vitsios, Ryan S Dhindsa, Lawrence Middleton, Ayal B Gussow, Slavé Petrovski. Nat Commun 2021
12
33

Alzheimer's Disease Variant Portal: A Catalog of Genetic Findings for Alzheimer's Disease.
Pavel P Kuksa, Chia-Lun Liu, Wei Fu, Liming Qu, Yi Zhao, Zivadin Katanic, Kaylyn Clark, Amanda B Kuzma, Pei-Chuan Ho, Kai-Teh Tzeng,[...]. J Alzheimers Dis 2022
1
100




A genetics-led approach defines the drug target landscape of 30 immune-related traits.
Hai Fang, Hans De Wolf, Bogdan Knezevic, Katie L Burnham, Julie Osgood, Anna Sanniti, Alicia Lledó Lara, Silva Kasela, Stephane De Cesco, Jörg K Wegner,[...]. Nat Genet 2019
94
33

Genetic effects on gene expression across human tissues.
Alexis Battle, Christopher D Brown, Barbara E Engelhardt, Stephen B Montgomery. Nature 2017
33

X-CNV: genome-wide prediction of the pathogenicity of copy number variations.
Li Zhang, Jingru Shi, Jian Ouyang, Riquan Zhang, Yiran Tao, Dongsheng Yuan, Chengkai Lv, Ruiyuan Wang, Baitang Ning, Ruth Roberts,[...]. Genome Med 2021
10
33

Structural variation in the sequencing era.
Steve S Ho, Alexander E Urban, Ryan E Mills. Nat Rev Genet 2020
169
33

RefSeq Functional Elements as experimentally assayed nongenic reference standards and functional interactions in human and mouse.
Catherine M Farrell, Tamara Goldfarb, Sanjida H Rangwala, Alexander Astashyn, Olga D Ermolaeva, Vichet Hem, Kenneth S Katz, Vamsi K Kodali, Frank Ludwig, Craig L Wallin,[...]. Genome Res 2022
3
33

Probabilistic colocalization of genetic variants from complex and molecular traits: promise and limitations.
Abhay Hukku, Milton Pividori, Francesca Luca, Roger Pique-Regi, Hae Kyung Im, Xiaoquan Wen. Am J Hum Genet 2021
22
33

LincSNP 3.0: an updated database for linking functional variants to human long non-coding RNAs, circular RNAs and their regulatory elements.
Yue Gao, Xin Li, Shipeng Shang, Shuang Guo, Peng Wang, Dailin Sun, Jing Gan, Jie Sun, Yakun Zhang, Junwei Wang,[...]. Nucleic Acids Res 2021
20
33

Genome-wide mapping of in vivo protein-DNA interactions.
David S Johnson, Ali Mortazavi, Richard M Myers, Barbara Wold. Science 2007
33

GIGGLE: a search engine for large-scale integrated genome analysis.
Ryan M Layer, Brent S Pedersen, Tonya DiSera, Gabor T Marth, Jason Gertz, Aaron R Quinlan. Nat Methods 2018
68
33


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.