A citation-based method for searching scientific literature


List of co-cited articles
1224 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Global regulation of H2A.Z localization by the INO80 chromatin-remodeling enzyme is essential for genome integrity.
Manolis Papamichos-Chronakis, Shinya Watanabe, Oliver J Rando, Craig L Peterson. Cell 2011
261
7

Manipulating nucleosome disfavoring sequences allows fine-tune regulation of gene expression in yeast.
Tali Raveh-Sadka, Michal Levo, Uri Shabi, Boaz Shany, Leeat Keren, Maya Lotan-Pompan, Danny Zeevi, Eilon Sharon, Adina Weinberger, Eran Segal. Nat Genet 2012
129
7


Histone H4-K16 acetylation controls chromatin structure and protein interactions.
Michael Shogren-Knaak, Haruhiko Ishii, Jian-Min Sun, Michael J Pazin, James R Davie, Craig L Peterson. Science 2006
7

Single-molecule force spectroscopy reveals a highly compliant helical folding for the 30-nm chromatin fiber.
Maarten Kruithof, Fan-Tso Chien, Andrew Routh, Colin Logie, Daniela Rhodes, John van Noort. Nat Struct Mol Biol 2009
170
7

Dynamic regulation of transcription factors by nucleosome remodeling.
Ming Li, Arjan Hada, Payel Sen, Lola Olufemi, Michael A Hall, Benjamin Y Smith, Scott Forth, Jeffrey N McKnight, Ashok Patel, Gregory D Bowman,[...]. Elife 2015
57
12


Chromatin dynamics: nucleosomes go mobile through twist defects.
I M Kulić, H Schiessel. Phys Rev Lett 2003
56
12

Polymer reptation and nucleosome repositioning.
H Schiessel, J Widom, R F Bruinsma, W M Gelbart. Phys Rev Lett 2001
80
8

Mobile nucleosomes--a general behavior.
G Meersseman, S Pennings, E M Bradbury. EMBO J 1992
242
7

Histone- and DNA sequence-dependent stability of nucleosomes studied by single-pair FRET.
Katalin Tóth, Vera Böhm, Carolin Sellmann, Maria Danner, Janina Hanne, Marina Berg, Ina Barz, Alexander Gansen, Jörg Langowski. Cytometry A 2013
29
24

Mapping Nucleosome Resolution Chromosome Folding in Yeast by Micro-C.
Tsung-Han S Hsieh, Assaf Weiner, Bryan Lajoie, Job Dekker, Nir Friedman, Oliver J Rando. Cell 2015
278
7

The accessible chromatin landscape of the human genome.
Robert E Thurman, Eric Rynes, Richard Humbert, Jeff Vierstra, Matthew T Maurano, Eric Haugen, Nathan C Sheffield, Andrew B Stergachis, Hao Wang, Benjamin Vernot,[...]. Nature 2012
7

Sequence periodicities in chicken nucleosome core DNA.
S C Satchwell, H R Drew, A A Travers. J Mol Biol 1986
766
7

ATP-dependent chromatin remodeling is required for base excision repair in conventional but not in variant H2A.Bbd nucleosomes.
Hervé Menoni, Didier Gasparutto, Ali Hamiche, Jean Cadet, Stefan Dimitrov, Philippe Bouvet, Dimitar Angelov. Mol Cell Biol 2007
80
8

Exploring the Free Energy Landscape of Nucleosomes.
Bin Zhang, Weihua Zheng, Garegin A Papoian, Peter G Wolynes. J Am Chem Soc 2016
63
11

RSC, an essential, abundant chromatin-remodeling complex.
B R Cairns, Y Lorch, Y Li, M Zhang, L Lacomis, H Erdjument-Bromage, P Tempst, J Du, B Laurent, R D Kornberg. Cell 1996
556
7

MNase-Sensitive Complexes in Yeast: Nucleosomes and Non-histone Barriers.
Răzvan V Chereji, Josefina Ocampo, David J Clark. Mol Cell 2017
67
10


Crystal structure of the overlapping dinucleosome composed of hexasome and octasome.
Daiki Kato, Akihisa Osakabe, Yasuhiro Arimura, Yuka Mizukami, Naoki Horikoshi, Kazumi Saikusa, Satoko Akashi, Yoshifumi Nishimura, Sam-Yong Park, Jumpei Nogami,[...]. Science 2017
41
17

Multiplexing Genetic and Nucleosome Positioning Codes: A Computational Approach.
Behrouz Eslami-Mossallam, Raoul D Schram, Marco Tompitak, John van Noort, Helmut Schiessel. PLoS One 2016
26
26

Nucleosome breathing and remodeling constrain CRISPR-Cas9 function.
R Stefan Isaac, Fuguo Jiang, Jennifer A Doudna, Wendell A Lim, Geeta J Narlikar, Ricardo Almeida. Elife 2016
110
7

Mechanism of chromatin remodelling revealed by the Snf2-nucleosome structure.
Xiaoyu Liu, Meijing Li, Xian Xia, Xueming Li, Zhucheng Chen. Nature 2017
121
7

Nucleosome structure and function.
Robert K McGinty, Song Tan. Chem Rev 2015
205
7

Structure and Dynamics of a 197 bp Nucleosome in Complex with Linker Histone H1.
Jan Bednar, Isabel Garcia-Saez, Ramachandran Boopathi, Amber R Cutter, Gabor Papai, Anna Reymer, Sajad H Syed, Imtiaz Nisar Lone, Ognyan Tonchev, Corinne Crucifix,[...]. Mol Cell 2017
118
7

Molecular Mechanism of Spontaneous Nucleosome Unraveling.
David Winogradoff, Aleksei Aksimentiev. J Mol Biol 2019
27
25

Poly(dA:dT) tracts: major determinants of nucleosome organization.
Eran Segal, Jonathan Widom. Curr Opin Struct Biol 2009
272
7

Pioneer Factor-Nucleosome Binding Events during Differentiation Are Motif Encoded.
Michael P Meers, Derek H Janssens, Steven Henikoff. Mol Cell 2019
34
20


A packing mechanism for nucleosome organization reconstituted across a eukaryotic genome.
Zhenhai Zhang, Christian J Wippo, Megha Wal, Elissa Ward, Philipp Korber, B Franklin Pugh. Science 2011
219
6

The conformational state of the nucleosome entry-exit site modulates TATA box-specific TBP binding.
Aaron R Hieb, Alexander Gansen, Vera Böhm, Jörg Langowski. Nucleic Acids Res 2014
17
35

A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters.
Gwenael Badis, Esther T Chan, Harm van Bakel, Lourdes Pena-Castillo, Desiree Tillo, Kyle Tsui, Clayton D Carlson, Andrea J Gossett, Michael J Hasinoff, Christopher L Warren,[...]. Mol Cell 2008
323
6


Chromatin fibers are formed by heterogeneous groups of nucleosomes in vivo.
Maria Aurelia Ricci, Carlo Manzo, María Filomena García-Parajo, Melike Lakadamyali, Maria Pia Cosma. Cell 2015
304
6

DNA translocation and loop formation mechanism of chromatin remodeling by SWI/SNF and RSC.
Yongli Zhang, Corey L Smith, Anjanabha Saha, Stephan W Grill, Shirley Mihardja, Steven B Smith, Bradley R Cairns, Craig L Peterson, Carlos Bustamante. Mol Cell 2006
152
6

Nucleosome repositioning via loop formation.
I M Kulić, H Schiessel. Biophys J 2003
48
12

Nucleosomes can invade DNA territories occupied by their neighbors.
Maik Engeholm, Martijn de Jager, Andrew Flaus, Ruth Brenk, John van Noort, Tom Owen-Hughes. Nat Struct Mol Biol 2009
77
7

Mechanism of chromatin remodeling and recovery during passage of RNA polymerase II.
Olga I Kulaeva, Daria A Gaykalova, Nikolai A Pestov, Viktor V Golovastov, Dmitry G Vassylyev, Irina Artsimovitch, Vasily M Studitsky. Nat Struct Mol Biol 2009
95
6

Ubiquitous nucleosome crowding in the yeast genome.
Răzvan V Chereji, Alexandre V Morozov. Proc Natl Acad Sci U S A 2014
28
21


Nucleosomal elements that control the topography of the barrier to transcription.
Lacramioara Bintu, Toyotaka Ishibashi, Manchuta Dangkulwanich, Yueh-Yi Wu, Lucyna Lubkowska, Mikhail Kashlev, Carlos Bustamante. Cell 2012
113
6

Rigid-body molecular dynamics of DNA inside a nucleosome.
Arman Fathizadeh, Azim Berdy Besya, Mohammad Reza Ejtehadi, Helmut Schiessel. Eur Phys J E Soft Matter 2013
23
26


DNA spools under tension.
I M Kulić, H Schiessel. Phys Rev Lett 2004
78
7

DNA shape dominates sequence affinity in nucleosome formation.
Gordon S Freeman, Joshua P Lequieu, Daniel M Hinckley, Jonathan K Whitmer, Juan J de Pablo. Phys Rev Lett 2014
50
12

Rotational dynamics of DNA on the nucleosome surface markedly impact accessibility to a DNA repair enzyme.
John M Hinz, Yesenia Rodriguez, Michael J Smerdon. Proc Natl Acad Sci U S A 2010
63
9

Uracil DNA glycosylase activity on nucleosomal DNA depends on rotational orientation of targets.
Hope A Cole, Jenna M Tabor-Godwin, Jeffrey J Hayes. J Biol Chem 2010
62
9


Suppressed catalytic activity of base excision repair enzymes on rotationally positioned uracil in nucleosomes.
Brian C Beard, Samuel H Wilson, Michael J Smerdon. Proc Natl Acad Sci U S A 2003
112
6



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.