Mamunur Rashid, Carla Daniela Robles-Espinoza, Alistair G Rust, David J Adams. Bioinformatics 2013
Times Cited: 24
Times Cited: 24
Times Cited
Times Co-cited
Similarity
Maftools: efficient and comprehensive analysis of somatic variants in cancer.
Anand Mayakonda, De-Chen Lin, Yassen Assenov, Christoph Plass, H Phillip Koeffler. Genome Res 2018
Anand Mayakonda, De-Chen Lin, Yassen Assenov, Christoph Plass, H Phillip Koeffler. Genome Res 2018
4
Detecting and annotating genetic variations using the HugeSeq pipeline.
Hugo Y K Lam, Cuiping Pan, Michael J Clark, Phil Lacroute, Rui Chen, Rajini Haraksingh, Maeve O'Huallachain, Mark B Gerstein, Jeffrey M Kidd, Carlos D Bustamante,[...]. Nat Biotechnol 2012
Hugo Y K Lam, Cuiping Pan, Michael J Clark, Phil Lacroute, Rui Chen, Rajini Haraksingh, Maeve O'Huallachain, Mark B Gerstein, Jeffrey M Kidd, Carlos D Bustamante,[...]. Nat Biotechnol 2012
4
Identification of cancer driver genes based on nucleotide context.
Felix Dietlein, Donate Weghorn, Amaro Taylor-Weiner, André Richters, Brendan Reardon, David Liu, Eric S Lander, Eliezer M Van Allen, Shamil R Sunyaev. Nat Genet 2020
Felix Dietlein, Donate Weghorn, Amaro Taylor-Weiner, André Richters, Brendan Reardon, David Liu, Eric S Lander, Eliezer M Van Allen, Shamil R Sunyaev. Nat Genet 2020
4
Comprehensive fundamental somatic variant calling and quality management strategies for human cancer genomes.
Xiaoyu He, Shanyu Chen, Ruilin Li, Xinyin Han, Zhipeng He, Danyang Yuan, Shuying Zhang, Xiaohong Duan, Beifang Niu. Brief Bioinform 2021
Xiaoyu He, Shanyu Chen, Ruilin Li, Xinyin Han, Zhipeng He, Danyang Yuan, Shuying Zhang, Xiaohong Duan, Beifang Niu. Brief Bioinform 2021
25
The landscape of cancer genes and mutational processes in breast cancer.
Philip J Stephens, Patrick S Tarpey, Helen Davies, Peter Van Loo, Chris Greenman, David C Wedge, Serena Nik-Zainal, Sancha Martin, Ignacio Varela, Graham R Bignell,[...]. Nature 2012
Philip J Stephens, Patrick S Tarpey, Helen Davies, Peter Van Loo, Chris Greenman, David C Wedge, Serena Nik-Zainal, Sancha Martin, Ignacio Varela, Graham R Bignell,[...]. Nature 2012
4
Break-seq reveals hydroxyurea-induced chromosome fragility as a result of unscheduled conflict between DNA replication and transcription.
Elizabeth A Hoffman, Andrew McCulley, Brian Haarer, Remigiusz Arnak, Wenyi Feng. Genome Res 2015
Elizabeth A Hoffman, Andrew McCulley, Brian Haarer, Remigiusz Arnak, Wenyi Feng. Genome Res 2015
4
Bpipe: a tool for running and managing bioinformatics pipelines.
Simon P Sadedin, Bernard Pope, Alicia Oshlack. Bioinformatics 2012
Simon P Sadedin, Bernard Pope, Alicia Oshlack. Bioinformatics 2012
4
A compendium of mutational cancer driver genes.
Francisco Martínez-Jiménez, Ferran Muiños, Inés Sentís, Jordi Deu-Pons, Iker Reyes-Salazar, Claudia Arnedo-Pac, Loris Mularoni, Oriol Pich, Jose Bonet, Hanna Kranas,[...]. Nat Rev Cancer 2020
Francisco Martínez-Jiménez, Ferran Muiños, Inés Sentís, Jordi Deu-Pons, Iker Reyes-Salazar, Claudia Arnedo-Pac, Loris Mularoni, Oriol Pich, Jose Bonet, Hanna Kranas,[...]. Nat Rev Cancer 2020
4
Germline cancer susceptibility gene variants, somatic second hits, and survival outcomes in patients with resected pancreatic cancer.
Matthew B Yurgelun, Anu B Chittenden, Vicente Morales-Oyarvide, Douglas A Rubinson, Richard F Dunne, Margaret M Kozak, Zhi Rong Qian, Marisa W Welch, Lauren K Brais, Annacarolina Da Silva,[...]. Genet Med 2019
Matthew B Yurgelun, Anu B Chittenden, Vicente Morales-Oyarvide, Douglas A Rubinson, Richard F Dunne, Margaret M Kozak, Zhi Rong Qian, Marisa W Welch, Lauren K Brais, Annacarolina Da Silva,[...]. Genet Med 2019
4
iWhale: a computational pipeline based on Docker and SCons for detection and annotation of somatic variants in cancer WES data.
Andrea Binatti, Silvia Bresolin, Stefania Bortoluzzi, Alessandro Coppe. Brief Bioinform 2021
Andrea Binatti, Silvia Bresolin, Stefania Bortoluzzi, Alessandro Coppe. Brief Bioinform 2021
20
SNVer: a statistical tool for variant calling in analysis of pooled or individual next-generation sequencing data.
Zhi Wei, Wei Wang, Pingzhao Hu, Gholson J Lyon, Hakon Hakonarson. Nucleic Acids Res 2011
Zhi Wei, Wei Wang, Pingzhao Hu, Gholson J Lyon, Hakon Hakonarson. Nucleic Acids Res 2011
4
Nextflow enables reproducible computational workflows.
Paolo Di Tommaso, Maria Chatzou, Evan W Floden, Pablo Prieto Barja, Emilio Palumbo, Cedric Notredame. Nat Biotechnol 2017
Paolo Di Tommaso, Maria Chatzou, Evan W Floden, Pablo Prieto Barja, Emilio Palumbo, Cedric Notredame. Nat Biotechnol 2017
4
Snakemake--a scalable bioinformatics workflow engine.
Johannes Köster, Sven Rahmann. Bioinformatics 2012
Johannes Köster, Sven Rahmann. Bioinformatics 2012
4
Reactome: a knowledgebase of biological pathways.
G Joshi-Tope, M Gillespie, I Vastrik, P D'Eustachio, E Schmidt, B de Bono, B Jassal, G R Gopinath, G R Wu, L Matthews,[...]. Nucleic Acids Res 2005
G Joshi-Tope, M Gillespie, I Vastrik, P D'Eustachio, E Schmidt, B de Bono, B Jassal, G R Gopinath, G R Wu, L Matthews,[...]. Nucleic Acids Res 2005
4
Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences.
Jeremy Goecks, Anton Nekrutenko, James Taylor. Genome Biol 2010
Jeremy Goecks, Anton Nekrutenko, James Taylor. Genome Biol 2010
4
Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.