A citation-based method for searching scientific literature

Mamunur Rashid, Carla Daniela Robles-Espinoza, Alistair G Rust, David J Adams. Bioinformatics 2013
Times Cited: 24







List of co-cited articles
132 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Maftools: efficient and comprehensive analysis of somatic variants in cancer.
Anand Mayakonda, De-Chen Lin, Yassen Assenov, Christoph Plass, H Phillip Koeffler. Genome Res 2018
987
4

Detecting and annotating genetic variations using the HugeSeq pipeline.
Hugo Y K Lam, Cuiping Pan, Michael J Clark, Phil Lacroute, Rui Chen, Rajini Haraksingh, Maeve O'Huallachain, Mark B Gerstein, Jeffrey M Kidd, Carlos D Bustamante,[...]. Nat Biotechnol 2012
76
4

Identification of cancer driver genes based on nucleotide context.
Felix Dietlein, Donate Weghorn, Amaro Taylor-Weiner, André Richters, Brendan Reardon, David Liu, Eric S Lander, Eliezer M Van Allen, Shamil R Sunyaev. Nat Genet 2020
77
4

Comprehensive fundamental somatic variant calling and quality management strategies for human cancer genomes.
Xiaoyu He, Shanyu Chen, Ruilin Li, Xinyin Han, Zhipeng He, Danyang Yuan, Shuying Zhang, Xiaohong Duan, Beifang Niu. Brief Bioinform 2021
4
25

The landscape of cancer genes and mutational processes in breast cancer.
Philip J Stephens, Patrick S Tarpey, Helen Davies, Peter Van Loo, Chris Greenman, David C Wedge, Serena Nik-Zainal, Sancha Martin, Ignacio Varela, Graham R Bignell,[...]. Nature 2012
4

Break-seq reveals hydroxyurea-induced chromosome fragility as a result of unscheduled conflict between DNA replication and transcription.
Elizabeth A Hoffman, Andrew McCulley, Brian Haarer, Remigiusz Arnak, Wenyi Feng. Genome Res 2015
54
4

Bpipe: a tool for running and managing bioinformatics pipelines.
Simon P Sadedin, Bernard Pope, Alicia Oshlack. Bioinformatics 2012
85
4

A compendium of mutational cancer driver genes.
Francisco Martínez-Jiménez, Ferran Muiños, Inés Sentís, Jordi Deu-Pons, Iker Reyes-Salazar, Claudia Arnedo-Pac, Loris Mularoni, Oriol Pich, Jose Bonet, Hanna Kranas,[...]. Nat Rev Cancer 2020
210
4

Germline cancer susceptibility gene variants, somatic second hits, and survival outcomes in patients with resected pancreatic cancer.
Matthew B Yurgelun, Anu B Chittenden, Vicente Morales-Oyarvide, Douglas A Rubinson, Richard F Dunne, Margaret M Kozak, Zhi Rong Qian, Marisa W Welch, Lauren K Brais, Annacarolina Da Silva,[...]. Genet Med 2019
98
4

iWhale: a computational pipeline based on Docker and SCons for detection and annotation of somatic variants in cancer WES data.
Andrea Binatti, Silvia Bresolin, Stefania Bortoluzzi, Alessandro Coppe. Brief Bioinform 2021
5
20

SNVer: a statistical tool for variant calling in analysis of pooled or individual next-generation sequencing data.
Zhi Wei, Wei Wang, Pingzhao Hu, Gholson J Lyon, Hakon Hakonarson. Nucleic Acids Res 2011
168
4

Nextflow enables reproducible computational workflows.
Paolo Di Tommaso, Maria Chatzou, Evan W Floden, Pablo Prieto Barja, Emilio Palumbo, Cedric Notredame. Nat Biotechnol 2017
450
4

Snakemake--a scalable bioinformatics workflow engine.
Johannes Köster, Sven Rahmann. Bioinformatics 2012
860
4

Biomarker definitions and their applications.
Robert M Califf. Exp Biol Med (Maywood) 2018
245
4

1000 Genomes project.
Nayanah Siva. Nat Biotechnol 2008
231
4

Reactome: a knowledgebase of biological pathways.
G Joshi-Tope, M Gillespie, I Vastrik, P D'Eustachio, E Schmidt, B de Bono, B Jassal, G R Gopinath, G R Wu, L Matthews,[...]. Nucleic Acids Res 2005
784
4



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.