A citation-based method for searching scientific literature

Alina Patke, Patricia J Murphy, Onur Emre Onat, Ana C Krieger, Tayfun Özçelik, Scott S Campbell, Michael W Young. Cell 2017
Times Cited: 168







List of co-cited articles
3990 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Genome-wide RNAi screening in Caenorhabditis elegans.
Ravi S Kamath, Julie Ahringer. Methods 2003
927
1



Developmental function and state transitions of a gene expression oscillator in Caenorhabditis elegans.
Milou Wm Meeuse, Yannick P Hauser, Lucas J Morales Moya, Gert-Jan Hendriks, Jan Eglinger, Guy Bogaarts, Charisios Tsiairis, Helge Großhans. Mol Syst Biol 2020
4
25

Unlocking the secrets of the genome.
Susan E Celniker, Laura A L Dillon, Mark B Gerstein, Kristin C Gunsalus, Steven Henikoff, Gary H Karpen, Manolis Kellis, Eric C Lai, Jason D Lieb, David M MacAlpine,[...]. Nature 2009
579
1

Phosphoproteomics-Based Profiling of Kinase Activities in Cancer Cells.
Jakob Wirbel, Pedro Cutillas, Julio Saez-Rodriguez. Methods Mol Biol 2018
17
5

ShinyGO: a graphical gene-set enrichment tool for animals and plants.
Steven Xijin Ge, Dongmin Jung, Runan Yao. Bioinformatics 2020
433
1

Genome engineering using the CRISPR-Cas9 system.
F Ann Ran, Patrick D Hsu, Jason Wright, Vineeta Agarwala, David A Scott, Feng Zhang. Nat Protoc 2013
1

Kinase-substrate enrichment analysis provides insights into the heterogeneity of signaling pathway activation in leukemia cells.
Pedro Casado, Juan-Carlos Rodriguez-Prados, Sabina C Cosulich, Sylvie Guichard, Bart Vanhaesebroeck, Simon Joel, Pedro R Cutillas. Sci Signal 2013
188
1

BMAL1 shuttling controls transactivation and degradation of the CLOCK/BMAL1 heterodimer.
Ilmin Kwon, Jiwon Lee, Seok Hoon Chang, Neon Cheol Jung, Byung Ju Lee, Gi Hoon Son, Kyungjin Kim, Kun Ho Lee. Mol Cell Biol 2006
122
1

JNK regulates the photic response of the mammalian circadian clock.
Hikari Yoshitane, Sato Honma, Kiyomichi Imamura, Hiroto Nakajima, Shin-ya Nishide, Daisuke Ono, Hiroshi Kiyota, Naoya Shinozaki, Hirokazu Matsuki, Naoya Wada,[...]. EMBO Rep 2012
33
3

Transcriptional repressor TIEG1 regulates Bmal1 gene through GC box and controls circadian clockwork.
Tsuyoshi Hirota, Naohiro Kon, Takashi Itagaki, Naosuke Hoshina, Toshiyuki Okano, Yoshitaka Fukada. Genes Cells 2010
27
3

ASK family kinases mediate cellular stress and redox signaling to circadian clock.
Kiyomichi Imamura, Hikari Yoshitane, Kazuki Hattori, Mitsuo Yamaguchi, Kento Yoshida, Takenori Okubo, Isao Naguro, Hidenori Ichijo, Yoshitaka Fukada. Proc Natl Acad Sci U S A 2018
18
5

Circadian rhythms: molecular basis of the clock.
L D Wilsbacher, J S Takahashi. Curr Opin Genet Dev 1998
61
1

Robust, tunable biological oscillations from interlinked positive and negative feedback loops.
Tony Yu-Chen Tsai, Yoon Sup Choi, Wenzhe Ma, Joseph R Pomerening, Chao Tang, James E Ferrell. Science 2008
405
1

Long-range temporal coordination of gene expression in synthetic microbial consortia.
Jae Kyoung Kim, Ye Chen, Andrew J Hirning, Razan N Alnahhas, Krešimir Josić, Matthew R Bennett. Nat Chem Biol 2019
15
6

SYNTHETIC BIOLOGY. Emergent genetic oscillations in a synthetic microbial consortium.
Ye Chen, Jae Kyoung Kim, Andrew J Hirning, Krešimir Josić, Matthew R Bennett. Science 2015
145
1


ADARB1 catalyzes circadian A-to-I editing and regulates RNA rhythm.
Hideki Terajima, Hikari Yoshitane, Haruka Ozaki, Yutaka Suzuki, Shigeki Shimba, Shinya Kuroda, Wataru Iwasaki, Yoshitaka Fukada. Nat Genet 2017
47
2

What time is it? Deep learning approaches for circadian rhythms.
Forest Agostinelli, Nicholas Ceglia, Babak Shahbaba, Paolo Sassone-Corsi, Pierre Baldi. Bioinformatics 2016
34
2

REV-ERB nuclear receptors in the suprachiasmatic nucleus control circadian period and restrict diet-induced obesity.
Marine Adlanmerini, Brianna M Krusen, Hoang C B Nguyen, Clare W Teng, Lauren N Woodie, Michael C Tackenberg, Caroline E Geisler, Jane Gaisinsky, Lindsey C Peed, Bryce J Carpenter,[...]. Sci Adv 2021
6
16

Modeling and validating chronic pharmacological manipulation of circadian rhythms.
J K Kim, D B Forger, M Marconi, D Wood, A Doran, T Wager, C Chang, K M Walton. CPT Pharmacometrics Syst Pharmacol 2013
33
3

CRISPRdirect: software for designing CRISPR/Cas guide RNA with reduced off-target sites.
Yuki Naito, Kimihiro Hino, Hidemasa Bono, Kumiko Ui-Tei. Bioinformatics 2015
552
1

A-to-I RNA editing enzyme ADAR2 regulates light-induced circadian phase-shift.
Hideki Terajima, Hikari Yoshitane, Tomoko Yoshikawa, Yasufumi Shigeyoshi, Yoshitaka Fukada. Sci Rep 2018
8
12

Post-translational regulation of circadian transcriptional CLOCK(NPAS2)/BMAL1 complex by CRYPTOCHROMES.
Roman V Kondratov, Anna A Kondratova, Choogon Lee, Victoria Y Gorbacheva, Mikhail V Chernov, Marina P Antoch. Cell Cycle 2006
66
1

BMAL1-dependent circadian oscillation of nuclear CLOCK: posttranslational events induced by dimerization of transcriptional activators of the mammalian clock system.
Roman V Kondratov, Mikhail V Chernov, Anna A Kondratova, Victoria Y Gorbacheva, Andrei V Gudkov, Marina P Antoch. Genes Dev 2003
185
1

Genetic fine mapping and genomic annotation defines causal mechanisms at type 2 diabetes susceptibility loci.
Kyle J Gaulton, Teresa Ferreira, Yeji Lee, Anne Raimondo, Reedik Mägi, Michael E Reschen, Anubha Mahajan, Adam Locke, N William Rayner, Neil Robertson,[...]. Nat Genet 2015
261
1



Neurochemical features of idiopathic restless legs syndrome.
Félix Javier Jiménez-Jiménez, Hortensia Alonso-Navarro, Elena García-Martín, José A G Agúndez. Sleep Med Rev 2019
22
4

Heritability and Genome-Wide Association Analyses of Sleep Duration in Children: The EAGLE Consortium.
Marcella Marinelli, Irene Pappa, Mariona Bustamante, Carolina Bonilla, Anna Suarez, Carla M Tiesler, Natalia Vilor-Tejedor, Mohammad Hadi Zafarmand, Mar Alvarez-Pedrerol, Sture Andersson,[...]. Sleep 2016
23
4

Orexin cell transplant reduces behavioral arrest severity in narcoleptic mice.
Ana Clementina Equihua-Benítez, Julián A Equihua-Benítez, Khalil Guzmán-Vásquez, Oscar Prospero-García, René Drucker-Colín. Brain Res 2020
2
50

Molecular and electrophysiological evidence for net synaptic potentiation in wake and depression in sleep.
Vladyslav V Vyazovskiy, Chiara Cirelli, Martha Pfister-Genskow, Ugo Faraguna, Giulio Tononi. Nat Neurosci 2008
507
1


Sleep and longitudinal cognitive performance in preclinical and early symptomatic Alzheimer's disease.
Brendan P Lucey, Julie Wisch, Anna H Boerwinkle, Eric C Landsness, Cristina D Toedebusch, Jennifer S McLeland, Omar H Butt, Jason Hassenstab, John C Morris, Beau M Ances,[...]. Brain 2021
11
9

Sleep characteristics modify the association of genetic predisposition with obesity and anthropometric measurements in 119,679 UK Biobank participants.
Carlos Celis-Morales, Donald M Lyall, Yibing Guo, Lewis Steell, Daniel Llanas, Joey Ward, Daniel F Mackay, Stephany M Biello, Mark Es Bailey, Jill P Pell,[...]. Am J Clin Nutr 2017
23
4

Autoimmunity to hypocretin and molecular mimicry to flu in type 1 narcolepsy.
Guo Luo, Aditya Ambati, Ling Lin, Mélodie Bonvalet, Markku Partinen, Xuhuai Ji, Holden Terry Maecker, Emmanuel Jean-Marie Mignot. Proc Natl Acad Sci U S A 2018
94
1

Mouse Model for Protein Tyrosine Phosphatase D (PTPRD) Associations with Restless Leg Syndrome or Willis-Ekbom Disease and Addiction: Reduced Expression Alters Locomotion, Sleep Behaviors and Cocaine-Conditioned Place Preference.
Jana Drgonova, Donna Walther, Katherine J Wang, G Luke Hartstein, Bryson Lochte, Juan Troncoso, Noriko Uetani, Yoichiro Iwakura, George R Uhl. Mol Med 2015
28
3


The electroencephalographic fingerprint of sleep is genetically determined: a twin study.
Luigi De Gennaro, Cristina Marzano, Fabiana Fratello, Fabio Moroni, Maria Concetta Pellicciari, Fabio Ferlazzo, Stefania Costa, Alessandro Couyoumdjian, Giuseppe Curcio, Emilia Sforza,[...]. Ann Neurol 2008
165
1

Melatonin Effects on Glucose Metabolism: Time To Unlock the Controversy.
Marta Garaulet, Jingyi Qian, Jose C Florez, Josephine Arendt, Richa Saxena, Frank A J L Scheer. Trends Endocrinol Metab 2020
50
2

Molecular Mechanisms of Sleep Homeostasis in Flies and Mammals.
Ravi Allada, Chiara Cirelli, Amita Sehgal. Cold Spring Harb Perspect Biol 2017
65
1

An atlas of genetic correlations across human diseases and traits.
Brendan Bulik-Sullivan, Hilary K Finucane, Verneri Anttila, Alexander Gusev, Felix R Day, Po-Ru Loh, Laramie Duncan, John R B Perry, Nick Patterson, Elise B Robinson,[...]. Nat Genet 2015
1

Fxr1 regulates sleep and synaptic homeostasis.
Jivan Khlghatyan, Alesya Evstratova, Lusine Bozoyan, Simon Chamberland, Dipashree Chatterjee, Aleksandra Marakhovskaia, Tiago Soares Silva, Katalin Toth, Valerie Mongrain, Jean-Martin Beaulieu. EMBO J 2020
13
7

A Genome-Wide Association Study of IVGTT-Based Measures of First-Phase Insulin Secretion Refines the Underlying Physiology of Type 2 Diabetes Variants.
Andrew R Wood, Anna Jonsson, Anne U Jackson, Nan Wang, Nienke van Leewen, Nicholette D Palmer, Sayuko Kobes, Joris Deelen, Lorena Boquete-Vilarino, Jussi Paananen,[...]. Diabetes 2017
61
1

Prospective study of chronotype and incident depression among middle- and older-aged women in the Nurses' Health Study II.
Céline Vetter, Shun-Chiao Chang, Elizabeth E Devore, Florian Rohrer, Olivia I Okereke, Eva S Schernhammer. J Psychiatr Res 2018
29
3

Circadian rhythms in cultured mammalian retina.
G Tosini, M Menaker. Science 1996
551
1

Entrainment of the human circadian clock.
T Roenneberg, M Merrow. Cold Spring Harb Symp Quant Biol 2007
147
1

Overview of Sleep and Circadian Rhythm Disorders in Parkinson Disease.
Priti Gros, Aleksandar Videnovic. Clin Geriatr Med 2020
16
6

Comparison of Heritability Estimation and Linkage Analysis for Multiple Traits Using Principal Component Analyses.
Jingjing Liang, Brian E Cade, Heming Wang, Han Chen, Kevin J Gleason, Emma K Larkin, Richa Saxena, Xihong Lin, Susan Redline, Xiaofeng Zhu. Genet Epidemiol 2016
20
5


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.