A citation-based method for searching scientific literature

Laura J Dumas, Majesta S O'Bleness, Jonathan M Davis, C Michael Dickens, Nathan Anderson, J G Keeney, Jay Jackson, Megan Sikela, Armin Raznahan, Jay Giedd, Judith Rapoport, Sandesh S C Nagamani, Ayelet Erez, Nicola Brunetti-Pierri, Rachel Sugalski, James R Lupski, Tasha Fingerlin, Sau Wai Cheung, James M Sikela. Am J Hum Genet 2012
Times Cited: 67







List of co-cited articles
513 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The evolution of gene expression levels in mammalian organs.
David Brawand, Magali Soumillon, Anamaria Necsulea, Philippe Julien, Gábor Csárdi, Patrick Harrigan, Manuela Weier, Angélica Liechti, Ayinuer Aximu-Petri, Martin Kircher,[...]. Nature 2011
671
4

A high-resolution map of human evolutionary constraint using 29 mammals.
Kerstin Lindblad-Toh, Manuel Garber, Or Zuk, Michael F Lin, Brian J Parker, Stefan Washietl, Pouya Kheradpour, Jason Ernst, Gregory Jordan, Evan Mauceli,[...]. Nature 2011
656
4

Structural variation in the human genome and its role in disease.
Paweł Stankiewicz, James R Lupski. Annu Rev Med 2010
670
4

Evolutionary and biomedical insights from the rhesus macaque genome.
Richard A Gibbs, Jeffrey Rogers, Michael G Katze, Roger Bumgarner, George M Weinstock, Elaine R Mardis, Karin A Remington, Robert L Strausberg, J Craig Venter, Richard K Wilson,[...]. Science 2007
905
4



Analysis of the largest tandemly repeated DNA families in the human genome.
Peter E Warburton, Dan Hasson, Flavia Guillem, Chloe Lescale, Xiaoping Jin, Gyorgy Abrusan. BMC Genomics 2008
91
4

Clan genomics and the complex architecture of human disease.
James R Lupski, John W Belmont, Eric Boerwinkle, Richard A Gibbs. Cell 2011
222
4


A fast-evolving human NPAS3 enhancer gained reporter expression in the developing forebrain of transgenic mice.
Gretel B Kamm, Rodrigo López-Leal, Juan R Lorenzo, Lucía F Franchini. Philos Trans R Soc Lond B Biol Sci 2013
23
13

The developmental brain gene NPAS3 contains the largest number of accelerated regulatory sequences in the human genome.
Gretel B Kamm, Francisco Pisciottano, Rafi Kliger, Lucía F Franchini. Mol Biol Evol 2013
46
6

Molecular mechanism for duplication 17p11.2- the homologous recombination reciprocal of the Smith-Magenis microdeletion.
L Potocki, K S Chen, S S Park, D E Osterholm, M A Withers, V Kimonis, A M Summers, W S Meschino, K Anyane-Yeboa, C D Kashork,[...]. Nat Genet 2000
231
4

Homologous recombination of a flanking repeat gene cluster is a mechanism for a common contiguous gene deletion syndrome.
K S Chen, P Manian, T Koeuth, L Potocki, Q Zhao, A C Chinault, C C Lee, J R Lupski. Nat Genet 1997
287
4

Reciprocal crossovers and a positional preference for strand exchange in recombination events resulting in deletion or duplication of chromosome 17p11.2.
Weimin Bi, Sung-Sup Park, Christine J Shaw, Marjorie A Withers, Pragna I Patel, James R Lupski. Am J Hum Genet 2003
93
4

Mapping copy number variation by population-scale genome sequencing.
Ryan E Mills, Klaudia Walter, Chip Stewart, Robert E Handsaker, Ken Chen, Can Alkan, Alexej Abyzov, Seungtai Chris Yoon, Kai Ye, R Keira Cheetham,[...]. Nature 2011
698
4


Recurrent reciprocal 16p11.2 rearrangements associated with global developmental delay, behavioural problems, dysmorphism, epilepsy, and abnormal head size.
Marwan Shinawi, Pengfei Liu, Sung-Hae L Kang, Joseph Shen, John W Belmont, Daryl A Scott, Frank J Probst, William J Craigen, Brett H Graham, Amber Pursley,[...]. J Med Genet 2010
317
4

TBX6 null variants and a common hypomorphic allele in congenital scoliosis.
N Wu, X Ming, J Xiao, Z Wu, X Chen, M Shinawi, Y Shen, G Yu, J Liu, H Xie,[...]. N Engl J Med 2015
145
4


Frequency of nonallelic homologous recombination is correlated with length of homology: evidence that ectopic synapsis precedes ectopic crossing-over.
Pengfei Liu, Melanie Lacaria, Feng Zhang, Marjorie Withers, P J Hastings, James R Lupski. Am J Hum Genet 2011
73
4

Accelerated Profile HMM Searches.
Sean R Eddy. PLoS Comput Biol 2011
4

Generation of mice lacking DUF1220 protein domains: effects on fecundity and hyperactivity.
J G Keeney, M S O'Bleness, N Anderson, J M Davis, N Arevalo, N Busquet, W Chick, J Rozman, S M Hölter, L Garrett,[...]. Mamm Genome 2015
4
75

Adaptive evolution of four microcephaly genes and the evolution of brain size in anthropoid primates.
Stephen H Montgomery, Isabella Capellini, Chris Venditti, Robert A Barton, Nicholas I Mundy. Mol Biol Evol 2011
74
4

High-resolution human genome structure by single-molecule analysis.
Brian Teague, Michael S Waterman, Steven Goldstein, Konstantinos Potamousis, Shiguo Zhou, Susan Reslewic, Deepayan Sarkar, Anton Valouev, Christopher Churas, Jeffrey M Kidd,[...]. Proc Natl Acad Sci U S A 2010
115
4

Nonrecurrent 17p11.2p12 Rearrangement Events that Result in Two Concomitant Genomic Disorders: The PMP22-RAI1 Contiguous Gene Duplication Syndrome.
Bo Yuan, Tamar Harel, Shen Gu, Pengfei Liu, Lydie Burglen, Sandra Chantot-Bastaraud, Violet Gelowani, Christine R Beck, Claudia M B Carvalho, Sau Wai Cheung,[...]. Am J Hum Genet 2015
18
16


Fast-evolving noncoding sequences in the human genome.
Christine P Bird, Barbara E Stranger, Maureen Liu, Daryl J Thomas, Catherine E Ingle, Claude Beazley, Webb Miller, Matthew E Hurles, Emmanouil T Dermitzakis. Genome Biol 2007
96
4

Did brain-specific genes evolve faster in humans than in chimpanzees?
Peng Shi, Margaret A Bakewell, Jianzhi Zhang. Trends Genet 2006
37
8


An evidence-based approach to establish the functional and clinical significance of copy number variants in intellectual and developmental disabilities.
Erin B Kaminsky, Vineith Kaul, Justin Paschall, Deanna M Church, Brian Bunke, Dawn Kunig, Daniel Moreno-De-Luca, Andres Moreno-De-Luca, Jennifer G Mulle, Stephen T Warren,[...]. Genet Med 2011
286
4

NBPF1, a tumor suppressor candidate in neuroblastoma, exerts growth inhibitory effects by inducing a G1 cell cycle arrest.
Vanessa Andries, Karl Vandepoele, Katrien Staes, Geert Berx, Pieter Bogaert, Gert Van Isterdael, Daisy Ginneberge, Eef Parthoens, Jonathan Vandenbussche, Kris Gevaert,[...]. BMC Cancer 2015
21
14

The Database of Genomic Variants: a curated collection of structural variation in the human genome.
Jeffrey R MacDonald, Robert Ziman, Ryan K C Yuen, Lars Feuk, Stephen W Scherer. Nucleic Acids Res 2014
632
4

Similar patterns of cortical expansion during human development and evolution.
Jason Hill, Terrie Inder, Jeffrey Neil, Donna Dierker, John Harwell, David Van Essen. Proc Natl Acad Sci U S A 2010
281
4


Transcriptional landscape of the prenatal human brain.
Jeremy A Miller, Song-Lin Ding, Susan M Sunkin, Kimberly A Smith, Lydia Ng, Aaron Szafer, Amanda Ebbert, Zackery L Riley, Joshua J Royall, Kaylynn Aiona,[...]. Nature 2014
589
4

Accelerated rate of gene gain and loss in primates.
Matthew W Hahn, Jeffery P Demuth, Sang-Gook Han. Genetics 2007
95
4

Evolutionary genomics. Evolutionary changes in promoter and enhancer activity during human corticogenesis.
Steven K Reilly, Jun Yin, Albert E Ayoub, Deena Emera, Jing Leng, Justin Cotney, Richard Sarro, Pasko Rakic, James P Noonan. Science 2015
115
4

Molecular identity of human outer radial glia during cortical development.
Alex A Pollen, Tomasz J Nowakowski, Jiadong Chen, Hanna Retallack, Carmen Sandoval-Espinosa, Cory R Nicholas, Joe Shuga, Siyuan John Liu, Michael C Oldham, Aaron Diaz,[...]. Cell 2015
349
4

Differences and similarities between human and chimpanzee neural progenitors during cerebral cortex development.
Felipe Mora-Bermúdez, Farhath Badsha, Sabina Kanton, J Gray Camp, Benjamin Vernot, Kathrin Köhler, Birger Voigt, Keisuke Okita, Tomislav Maricic, Zhisong He,[...]. Elife 2016
97
4

A forkhead-domain gene is mutated in a severe speech and language disorder.
C S Lai, S E Fisher, J A Hurst, F Vargha-Khadem, A P Monaco. Nature 2001
975
4

Congenital heart defects in recurrent reciprocal 1q21.1 deletion and duplication syndromes: rare association with pulmonary valve stenosis.
M Cristina Digilio, Laura Bernardini, Federica Consoli, Francesca R Lepri, M Grazia Giuffrida, Anwar Baban, Cecilia Surace, Rosangela Ferese, Adriano Angioni, Antonio Novelli,[...]. Eur J Med Genet 2013
24
12

Genomic and network patterns of schizophrenia genetic variation in human evolutionary accelerated regions.
Ke Xu, Eric E Schadt, Katherine S Pollard, Panos Roussos, Joel T Dudley. Mol Biol Evol 2015
46
6

Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation.
Nuala A O'Leary, Mathew W Wright, J Rodney Brister, Stacy Ciufo, Diana Haddad, Rich McVeigh, Bhanu Rajput, Barbara Robbertse, Brian Smith-White, Danso Ako-Adjei,[...]. Nucleic Acids Res 2016
4

Comprehensive mapping of long-range interactions reveals folding principles of the human genome.
Erez Lieberman-Aiden, Nynke L van Berkum, Louise Williams, Maxim Imakaev, Tobias Ragoczy, Agnes Telling, Ido Amit, Bryan R Lajoie, Peter J Sabo, Michael O Dorschner,[...]. Science 2009
4

Analysis of protein-coding genetic variation in 60,706 humans.
Monkol Lek, Konrad J Karczewski, Eric V Minikel, Kaitlin E Samocha, Eric Banks, Timothy Fennell, Anne H O'Donnell-Luria, James S Ware, Andrew J Hill, Beryl B Cummings,[...]. Nature 2016
4


dbSNP: the NCBI database of genetic variation.
S T Sherry, M H Ward, M Kholodov, J Baker, L Phan, E M Smigielski, K Sirotkin. Nucleic Acids Res 2001
4

Spatiotemporal gene expression trajectories reveal developmental hierarchies of the human cortex.
Tomasz J Nowakowski, Aparna Bhaduri, Alex A Pollen, Beatriz Alvarado, Mohammed A Mostajo-Radji, Elizabeth Di Lullo, Maximilian Haeussler, Carmen Sandoval-Espinosa, Siyuan John Liu, Dmitry Velmeshev,[...]. Science 2017
267
4

A Third Linear Association Between Olduvai (DUF1220) Copy Number and Severity of the Classic Symptoms of Inherited Autism.
Jonathan M Davis, Ilea Heft, Stephen W Scherer, James M Sikela. Am J Psychiatry 2019
6
50

Association of Rare Copy Number Variants With Risk of Depression.
Kimberley Marie Kendall, Elliott Rees, Matthew Bracher-Smith, Sophie Legge, Lucy Riglin, Stanley Zammit, Michael Conlon O'Donovan, Michael John Owen, Ian Jones, George Kirov,[...]. JAMA Psychiatry 2019
24
12


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.