A citation-based method for searching scientific literature

Ye Xu, Marina K Ayrapetov, Chang Xu, Ozge Gursoy-Yuzugullu, Yiduo Hu, Brendan D Price. Mol Cell 2012
Times Cited: 210







List of co-cited articles
1650 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity




The histone variant H2A.X is a regulator of the epithelial-mesenchymal transition.
Urbain Weyemi, Christophe E Redon, Rohini Choudhuri, Towqir Aziz, Daisuke Maeda, Myriem Boufraqech, Palak R Parekh, Taresh K Sethi, Manjula Kasoji, Natalie Abrams,[...]. Nat Commun 2016
48
14

Structural characterization of the histone variant macroH2A.
Srinivas Chakravarthy, Sampath Kumar Y Gundimella, Cecile Caron, Pierre-Yves Perche, John R Pehrson, Saadi Khochbin, Karolin Luger. Mol Cell Biol 2005
127
7

A novel ubiquitin mark at the N-terminal tail of histone H2As targeted by RNF168 ubiquitin ligase.
Marco Gatti, Sabrina Pinato, Elena Maspero, Paolo Soffientini, Simona Polo, Lorenza Penengo. Cell Cycle 2012
118
7

A combination of H2A.Z and H4 acetylation recruits Brd2 to chromatin during transcriptional activation.
Ryan Draker, Marlee K Ng, Elizabeth Sarcinella, Vladimir Ignatchenko, Thomas Kislinger, Peter Cheung. PLoS Genet 2012
67
10

Histone variants--ancient wrap artists of the epigenome.
Paul B Talbert, Steven Henikoff. Nat Rev Mol Cell Biol 2010
534
7

The chromatin remodeler p400 ATPase facilitates Rad51-mediated repair of DNA double-strand breaks.
Céline Courilleau, Catherine Chailleux, Alain Jauneau, Fanny Grimal, Sébastien Briois, Elisa Boutet-Robinet, François Boudsocq, Didier Trouche, Yvan Canitrot. J Cell Biol 2012
51
13


PARP1-dependent recruitment of KDM4D histone demethylase to DNA damage sites promotes double-strand break repair.
Hanan Khoury-Haddad, Noga Guttmann-Raviv, Inbal Ipenberg, David Huggins, Anand D Jeyasekharan, Nabieh Ayoub. Proc Natl Acad Sci U S A 2014
93
7


Roles of ATM and NBS1 in chromatin structure modulation and DNA double-strand break repair.
Elijahu Berkovich, Raymond J Monnat, Michael B Kastan. Nat Cell Biol 2007
355
7

H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions.
Chunyuan Jin, Chongzhi Zang, Gang Wei, Kairong Cui, Weiqun Peng, Keji Zhao, Gary Felsenfeld. Nat Genet 2009
548
7

RAP80 targets BRCA1 to specific ubiquitin structures at DNA damage sites.
Bijan Sobhian, Genze Shao, Dana R Lilli, Aedín C Culhane, Lisa A Moreau, Bing Xia, David M Livingston, Roger A Greenberg. Science 2007
527
7

The euchromatic and heterochromatic landscapes are shaped by antagonizing effects of transcription on H2A.Z deposition.
Sara Hardy, Pierre-Etienne Jacques, Nicolas Gévry, Audrey Forest, Marie-Eve Fortin, Liette Laflamme, Luc Gaudreau, François Robert. PLoS Genet 2009
97
7


Acetylated lysine 56 on histone H3 drives chromatin assembly after repair and signals for the completion of repair.
Chin-Chuan Chen, Joshua J Carson, Jason Feser, Beth Tamburini, Susan Zabaronick, Jeffrey Linger, Jessica K Tyler. Cell 2008
314
7


Histone variant H2A.J accumulates in senescent cells and promotes inflammatory gene expression.
Kévin Contrepois, Clément Coudereau, Bérénice A Benayoun, Nadine Schuler, Pierre-François Roux, Oliver Bischof, Régis Courbeyrette, Cyril Carvalho, Jean-Yves Thuret, Zhihai Ma,[...]. Nat Commun 2017
84
8

Replication-Coupled Dilution of H4K20me2 Guides 53BP1 to Pre-replicative Chromatin.
Stefania Pellegrino, Jone Michelena, Federico Teloni, Ralph Imhof, Matthias Altmeyer. Cell Rep 2017
73
9

SETDB1, HP1 and SUV39 promote repositioning of 53BP1 to extend resection during homologous recombination in G2 cells.
Meryem Alagoz, Yoko Katsuki, Hideaki Ogiwara, Tomoo Ogi, Atsushi Shibata, Andreas Kakarougkas, Penny Jeggo. Nucleic Acids Res 2015
54
12

FACT-mediated exchange of histone variant H2AX regulated by phosphorylation of H2AX and ADP-ribosylation of Spt16.
Kyu Heo, Hyunjung Kim, Si Ho Choi, Jongkyu Choi, Kyunghwan Kim, Jiafeng Gu, Michael R Lieber, Allen S Yang, Woojin An. Mol Cell 2008
179
7

New histone incorporation marks sites of UV repair in human cells.
Sophie E Polo, Danièle Roche, Geneviève Almouzni. Cell 2006
188
7

Double-strand break end resection and repair pathway choice.
Lorraine S Symington, Jean Gautier. Annu Rev Genet 2011
960
7

Sae2, Exo1 and Sgs1 collaborate in DNA double-strand break processing.
Eleni P Mimitou, Lorraine S Symington. Nature 2008
740
7

A role for the Tip60 histone acetyltransferase in the acetylation and activation of ATM.
Yingli Sun, Xiaofeng Jiang, Shujuan Chen, Norvin Fernandes, Brendan D Price. Proc Natl Acad Sci U S A 2005
524
7

Activation of DNA damage response signaling by condensed chromatin.
Rebecca C Burgess, Bharat Burman, Michael J Kruhlak, Tom Misteli. Cell Rep 2014
120
7

A histone H3K36 chromatin switch coordinates DNA double-strand break repair pathway choice.
Chen-Chun Pai, Rachel S Deegan, Lakxmi Subramanian, Csenge Gal, Sovan Sarkar, Elizabeth J Blaikley, Carol Walker, Lydia Hulme, Eric Bernhard, Sandra Codlin,[...]. Nat Commun 2014
100
7

Nucleosome-like, Single-stranded DNA (ssDNA)-Histone Octamer Complexes and the Implication for DNA Double Strand Break Repair.
Nicholas L Adkins, Sarah G Swygert, Parminder Kaur, Hengyao Niu, Sergei A Grigoryev, Patrick Sung, Hong Wang, Craig L Peterson. J Biol Chem 2017
25
28



A role for Saccharomyces cerevisiae histone H2A in DNA repair.
J A Downs, N F Lowndes, S P Jackson. Nature 2000
498
7

PARP1-dependent recruitment of the FBXL10-RNF68-RNF2 ubiquitin ligase to sites of DNA damage controls H2A.Z loading.
Gergely Rona, Domenico Roberti, Yandong Yin, Julia K Pagan, Harrison Homer, Elizabeth Sassani, Andras Zeke, Luca Busino, Eli Rothenberg, Michele Pagano. Elife 2018
25
28

RNF8- and RNF168-dependent degradation of KDM4A/JMJD2A triggers 53BP1 recruitment to DNA damage sites.
Frédérick A Mallette, Francesca Mattiroli, Gaofeng Cui, Leah C Young, Michael J Hendzel, Georges Mer, Titia K Sixma, Stéphane Richard. EMBO J 2012
248
7

Nucleosomes are context-specific, H2A.Z-modulated barriers to RNA polymerase.
Christopher M Weber, Srinivas Ramachandran, Steven Henikoff. Mol Cell 2014
228
7

Characterization of the histone H2A.Z-1 and H2A.Z-2 isoforms in vertebrates.
Deanna Dryhurst, Toyotaka Ishibashi, Kristie L Rose, José M Eirín-López, Darin McDonald, Begonia Silva-Moreno, Nik Veldhoen, Caren C Helbing, Michael J Hendzel, Jeffrey Shabanowitz,[...]. BMC Biol 2009
73
9

Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks.
Daniel Zilberman, Devin Coleman-Derr, Tracy Ballinger, Steven Henikoff. Nature 2008
381
7

Targeting of the Fun30 nucleosome remodeller by the Dpb11 scaffold facilitates cell cycle-regulated DNA end resection.
Susanne Cs Bantele, Pedro Ferreira, Dalia Gritenaite, Dominik Boos, Boris Pfander. Elife 2017
33
21

DNA repair factor APLF is a histone chaperone.
Pawan Vinod Mehrotra, Dragana Ahel, Daniel P Ryan, Ria Weston, Nicola Wiechens, Rolf Kraehenbuehl, Tom Owen-Hughes, Ivan Ahel. Mol Cell 2011
112
7

The tale of a tail: histone H4 acetylation and the repair of DNA breaks.
Surbhi Dhar, Ozge Gursoy-Yuzugullu, Ramya Parasuram, Brendan D Price. Philos Trans R Soc Lond B Biol Sci 2017
51
13

Histone H2A variants H2AX and H2AZ.
Christophe Redon, Duane Pilch, Emmy Rogakou, Olga Sedelnikova, Kenneth Newrock, William Bonner. Curr Opin Genet Dev 2002
558
6

SETD6 monomethylates H2AZ on lysine 7 and is required for the maintenance of embryonic stem cell self-renewal.
Olivier Binda, Ana Sevilla, Gary LeRoy, Ihor R Lemischka, Benjamin A Garcia, Stéphane Richard. Epigenetics 2013
43
13

A critical role for histone H2AX in recruitment of repair factors to nuclear foci after DNA damage.
T T Paull, E P Rogakou, V Yamazaki, C U Kirchgessner, M Gellert, W M Bonner. Curr Biol 2000
6

Swc2 is a widely conserved H2AZ-binding module essential for ATP-dependent histone exchange.
Wei-Hua Wu, Samar Alami, Edward Luk, Chwen-Huey Wu, Subhojit Sen, Gaku Mizuguchi, Debbie Wei, Carl Wu. Nat Struct Mol Biol 2005
183
6

Acetylated histone variant H2A.Z is involved in the activation of neo-enhancers in prostate cancer.
Fátima Valdés-Mora, Cathryn M Gould, Yolanda Colino-Sanguino, Wenjia Qu, Jenny Z Song, Kylie M Taylor, Fabian A Buske, Aaron L Statham, Shalima S Nair, Nicola J Armstrong,[...]. Nat Commun 2017
48
12

Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification.
Minjia Tan, Hao Luo, Sangkyu Lee, Fulai Jin, Jeong Soo Yang, Emilie Montellier, Thierry Buchou, Zhongyi Cheng, Sophie Rousseaux, Nisha Rajagopal,[...]. Cell 2011
6


Systematic identification of functional residues in mammalian histone H2AX.
Wei-Ta Chen, Amir Alpert, Courtney Leiter, Fade Gong, Stephen P Jackson, Kyle M Miller. Mol Cell Biol 2013
46
13

Crosstalk between histone modifications during the DNA damage response.
Haico van Attikum, Susan M Gasser. Trends Cell Biol 2009
385
6



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.