A citation-based method for searching scientific literature

David Clynes, Clare Jelinska, Barbara Xella, Helena Ayyub, Caroline Scott, Matthew Mitson, Stephen Taylor, Douglas R Higgs, Richard J Gibbons. Nat Commun 2015
Times Cited: 128







List of co-cited articles
1399 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


ATRX binds to atypical chromatin domains at the 3' exons of zinc finger genes to preserve H3K9me3 enrichment.
David Valle-García, Zulekha A Qadeer, Domhnall S McHugh, Flávia G Ghiraldini, Asif H Chowdhury, Dan Hasson, Michael A Dyer, Félix Recillas-Targa, Emily Bernstein. Epigenetics 2016
26
23

Mutations in the chromatin-associated protein ATRX.
Richard J Gibbons, Takahito Wada, Christopher A Fisher, Nicola Malik, Matthew J Mitson, David P Steensma, Alan Fryer, David R Goudie, Ian D Krantz, Joanne Traeger-Synodinos. Hum Mutat 2008
103
6

Reduced H3K27me3 and DNA hypomethylation are major drivers of gene expression in K27M mutant pediatric high-grade gliomas.
Sebastian Bender, Yujie Tang, Anders M Lindroth, Volker Hovestadt, David T W Jones, Marcel Kool, Marc Zapatka, Paul A Northcott, Dominik Sturm, Wei Wang,[...]. Cancer Cell 2013
387
6


Daxx, a novel Fas-binding protein that activates JNK and apoptosis.
X Yang, R Khosravi-Far, H Y Chang, D Baltimore. Cell 1997
786
6

IDH1 mutation is sufficient to establish the glioma hypermethylator phenotype.
Sevin Turcan, Daniel Rohle, Anuj Goenka, Logan A Walsh, Fang Fang, Emrullah Yilmaz, Carl Campos, Armida W M Fabius, Chao Lu, Patrick S Ward,[...]. Nature 2012
6

Telomeric recombination in mismatch repair deficient human colon cancer cells after telomerase inhibition.
Oliver E Bechter, Ying Zou, William Walker, Woodring E Wright, Jerry W Shay. Cancer Res 2004
151
6


R loops: new modulators of genome dynamics and function.
José M Santos-Pereira, Andrés Aguilera. Nat Rev Genet 2015
357
6

TERRA and hnRNPA1 orchestrate an RPA-to-POT1 switch on telomeric single-stranded DNA.
Rachel Litman Flynn, Richard C Centore, Roderick J O'Sullivan, Rekha Rai, Alice Tse, Zhou Songyang, Sandy Chang, Jan Karlseder, Lee Zou. Nature 2011
221
6


Functional characterization of the TERRA transcriptome at damaged telomeres.
Antonio Porro, Sascha Feuerhahn, Julien Delafontaine, Harold Riethman, Jacques Rougemont, Joachim Lingner. Nat Commun 2014
130
6

Hira-dependent histone H3.3 deposition facilitates PRC2 recruitment at developmental loci in ES cells.
Laura A Banaszynski, Duancheng Wen, Scott Dewell, Sarah J Whitcomb, Mingyan Lin, Nichole Diaz, Simon J Elsässer, Ariane Chapgier, Aaron D Goldberg, Eli Canaani,[...]. Cell 2013
156
6

Crystal structure of the nucleosome core particle at 2.8 A resolution.
K Luger, A W Mäder, R K Richmond, D F Sargent, T J Richmond. Nature 1997
6


Intratumoral diversity of telomere length in individual neuroblastoma tumors.
Annalisa Pezzolo, Angela Pistorio, Claudio Gambini, Riccardo Haupt, Manuela Ferraro, Giovanni Erminio, Bruno De Bernardi, Alberto Garaventa, Vito Pistoia. Oncotarget 2015
27
22

R loops: from transcription byproducts to threats to genome stability.
Andrés Aguilera, Tatiana García-Muse. Mol Cell 2012
555
6

Intracellular transcription of G-rich DNAs induces formation of G-loops, novel structures containing G4 DNA.
Michelle L Duquette, Priya Handa, Jack A Vincent, Andrew F Taylor, Nancy Maizels. Genes Dev 2004
361
6

Coexistence of alternative lengthening of telomeres and telomerase in hTERT-transfected GM847 cells.
K Perrem, L M Colgin, A A Neumann, T R Yeager, R R Reddel. Mol Cell Biol 2001
192
6

FANCD2 limits BLM-dependent telomere instability in the alternative lengthening of telomeres pathway.
Heather Root, Andrew Larsen, Martin Komosa, Fakhriya Al-Azri, Ren Li, David P Bazett-Jones, M Stephen Meyn. Hum Mol Genet 2016
27
22

TERRA RNA binding to TRF2 facilitates heterochromatin formation and ORC recruitment at telomeres.
Zhong Deng, Julie Norseen, Andreas Wiedmer, Harold Riethman, Paul M Lieberman. Mol Cell 2009
345
6

Mammalian RAD52 Functions in Break-Induced Replication Repair of Collapsed DNA Replication Forks.
Sotirios K Sotiriou, Irene Kamileri, Natalia Lugli, Konstantinos Evangelou, Caterina Da-Ré, Florian Huber, Laura Padayachy, Sebastien Tardy, Noemie L Nicati, Samia Barriot,[...]. Mol Cell 2016
142
6

Break-induced DNA replication.
Ranjith P Anand, Susan T Lovett, James E Haber. Cold Spring Harb Perspect Biol 2013
141
6

RAD52 Facilitates Mitotic DNA Synthesis Following Replication Stress.
Rahul Bhowmick, Sheroy Minocherhomji, Ian D Hickson. Mol Cell 2016
164
6

Break-induced replication repair of damaged forks induces genomic duplications in human cells.
Lorenzo Costantino, Sotirios K Sotiriou, Juha K Rantala, Simon Magin, Emil Mladenov, Thomas Helleday, James E Haber, George Iliakis, Olli P Kallioniemi, Thanos D Halazonetis. Science 2014
265
6

ATRX is a regulator of therapy induced senescence in human cells.
Marta Kovatcheva, Will Liao, Mary E Klein, Nicolas Robine, Heather Geiger, Aimee M Crago, Mark A Dickson, William D Tap, Samuel Singer, Andrew Koff. Nat Commun 2017
37
16

Targeting BRCA1 and BRCA2 Deficiencies with G-Quadruplex-Interacting Compounds.
Jutta Zimmer, Eliana M C Tacconi, Cecilia Folio, Sophie Badie, Manuela Porru, Kerstin Klare, Manuela Tumiati, Enni Markkanen, Swagata Halder, Anderson Ryan,[...]. Mol Cell 2016
102
6

The somatic genomic landscape of glioblastoma.
Cameron W Brennan, Roel G W Verhaak, Aaron McKenna, Benito Campos, Houtan Noushmehr, Sofie R Salama, Siyuan Zheng, Debyani Chakravarty, J Zachary Sanborn, Samuel H Berman,[...]. Cell 2013
6

Alternative lengthening of telomeres can be maintained by preferential elongation of lagging strands.
Jaewon Min, Woodring E Wright, Jerry W Shay. Nucleic Acids Res 2017
30
20

Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal.
Jianjiong Gao, Bülent Arman Aksoy, Ugur Dogrusoz, Gideon Dresdner, Benjamin Gross, S Onur Sumer, Yichao Sun, Anders Jacobsen, Rileen Sinha, Erik Larsson,[...]. Sci Signal 2013
6


High-throughput sequencing of DNA G-quadruplex structures in the human genome.
Vicki S Chambers, Giovanni Marsico, Jonathan M Boutell, Marco Di Antonio, Geoffrey P Smith, Shankar Balasubramanian. Nat Biotechnol 2015
498
6

Telomere end-binding proteins control the formation of G-quadruplex DNA structures in vivo.
Katrin Paeschke, Tomas Simonsson, Jan Postberg, Daniela Rhodes, Hans Joachim Lipps. Nat Struct Mol Biol 2005
403
6

Stabilization of quadruplex DNA perturbs telomere replication leading to the activation of an ATR-dependent ATM signaling pathway.
Angela Rizzo, Erica Salvati, Manuela Porru, Carmen D'Angelo, Malcolm F Stevens, Maurizio D'Incalci, Carlo Leonetti, Eric Gilson, Gabriella Zupi, Annamaria Biroccio. Nucleic Acids Res 2009
114
6

Ribosomal DNA copy loss and repeat instability in ATRX-mutated cancers.
Maheshi Udugama, Elaine Sanij, Hsiao P J Voon, Jinbae Son, Linda Hii, Jeremy D Henson, F Lyn Chan, Fiona T M Chang, Yumei Liu, Richard B Pearson,[...]. Proc Natl Acad Sci U S A 2018
37
16

Identification of a novel gene fusion in ALT positive osteosarcoma.
Emily Mason-Osann, Anqi Dai, Jess Floro, Ying Jie Lock, Matthew Reiss, Himabindu Gali, Adeline Matschulat, Adam Labadorf, Rachel Litman Flynn. Oncotarget 2018
14
42


Unusual telomeric DNAs in human telomerase-negative immortalized cells.
Akira Nabetani, Fuyuki Ishikawa. Mol Cell Biol 2009
77
7

Mammalian telomeres end in a large duplex loop.
J D Griffith, L Comeau, S Rosenfield, R M Stansel, A Bianchi, H Moss, T de Lange. Cell 1999
6

Alternative Lengthening of Telomeres: DNA Repair Pathways Converge.
Alexander P Sobinoff, Hilda A Pickett. Trends Genet 2017
68
8

Integrative genomic and transcriptomic analysis of leiomyosarcoma.
Priya Chudasama, Sadaf S Mughal, Mathijs A Sanders, Daniel Hübschmann, Inn Chung, Katharina I Deeg, Siao-Han Wong, Sophie Rabe, Mario Hlevnjak, Marc Zapatka,[...]. Nat Commun 2018
81
7

Synthetic lethality of cytolytic HSV-1 in cancer cells with ATRX and PML deficiency.
Mingqi Han, Christine E Napier, Sonja Frölich, Erdahl Teber, Ted Wong, Jane R Noble, Eugene H Y Choi, Roger D Everett, Anthony J Cesare, Roger R Reddel. J Cell Sci 2019
10
60

Epigenetic features of human telomeres.
María D Cubiles, Sonia Barroso, María I Vaquero-Sedas, Alicia Enguix, Andrés Aguilera, Miguel A Vega-Palas. Nucleic Acids Res 2018
40
15

Nuclear receptors regulate alternative lengthening of telomeres through a novel noncanonical FANCD2 pathway.
Mafei Xu, Jun Qin, Leiming Wang, Hui-Ju Lee, Chung-Yang Kao, Dan Liu, Zhou Songyang, Junjie Chen, Ming-Jer Tsai, Sophia Y Tsai. Sci Adv 2019
9
66

RAD52 and SLX4 act nonepistatically to ensure telomere stability during alternative telomere lengthening.
Priyanka Verma, Robert L Dilley, Tianpeng Zhang, Melina T Gyparaki, Yiwen Li, Roger A Greenberg. Genes Dev 2019
37
16

MYCN amplification and ATRX mutations are incompatible in neuroblastoma.
Maged Zeineldin, Sara Federico, Xiang Chen, Yiping Fan, Beisi Xu, Elizabeth Stewart, Xin Zhou, Jongrye Jeon, Lyra Griffiths, Rosa Nguyen,[...]. Nat Commun 2020
20
30

ATRX In-Frame Fusion Neuroblastoma Is Sensitive to EZH2 Inhibition via Modulation of Neuronal Gene Signatures.
Zulekha A Qadeer, David Valle-Garcia, Dan Hasson, Zhen Sun, April Cook, Christie Nguyen, Aroa Soriano, Anqi Ma, Lyra M Griffiths, Maged Zeineldin,[...]. Cancer Cell 2019
16
37

A DNA damage checkpoint response in telomere-initiated senescence.
Fabrizio d'Adda di Fagagna, Philip M Reaper, Lorena Clay-Farrace, Heike Fiegler, Philippa Carr, Thomas Von Zglinicki, Gabriele Saretzki, Nigel P Carter, Stephen P Jackson. Nature 2003
5

The Bloom syndrome helicase BLM interacts with TRF2 in ALT cells and promotes telomeric DNA synthesis.
Dimitrios J Stavropoulos, Paul S Bradshaw, Xiaobin Li, Ivan Pasic, Kevin Truong, Mitsuhiko Ikura, Mark Ungrin, M Stephen Meyn. Hum Mol Genet 2002
150
5

Cancer. Cancer and telomeres--an ALTernative to telomerase.
Jerry W Shay, Roger R Reddel, Woodring E Wright. Science 2012
82
6


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.