A citation-based method for searching scientific literature

Yan Xu, Takako Mizuno, Anusha Sridharan, Yina Du, Minzhe Guo, Jie Tang, Kathryn A Wikenheiser-Brokamp, Anne-Karina T Perl, Vincent A Funari, Jason J Gokey, Barry R Stripp, Jeffrey A Whitsett. JCI Insight 2016
Times Cited: 240







List of co-cited articles
1130 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Inhibition of Wnt/beta-catenin/CREB binding protein (CBP) signaling reverses pulmonary fibrosis.
William R Henderson, Emil Y Chi, Xin Ye, Cu Nguyen, Ying-tzang Tien, Beiyun Zhou, Zea Borok, Darryl A Knight, Michael Kahn. Proc Natl Acad Sci U S A 2010
325
5

The instructive extracellular matrix of the lung: basic composition and alterations in chronic lung disease.
Gerald Burgstaller, Bettina Oehrle, Michael Gerckens, Eric S White, Herbert B Schiller, Oliver Eickelberg. Eur Respir J 2017
130
5

Senolytics in idiopathic pulmonary fibrosis: Results from a first-in-human, open-label, pilot study.
Jamie N Justice, Anoop M Nambiar, Tamar Tchkonia, Nathan K LeBrasseur, Rodolfo Pascual, Shahrukh K Hashmi, Larissa Prata, Michal M Masternak, Stephen B Kritchevsky, Nicolas Musi,[...]. EBioMedicine 2019
284
5

Defining the Activated Fibroblast Population in Lung Fibrosis Using Single-Cell Sequencing.
Rebecca Peyser, Scott MacDonnell, Yinglin Gao, Luis Cheng, Yong Kim, Theodore Kaplan, Qin Ruan, Yi Wei, Min Ni, Christina Adler,[...]. Am J Respir Cell Mol Biol 2019
41
12


Generation of alveolar epithelial spheroids via isolated progenitor cells from human pluripotent stem cells.
Shimpei Gotoh, Isao Ito, Tadao Nagasaki, Yuki Yamamoto, Satoshi Konishi, Yohei Korogi, Hisako Matsumoto, Shigeo Muro, Toyohiro Hirai, Michinori Funato,[...]. Stem Cell Reports 2014
105
5

Abnormal re-epithelialization and lung remodeling in idiopathic pulmonary fibrosis: the role of deltaN-p63.
Marco Chilosi, Venerino Poletti, Bruno Murer, Maurizio Lestani, Alessandra Cancellieri, Licia Montagna, Paola Piccoli, Giulia Cangi, Gianpietro Semenzato, Claudio Doglioni. Lab Invest 2002
148
5

Novel dynamics of human mucociliary differentiation revealed by single-cell RNA sequencing of nasal epithelial cultures.
Sandra Ruiz García, Marie Deprez, Kevin Lebrigand, Amélie Cavard, Agnès Paquet, Marie-Jeanne Arguel, Virginie Magnone, Marin Truchi, Ignacio Caballero, Sylvie Leroy,[...]. Development 2019
62
8

Efficient generation of lung and airway epithelial cells from human pluripotent stem cells.
Sarah X L Huang, Mohammad Naimul Islam, John O'Neill, Zheng Hu, Yong-Guang Yang, Ya-Wen Chen, Melanie Mumau, Michael D Green, Gordana Vunjak-Novakovic, Jahar Bhattacharya,[...]. Nat Biotechnol 2014
304
5

Regeneration of functional alveoli by adult human SOX9+ airway basal cell transplantation.
Qiwang Ma, Yu Ma, Xiaotian Dai, Tao Ren, Yingjie Fu, Wenbin Liu, Yufei Han, Yingchuan Wu, Yu Cheng, Ting Zhang,[...]. Protein Cell 2018
34
14

Mechanisms of alveolar epithelial injury, repair, and fibrosis.
Rachel C Chambers, Paul F Mercer. Ann Am Thorac Soc 2015
79
6

Extracellular matrix in lung development, homeostasis and disease.
Yong Zhou, Jeffrey C Horowitz, Alexandra Naba, Namasivayam Ambalavanan, Kamran Atabai, Jenna Balestrini, Peter B Bitterman, Richard A Corley, Bi-Sen Ding, Adam J Engler,[...]. Matrix Biol 2018
78
6

Two-Way Conversion between Lipogenic and Myogenic Fibroblastic Phenotypes Marks the Progression and Resolution of Lung Fibrosis.
Elie El Agha, Alena Moiseenko, Vahid Kheirollahi, Stijn De Langhe, Slaven Crnkovic, Grazyna Kwapiszewska, Marten Szibor, Djuro Kosanovic, Felix Schwind, Ralph T Schermuly,[...]. Cell Stem Cell 2017
41
12

Airway basal stem cells: a perspective on their roles in epithelial homeostasis and remodeling.
Jason R Rock, Scott H Randell, Brigid L M Hogan. Dis Model Mech 2010
382
5


Accelerated epithelial cell senescence in IPF and the inhibitory role of SIRT6 in TGF-β-induced senescence of human bronchial epithelial cells.
Shunsuke Minagawa, Jun Araya, Takanori Numata, Satoko Nojiri, Hiromichi Hara, Yoko Yumino, Makoto Kawaishi, Makoto Odaka, Toshiaki Morikawa, Stephen L Nishimura,[...]. Am J Physiol Lung Cell Mol Physiol 2011
180
5

Collagen-producing lung cell atlas identifies multiple subsets with distinct localization and relevance to fibrosis.
Tatsuya Tsukui, Kai-Hui Sun, Joseph B Wetter, John R Wilson-Kanamori, Lisa A Hazelwood, Neil C Henderson, Taylor S Adams, Jonas C Schupp, Sergio D Poli, Ivan O Rosas,[...]. Nat Commun 2020
53
9

Developmental pathways in the pathogenesis of lung fibrosis.
Diptiman Chanda, Eva Otoupalova, Samuel R Smith, Thomas Volckaert, Stijn P De Langhe, Victor J Thannickal. Mol Aspects Med 2019
76
6

Persistence of a regeneration-associated, transitional alveolar epithelial cell state in pulmonary fibrosis.
Yoshihiko Kobayashi, Aleksandra Tata, Arvind Konkimalla, Hiroaki Katsura, Rebecca F Lee, Jianhong Ou, Nicholas E Banovich, Jonathan A Kropski, Purushothama Rao Tata. Nat Cell Biol 2020
44
11

Pathogenesis of idiopathic pulmonary fibrosis.
Paul J Wolters, Harold R Collard, Kirk D Jones. Annu Rev Pathol 2014
354
5

LungMAP: The Molecular Atlas of Lung Development Program.
Maryanne E Ardini-Poleske, Robert F Clark, Charles Ansong, James P Carson, Richard A Corley, Gail H Deutsch, James S Hagood, Naftali Kaminski, Thomas J Mariani, Steven S Potter,[...]. Am J Physiol Lung Cell Mol Physiol 2017
70
7

Dissecting the cellular specificity of smoking effects and reconstructing lineages in the human airway epithelium.
Katherine C Goldfarbmuren, Nathan D Jackson, Satria P Sajuthi, Nathan Dyjack, Katie S Li, Cydney L Rios, Elizabeth G Plender, Michael T Montgomery, Jamie L Everman, Preston E Bratcher,[...]. Nat Commun 2020
30
16

The Cellular and Physiological Basis for Lung Repair and Regeneration: Past, Present, and Future.
Maria C Basil, Jeremy Katzen, Anna E Engler, Minzhe Guo, Michael J Herriges, Jaymin J Kathiriya, Rebecca Windmueller, Alexandra B Ysasi, William J Zacharias, Hal A Chapman,[...]. Cell Stem Cell 2020
68
7

Well-differentiated human airway epithelial cell cultures.
M Leslie Fulcher, Sherif Gabriel, Kimberlie A Burns, James R Yankaskas, Scott H Randell. Methods Mol Med 2005
393
4

limma powers differential expression analyses for RNA-sequencing and microarray studies.
Matthew E Ritchie, Belinda Phipson, Di Wu, Yifang Hu, Charity W Law, Wei Shi, Gordon K Smyth. Nucleic Acids Res 2015
4

RNA-sequencing across three matched tissues reveals shared and tissue-specific gene expression and pathway signatures of COPD.
Jarrett D Morrow, Robert P Chase, Margaret M Parker, Kimberly Glass, Minseok Seo, Miguel Divo, Caroline A Owen, Peter Castaldi, Dawn L DeMeo, Edwin K Silverman,[...]. Respir Res 2019
16
25

Genetic loci associated with chronic obstructive pulmonary disease overlap with loci for lung function and pulmonary fibrosis.
Brian D Hobbs, Kim de Jong, Maxime Lamontagne, Yohan Bossé, Nick Shrine, María Soler Artigas, Louise V Wain, Ian P Hall, Victoria E Jackson, Annah B Wyss,[...]. Nat Genet 2017
159
4

Short telomeres are a risk factor for idiopathic pulmonary fibrosis.
Jonathan K Alder, Julian J-L Chen, Lisa Lancaster, Sonye Danoff, Shu-chih Su, Joy D Cogan, Irma Vulto, Mingyi Xie, Xiaodong Qi, Rubin M Tuder,[...]. Proc Natl Acad Sci U S A 2008
459
4

miR-34 miRNAs Regulate Cellular Senescence in Type II Alveolar Epithelial Cells of Patients with Idiopathic Pulmonary Fibrosis.
Supparerk Disayabutr, Eun Kyung Kim, Seung-Ick Cha, Gary Green, Ram P Naikawadi, Kirk D Jones, Jeffrey A Golden, Aaron Schroeder, Michael A Matthay, Jasleen Kukreja,[...]. PLoS One 2016
65
6

Serpine 1 induces alveolar type II cell senescence through activating p53-p21-Rb pathway in fibrotic lung disease.
Chunsun Jiang, Gang Liu, Tracy Luckhardt, Veena Antony, Yong Zhou, A Brent Carter, Victor J Thannickal, Rui-Ming Liu. Aging Cell 2017
63
6

PINK1 attenuates mtDNA release in alveolar epithelial cells and TLR9 mediated profibrotic responses.
Marta Bueno, Daniel Zank, Ivette Buendia-Roldán, Kaitlin Fiedler, Brenton G Mays, Diana Alvarez, John Sembrat, Brian Kimball, Jordan K Bullock, James L Martin,[...]. PLoS One 2019
27
14


Short telomere length in IPF lung associates with fibrotic lesions and predicts survival.
Reinier Snetselaar, Aernoud A van Batenburg, Matthijs F M van Oosterhout, Karin M Kazemier, Suzan M Roothaan, Ton Peeters, Joanne J van der Vis, Roel Goldschmeding, Jan C Grutters, Coline H M van Moorsel. PLoS One 2017
46
8

Loss-of-function mutations in the RNA biogenesis factor NAF1 predispose to pulmonary fibrosis-emphysema.
Susan E Stanley, Dustin L Gable, Christa L Wagner, Thomas M Carlile, Vidya Sagar Hanumanthu, Joshua D Podlevsky, Sara E Khalil, Amy E DeZern, Maria F Rojas-Duran, Carolyn D Applegate,[...]. Sci Transl Med 2016
99
4

Matrix metalloproteinase (MMP)-1 induces lung alveolar epithelial cell migration and proliferation, protects from apoptosis, and represses mitochondrial oxygen consumption.
Iliana Herrera, José Cisneros, Mariel Maldonado, Remedios Ramírez, Blanca Ortiz-Quintero, Elena Anso, Navdeep S Chandel, Moisés Selman, Annie Pardo. J Biol Chem 2013
64
6

Modeling of Fibrotic Lung Disease Using 3D Organoids Derived from Human Pluripotent Stem Cells.
Alexandros Strikoudis, Anna Cieślak, Lucas Loffredo, Ya-Wen Chen, Nina Patel, Anjali Saqi, David J Lederer, Hans-Willem Snoeck. Cell Rep 2019
60
6

MAPK-Mediated YAP Activation Controls Mechanical-Tension-Induced Pulmonary Alveolar Regeneration.
Zhe Liu, Huijuan Wu, Kewu Jiang, Yanjie Wang, Wenjing Zhang, Qiqi Chu, Juan Li, Huanwei Huang, Tao Cai, Hongbin Ji,[...]. Cell Rep 2016
82
4

Is idiopathic pulmonary fibrosis an environmental disease?
Varsha S Taskar, David B Coultas. Proc Am Thorac Soc 2006
188
4


Targeting of αv integrin identifies a core molecular pathway that regulates fibrosis in several organs.
Neil C Henderson, Thomas D Arnold, Yoshio Katamura, Marilyn M Giacomini, Juan D Rodriguez, Joseph H McCarty, Antonella Pellicoro, Elisabeth Raschperger, Christer Betsholtz, Peter G Ruminski,[...]. Nat Med 2013
461
4

Mitochondrial calcium uniporter regulates PGC-1α expression to mediate metabolic reprogramming in pulmonary fibrosis.
Linlin Gu, Jennifer L Larson Casey, Shaida A Andrabi, Jun Hee Lee, Selene Meza-Perez, Troy D Randall, A Brent Carter. Redox Biol 2019
19
21

Metformin reverses established lung fibrosis in a bleomycin model.
Sunad Rangarajan, Nathaniel B Bone, Anna A Zmijewska, Shaoning Jiang, Dae Won Park, Karen Bernard, Morgan L Locy, Saranya Ravi, Jessy Deshane, Roslyn B Mannon,[...]. Nat Med 2018
175
4

PGC1α repression in IPF fibroblasts drives a pathologic metabolic, secretory and fibrogenic state.
Nunzia Caporarello, Jeffrey A Meridew, Dakota L Jones, Qi Tan, Andrew J Haak, Kyoung M Choi, Logan J Manlove, Y S Prakash, Daniel J Tschumperlin, Giovanni Ligresti. Thorax 2019
26
15

NOX4 modulates macrophage phenotype and mitochondrial biogenesis in asbestosis.
Chao He, Jennifer L Larson-Casey, Dana Davis, Vidya Sagar Hanumanthu, Ana Leda F Longhini, Victor J Thannickal, Linlin Gu, A Brent Carter. JCI Insight 2019
14
28

Autophagy in idiopathic pulmonary fibrosis.
Avignat S Patel, Ling Lin, Alexander Geyer, Jeffrey A Haspel, Chang Hyeok An, Jiaofei Cao, Ivan O Rosas, Danielle Morse. PLoS One 2012
226
4

TLR9 differentiates rapidly from slowly progressing forms of idiopathic pulmonary fibrosis.
Glenda Trujillo, Alessia Meneghin, Kevin R Flaherty, Lynette M Sholl, Jeffrey L Myers, Ella A Kazerooni, Barry H Gross, Sameer R Oak, Ana Lucia Coelho, Holly Evanoff,[...]. Sci Transl Med 2010
101
4

Involvement of PARK2-Mediated Mitophagy in Idiopathic Pulmonary Fibrosis Pathogenesis.
Kenji Kobayashi, Jun Araya, Shunsuke Minagawa, Hiromichi Hara, Nayuta Saito, Tsukasa Kadota, Nahoko Sato, Masahiro Yoshida, Kazuya Tsubouchi, Yusuke Kurita,[...]. J Immunol 2016
62
6

Alveolar macrophages develop from fetal monocytes that differentiate into long-lived cells in the first week of life via GM-CSF.
Martin Guilliams, Ismé De Kleer, Sandrine Henri, Sijranke Post, Leen Vanhoutte, Sofie De Prijck, Kim Deswarte, Bernard Malissen, Hamida Hammad, Bart N Lambrecht. J Exp Med 2013
598
4

Ly6Chi monocytes direct alternatively activated profibrotic macrophage regulation of lung fibrosis.
Michael A Gibbons, Alison C MacKinnon, Prakash Ramachandran, Kevin Dhaliwal, Rodger Duffin, Alexander T Phythian-Adams, Nico van Rooijen, Christopher Haslett, Sarah E Howie, A John Simpson,[...]. Am J Respir Crit Care Med 2011
257
4



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.