A citation-based method for searching scientific literature

Maxim V C Greenberg, Deborah Bourc'his. Nat Rev Mol Cell Biol 2019
Times Cited: 378







List of co-cited articles
831 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Preparation of reduced representation bisulfite sequencing libraries for genome-scale DNA methylation profiling.
Hongcang Gu, Zachary D Smith, Christoph Bock, Patrick Boyle, Andreas Gnirke, Alexander Meissner. Nat Protoc 2011
412
3

Quantitative comparison of genome-wide DNA methylation mapping technologies.
Christoph Bock, Eleni M Tomazou, Arie B Brinkman, Fabian Müller, Femke Simmer, Hongcang Gu, Natalie Jäger, Andreas Gnirke, Hendrik G Stunnenberg, Alexander Meissner. Nat Biotechnol 2010
395
3

Long-range enhancer-promoter contacts in gene expression control.
Stefan Schoenfelder, Peter Fraser. Nat Rev Genet 2019
225
3


Role of Tet proteins in enhancer activity and telomere elongation.
Falong Lu, Yuting Liu, Lan Jiang, Shinpei Yamaguchi, Yi Zhang. Genes Dev 2014
156
3

DNA methylation disruption reshapes the hematopoietic differentiation landscape.
Franco Izzo, Stanley C Lee, Asaf Poran, Ronan Chaligne, Federico Gaiti, Baptiste Gross, Rekha R Murali, Sunil D Deochand, Chelston Ang, Philippa Wyndham Jones,[...]. Nat Genet 2020
46
6

Maintenance of self-renewal ability of mouse embryonic stem cells in the absence of DNA methyltransferases Dnmt1, Dnmt3a and Dnmt3b.
Akiko Tsumura, Tomohiro Hayakawa, Yuichi Kumaki, Shin-ichiro Takebayashi, Morito Sakaue, Chisa Matsuoka, Kunitada Shimotohno, Fuyuki Ishikawa, En Li, Hiroki R Ueda,[...]. Genes Cells 2006
367
3

Transcription Factors Drive Tet2-Mediated Enhancer Demethylation to Reprogram Cell Fate.
Jose Luis Sardina, Samuel Collombet, Tian V Tian, Antonio Gómez, Bruno Di Stefano, Clara Berenguer, Justin Brumbaugh, Ralph Stadhouders, Carolina Segura-Morales, Marta Gut,[...]. Cell Stem Cell 2018
70
4

TET1 and hydroxymethylcytosine in transcription and DNA methylation fidelity.
Kristine Williams, Jesper Christensen, Marianne Terndrup Pedersen, Jens V Johansen, Paul A C Cloos, Juri Rappsilber, Kristian Helin. Nature 2011
690
3

Structural basis for recognition of H3K4 methylation status by the DNA methyltransferase 3A ATRX-DNMT3-DNMT3L domain.
Junji Otani, Toshiyuki Nankumo, Kyohei Arita, Susumu Inamoto, Mariko Ariyoshi, Masahiro Shirakawa. EMBO Rep 2009
234
3

scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells.
Stephen J Clark, Ricard Argelaguet, Chantriolnt-Andreas Kapourani, Thomas M Stubbs, Heather J Lee, Celia Alda-Catalinas, Felix Krueger, Guido Sanguinetti, Gavin Kelsey, John C Marioni,[...]. Nat Commun 2018
208
3


Dynamic Enhancer DNA Methylation as Basis for Transcriptional and Cellular Heterogeneity of ESCs.
Yuelin Song, Patrick R van den Berg, Styliani Markoulaki, Frank Soldner, Alessandra Dall'Agnese, Jonathan E Henninger, Jesse Drotar, Nicholas Rosenau, Malkiel A Cohen, Richard A Young,[...]. Mol Cell 2019
26
11

Reprogramming the methylome: erasing memory and creating diversity.
Heather J Lee, Timothy A Hore, Wolf Reik. Cell Stem Cell 2014
188
3

Single-cell DNA methylome sequencing and bioinformatic inference of epigenomic cell-state dynamics.
Matthias Farlik, Nathan C Sheffield, Angelo Nuzzo, Paul Datlinger, Andreas Schönegger, Johanna Klughammer, Christoph Bock. Cell Rep 2015
230
3

The dynamics of genome-wide DNA methylation reprogramming in mouse primordial germ cells.
Stefanie Seisenberger, Simon Andrews, Felix Krueger, Julia Arand, Jörn Walter, Fátima Santos, Christian Popp, Bernard Thienpont, Wendy Dean, Wolf Reik. Mol Cell 2012
549
3

Genome-Scale Oscillations in DNA Methylation during Exit from Pluripotency.
Steffen Rulands, Heather J Lee, Stephen J Clark, Christof Angermueller, Sébastien A Smallwood, Felix Krueger, Hisham Mohammed, Wendy Dean, Jennifer Nichols, Peter Rugg-Gunn,[...]. Cell Syst 2018
34
8

Nucleosome structure and dynamics are coming of age.
Keda Zhou, Guillaume Gaullier, Karolin Luger. Nat Struct Mol Biol 2019
85
3

Implication of sperm RNAs in transgenerational inheritance of the effects of early trauma in mice.
Katharina Gapp, Ali Jawaid, Peter Sarkies, Johannes Bohacek, Pawel Pelczar, Julien Prados, Laurent Farinelli, Eric Miska, Isabelle M Mansuy. Nat Neurosci 2014
576
3

Epigenetic predictor of age.
Sven Bocklandt, Wen Lin, Mary E Sehl, Francisco J Sánchez, Janet S Sinsheimer, Steve Horvath, Eric Vilain. PLoS One 2011
424
3

Genome-wide methylation in alcohol use disorder subjects: implications for an epigenetic regulation of the cortico-limbic glucocorticoid receptors (NR3C1).
Eleonora Gatta, Dennis R Grayson, James Auta, Vikram Saudagar, Erbo Dong, Ying Chen, Harish R Krishnan, Jenny Drnevich, Subhash C Pandey, Alessandro Guidotti. Mol Psychiatry 2021
24
12


Vitamin C induces Tet-dependent DNA demethylation and a blastocyst-like state in ES cells.
Kathryn Blaschke, Kevin T Ebata, Mohammad M Karimi, Jorge A Zepeda-Martínez, Preeti Goyal, Sahasransu Mahapatra, Angela Tam, Diana J Laird, Martin Hirst, Anjana Rao,[...]. Nature 2013
491
3

DNA Hypomethylating Drugs in Cancer Therapy.
Takahiro Sato, Jean-Pierre J Issa, Patricia Kropf. Cold Spring Harb Perspect Med 2017
57
5

Methylation of tRNAAsp by the DNA methyltransferase homolog Dnmt2.
Mary Grace Goll, Finn Kirpekar, Keith A Maggert, Jeffrey A Yoder, Chih-Lin Hsieh, Xiaoyu Zhang, Kent G Golic, Steven E Jacobsen, Timothy H Bestor. Science 2006
605
3

Methylated DNA and MeCP2 recruit histone deacetylase to repress transcription.
P L Jones, G J Veenstra, P A Wade, D Vermaak, S U Kass, N Landsberger, J Strouboulis, A P Wolffe. Nat Genet 1998
3

CpG islands in vertebrate genomes.
M Gardiner-Garden, M Frommer. J Mol Biol 1987
3

DNMT3A mutations in acute myeloid leukemia.
Timothy J Ley, Li Ding, Matthew J Walter, Michael D McLellan, Tamara Lamprecht, David E Larson, Cyriac Kandoth, Jacqueline E Payton, Jack Baty, John Welch,[...]. N Engl J Med 2010
3


The histone mark H3K36me2 recruits DNMT3A and shapes the intergenic DNA methylation landscape.
Daniel N Weinberg, Simon Papillon-Cavanagh, Haifen Chen, Yuan Yue, Xiao Chen, Kartik N Rajagopalan, Cynthia Horth, John T McGuire, Xinjing Xu, Hamid Nikbakht,[...]. Nature 2019
114
3

Exome sequencing identifies somatic mutations of DNA methyltransferase gene DNMT3A in acute monocytic leukemia.
Xiao-Jing Yan, Jie Xu, Zhao-Hui Gu, Chun-Ming Pan, Gang Lu, Yang Shen, Jing-Yi Shi, Yong-Mei Zhu, Lin Tang, Xiao-Wei Zhang,[...]. Nat Genet 2011
546
3


Structural and mechanistic insights into UHRF1-mediated DNMT1 activation in the maintenance DNA methylation.
Tao Li, Linsheng Wang, Yongming Du, Si Xie, Xi Yang, Fuming Lian, Zhongjun Zhou, Chengmin Qian. Nucleic Acids Res 2018
52
5


Widespread and tissue specific age-related DNA methylation changes in mice.
Shinji Maegawa, George Hinkal, Hyun Soo Kim, Lanlan Shen, Li Zhang, Jiexin Zhang, Nianxiang Zhang, Shoudan Liang, Lawrence A Donehower, Jean-Pierre J Issa. Genome Res 2010
327
3

Multi-tissue DNA methylation age predictor in mouse.
Thomas M Stubbs, Marc Jan Bonder, Anne-Katrien Stark, Felix Krueger, Ferdinand von Meyenn, Oliver Stegle, Wolf Reik. Genome Biol 2017
152
3

Diverse interventions that extend mouse lifespan suppress shared age-associated epigenetic changes at critical gene regulatory regions.
John J Cole, Neil A Robertson, Mohammed Iqbal Rather, John P Thomson, Tony McBryan, Duncan Sproul, Tina Wang, Claire Brock, William Clark, Trey Ideker,[...]. Genome Biol 2017
83
3

Epigenetic aging signatures in mice livers are slowed by dwarfism, calorie restriction and rapamycin treatment.
Tina Wang, Brian Tsui, Jason F Kreisberg, Neil A Robertson, Andrew M Gross, Michael Ku Yu, Hannah Carter, Holly M Brown-Borg, Peter D Adams, Trey Ideker. Genome Biol 2017
109
3

SET8 prevents excessive DNA methylation by methylation-mediated degradation of UHRF1 and DNMT1.
Huifang Zhang, Qinqin Gao, Shuo Tan, Jia You, Cong Lyu, Yunpeng Zhang, Mengmeng Han, Zhaosu Chen, Jialun Li, Hailin Wang,[...]. Nucleic Acids Res 2019
21
14

Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities.
Sven Heinz, Christopher Benner, Nathanael Spann, Eric Bertolino, Yin C Lin, Peter Laslo, Jason X Cheng, Cornelis Murre, Harinder Singh, Christopher K Glass. Mol Cell 2010
3

Programming of DNA methylation patterns.
Howard Cedar, Yehudit Bergman. Annu Rev Biochem 2012
273
3

Regularization Paths for Generalized Linear Models via Coordinate Descent.
Jerome Friedman, Trevor Hastie, Rob Tibshirani. J Stat Softw 2010
3

Simultaneous profiling of 3D genome structure and DNA methylation in single human cells.
Dong-Sung Lee, Chongyuan Luo, Jingtian Zhou, Sahaana Chandran, Angeline Rivkin, Anna Bartlett, Joseph R Nery, Conor Fitzpatrick, Carolyn O'Connor, Jesse R Dixon,[...]. Nat Methods 2019
53
5

3D structures of individual mammalian genomes studied by single-cell Hi-C.
Tim J Stevens, David Lando, Srinjan Basu, Liam P Atkinson, Yang Cao, Steven F Lee, Martin Leeb, Kai J Wohlfahrt, Wayne Boucher, Aoife O'Shaughnessy-Kirwan,[...]. Nature 2017
348
3

Parallel single-cell sequencing links transcriptional and epigenetic heterogeneity.
Christof Angermueller, Stephen J Clark, Heather J Lee, Iain C Macaulay, Mabel J Teng, Tim Xiaoming Hu, Felix Krueger, Sebastien Smallwood, Chris P Ponting, Thierry Voet,[...]. Nat Methods 2016
313
3

Combinatorial patterns of histone acetylations and methylations in the human genome.
Zhibin Wang, Chongzhi Zang, Jeffrey A Rosenfeld, Dustin E Schones, Artem Barski, Suresh Cuddapah, Kairong Cui, Tae-Young Roh, Weiqun Peng, Michael Q Zhang,[...]. Nat Genet 2008
3

Single-cell ChIP-seq reveals cell subpopulations defined by chromatin state.
Assaf Rotem, Oren Ram, Noam Shoresh, Ralph A Sperling, Alon Goren, David A Weitz, Bradley E Bernstein. Nat Biotechnol 2015
418
3

Writers and readers of histone acetylation: structure, mechanism, and inhibition.
Ronen Marmorstein, Ming-Ming Zhou. Cold Spring Harb Perspect Biol 2014
216
3

Chromatin dysregulation and DNA methylation at transcription start sites associated with transcriptional repression in cancers.
Mizuo Ando, Yuki Saito, Guorong Xu, Nam Q Bui, Kate Medetgul-Ernar, Minya Pu, Kathleen Fisch, Shuling Ren, Akihiro Sakai, Takahito Fukusumi,[...]. Nat Commun 2019
27
11

Single-cell multi-omics sequencing of mouse early embryos and embryonic stem cells.
Fan Guo, Lin Li, Jingyun Li, Xinglong Wu, Boqiang Hu, Ping Zhu, Lu Wen, Fuchou Tang. Cell Res 2017
123
3


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.