A citation-based method for searching scientific literature

Gregory M Williams, Vasileios Paschalis, Janice Ortega, Frederick W Muskett, James T Hodgkinson, Guo-Min Li, John W R Schwabe, Robert S Lahue. Proc Natl Acad Sci U S A 2020
Times Cited: 9







List of co-cited articles
132 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Liver-specific deletion of histone deacetylase 3 disrupts metabolic transcriptional networks.
Sarah K Knutson, Brenda J Chyla, Joseph M Amann, Srividya Bhaskara, Stacey S Huppert, Scott W Hiebert. EMBO J 2008
189
11

Evaluation of histone deacetylases as drug targets in Huntington's disease models. Study of HDACs in brain tissues from R6/2 and CAG140 knock-in HD mouse models and human patients and in a neuronal HD cell model.
Luisa Quinti, Vanita Chopra, Dante Rotili, Sergio Valente, Allison Amore, Gianluigi Franci, Sarah Meade, Marta Valenza, Lucia Altucci, Michele M Maxwell,[...]. PLoS Curr 2010
29
11



The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
11

Lysine acetylation targets protein complexes and co-regulates major cellular functions.
Chunaram Choudhary, Chanchal Kumar, Florian Gnad, Michael L Nielsen, Michael Rehman, Tobias C Walther, Jesper V Olsen, Matthias Mann. Science 2009
11

The mouse mismatch repair protein, MSH3, is a nucleoplasmic protein that aggregates into denser nuclear bodies under conditions of stress.
Ian Holt, Le Thanh Lam, Stéphanie Tomé, Derick G Wansink, Hein Te Riele, Geneviève Gourdon, Glenn E Morris. J Cell Biochem 2011
9
11

RNA-SeQC: RNA-seq metrics for quality control and process optimization.
David S DeLuca, Joshua Z Levin, Andrey Sivachenko, Timothy Fennell, Marc-Danie Nazaire, Chris Williams, Michael Reich, Wendy Winckler, Gad Getz. Bioinformatics 2012
452
11

Acetylation regulates DNA repair mechanisms in human cells.
Dorota Piekna-Przybylska, Robert A Bambara, Lata Balakrishnan. Cell Cycle 2016
19
11

HDAC4 reduction: a novel therapeutic strategy to target cytoplasmic huntingtin and ameliorate neurodegeneration.
Michal Mielcarek, Christian Landles, Andreas Weiss, Amyaouch Bradaia, Tamara Seredenina, Linda Inuabasi, Georgina F Osborne, Kristian Wadel, Chrystelle Touller, Rachel Butler,[...]. PLoS Biol 2013
110
11

Synthetic spike-in standards for RNA-seq experiments.
Lichun Jiang, Felix Schlesinger, Carrie A Davis, Yu Zhang, Renhua Li, Marc Salit, Thomas R Gingeras, Brian Oliver. Genome Res 2011
366
11

Hdac2 regulates the cardiac hypertrophic response by modulating Gsk3 beta activity.
Chinmay M Trivedi, Yang Luo, Zhan Yin, Maozhen Zhang, Wenting Zhu, Tao Wang, Thomas Floss, Martin Goettlicher, Patricia Ruiz Noppinger, Wolfgang Wurst,[...]. Nat Med 2007
341
11

Chemical phylogenetics of histone deacetylases.
James E Bradner, Nathan West, Melissa L Grachan, Edward F Greenberg, Stephen J Haggarty, Tandy Warnow, Ralph Mazitschek. Nat Chem Biol 2010
514
11

Maintenance of cardiac energy metabolism by histone deacetylase 3 in mice.
Rusty L Montgomery, Matthew J Potthoff, Michael Haberland, Xiaoxia Qi, Satoshi Matsuzaki, Kenneth M Humphries, James A Richardson, Rhonda Bassel-Duby, Eric N Olson. J Clin Invest 2008
253
11

Motivational, proteostatic and transcriptional deficits precede synapse loss, gliosis and neurodegeneration in the B6.HttQ111/+ model of Huntington's disease.
Robert M Bragg, Sydney R Coffey, Rory M Weston, Seth A Ament, Jeffrey P Cantle, Shawn Minnig, Cory C Funk, Dominic D Shuttleworth, Emily L Woods, Bonnie R Sullivan,[...]. Sci Rep 2017
9
11

Histone deacetylase (HDAC) inhibitors targeting HDAC3 and HDAC1 ameliorate polyglutamine-elicited phenotypes in model systems of Huntington's disease.
Haiqun Jia, Judit Pallos, Vincent Jacques, Alice Lau, Bin Tang, Andrew Cooper, Adeela Syed, Judith Purcell, Yi Chen, Shefali Sharma,[...]. Neurobiol Dis 2012
114
11

Suberoylanilide hydroxamic acid, a histone deacetylase inhibitor, ameliorates motor deficits in a mouse model of Huntington's disease.
Emma Hockly, Victoria M Richon, Benjamin Woodman, Donna L Smith, Xianbo Zhou, Eddie Rosa, Kirupa Sathasivam, Shabnam Ghazi-Noori, Amarbirpal Mahal, Philip A S Lowden,[...]. Proc Natl Acad Sci U S A 2003
633
11

Deregulation of HDAC1 by p25/Cdk5 in neurotoxicity.
Dohoon Kim, Christopher L Frank, Matthew M Dobbin, Rachel K Tsunemoto, Weihong Tu, Peter L Peng, Ji-Song Guan, Byung-Hoon Lee, Lily Y Moy, Paola Giusti,[...]. Neuron 2008
223
11

The histone deacetylase HDAC3 is essential for Purkinje cell function, potentially complicating the use of HDAC inhibitors in SCA1.
Anand Venkatraman, Yuan-Shih Hu, Alessandro Didonna, Marija Cvetanovic, Aleksandar Krbanjevic, Patrice Bilesimo, Puneet Opal. Hum Mol Genet 2014
28
11

Long glutamine tracts cause nuclear localization of a novel form of huntingtin in medium spiny striatal neurons in HdhQ92 and HdhQ111 knock-in mice.
V C Wheeler, J K White, C A Gutekunst, V Vrbanac, M Weaver, X J Li, S H Li, H Yi, J P Vonsattel, J F Gusella,[...]. Hum Mol Genet 2000
342
11

HDAC3 is a critical negative regulator of long-term memory formation.
Susan C McQuown, Ruth M Barrett, Dina P Matheos, Rebecca J Post, George A Rogge, Theresa Alenghat, Shannon E Mullican, Steven Jones, James R Rusche, Mitchell A Lazar,[...]. J Neurosci 2011
341
11

SAHA decreases HDAC 2 and 4 levels in vivo and improves molecular phenotypes in the R6/2 mouse model of Huntington's disease.
Michal Mielcarek, Caroline L Benn, Sophie A Franklin, Donna L Smith, Ben Woodman, Paul A Marks, Gillian P Bates. PLoS One 2011
113
11

Genetic knock-down of HDAC3 does not modify disease-related phenotypes in a mouse model of Huntington's disease.
Lara Moumné, Ken Campbell, David Howland, Yingbin Ouyang, Gillian P Bates. PLoS One 2012
43
11

Histone deacetylase 3 coordinates commensal-bacteria-dependent intestinal homeostasis.
Theresa Alenghat, Lisa C Osborne, Steven A Saenz, Dmytro Kobuley, Carly G K Ziegler, Shannon E Mullican, Inchan Choi, Stephanie Grunberg, Rohini Sinha, Meghan Wynosky-Dolfi,[...]. Nature 2013
125
11

The role of REST in transcriptional and epigenetic dysregulation in Huntington's disease.
Noel J Buckley, Rory Johnson, Chiara Zuccato, Angela Bithell, Elena Cattaneo. Neurobiol Dis 2010
95
11

Transcriptional consequences of 16p11.2 deletion and duplication in mouse cortex and multiplex autism families.
Ian Blumenthal, Ashok Ragavendran, Serkan Erdin, Lambertus Klei, Aarathi Sugathan, Jolene R Guide, Poornima Manavalan, Julian Q Zhou, Vanessa C Wheeler, Joshua Z Levin,[...]. Am J Hum Genet 2014
71
11

DARPP-32 genomic fragments drive Cre expression in postnatal striatum.
Alexey I Bogush, Lois E McCarthy, Chai Tian, Vicki Olm, Tracy Gieringer, Sanja Ivkovic, Michelle E Ehrlich. Genesis 2005
24
11

Epigenetic Mechanisms Involved in Huntington's Disease Pathogenesis.
Kelly E Glajch, Ghazaleh Sadri-Vakili. J Huntingtons Dis 2015
22
11

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources.
Da Wei Huang, Brad T Sherman, Richard A Lempicki. Nat Protoc 2009
11

Histone deacetylase inhibitors: recent insights from basic to clinical knowledge & patenting of anti-cancer actions.
Vincenzo Carafa, Angela Nebbioso, Lucia Altucci. Recent Pat Anticancer Drug Discov 2011
26
11


LBH589, A Hydroxamic Acid-Derived HDAC Inhibitor, is Neuroprotective in Mouse Models of Huntington's Disease.
Vanita Chopra, Luisa Quinti, Prarthana Khanna, Paolo Paganetti, Rainer Kuhn, Anne B Young, Aleksey G Kazantsev, Steven Hersch. J Huntingtons Dis 2016
13
11

Histone deacetylase (HDAC) 1 and 2 complexes regulate both histone acetylation and crotonylation in vivo.
R D W Kelly, A Chandru, P J Watson, Y Song, M Blades, N S Robertson, A G Jamieson, J W R Schwabe, S M Cowley. Sci Rep 2018
39
11

Huntingtin is required for neurogenesis and is not impaired by the Huntington's disease CAG expansion.
J K White, W Auerbach, M P Duyao, J P Vonsattel, J F Gusella, A L Joyner, M E MacDonald. Nat Genet 1997
370
11

Post-translational modifications of lysine in DNA-damage repair.
Snehajyoti Chatterjee, Parijat Senapati, Tapas K Kundu. Essays Biochem 2012
14
11


A novel approach to investigate tissue-specific trinucleotide repeat instability.
Jong-Min Lee, Jie Zhang, Andrew I Su, John R Walker, Tim Wiltshire, Kihwa Kang, Ella Dragileva, Tammy Gillis, Edith T Lopez, Marie-Josee Boily,[...]. BMC Syst Biol 2010
73
11

CellProfiler: image analysis software for identifying and quantifying cell phenotypes.
Anne E Carpenter, Thouis R Jones, Michael R Lamprecht, Colin Clarke, In Han Kang, Ola Friman, David A Guertin, Joo Han Chang, Robert A Lindquist, Jason Moffat,[...]. Genome Biol 2006
11

Histone deacetylase activity is retained in primary neurons expressing mutant huntingtin protein.
Masataka Hoshino, Kazuhiko Tagawa, Tomohiro Okuda, Miho Murata, Kiyomitsu Oyanagi, Nobutaka Arai, Toshio Mizutani, Ichiro Kanazawa, Erich E Wanker, Hitoshi Okazawa. J Neurochem 2003
43
11

Early phenotypes that presage late-onset neurodegenerative disease allow testing of modifiers in Hdh CAG knock-in mice.
Vanessa C Wheeler, Claire-Anne Gutekunst, Vladimir Vrbanac, Lori-Anne Lebel, Gabriele Schilling, Steven Hersch, Robert M Friedlander, James F Gusella, Jean-Paul Vonsattel, David R Borchelt,[...]. Hum Mol Genet 2002
135
11

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
11

PCNA function in the activation and strand direction of MutLα endonuclease in mismatch repair.
Anna Pluciennik, Leonid Dzantiev, Ravi R Iyer, Nicoleta Constantin, Farid A Kadyrov, Paul Modrich. Proc Natl Acad Sci U S A 2010
182
11

Hippocampal dysfunction defines disease onset in Huntington's disease.
Faye Begeti, Laetitia C Schwab, Sarah L Mason, Roger A Barker. J Neurol Neurosurg Psychiatry 2016
31
11

Mapping of DNA instability at the fragile X to a trinucleotide repeat sequence p(CCG)n.
E J Kremer, M Pritchard, M Lynch, S Yu, K Holman, E Baker, S T Warren, D Schlessinger, G R Sutherland, R I Richards. Science 1991
813
11



Choosing an animal model for the study of Huntington's disease.
Mahmoud A Pouladi, A Jennifer Morton, Michael R Hayden. Nat Rev Neurosci 2013
212
11

Widespread expression of Huntington's disease gene (IT15) protein product.
A H Sharp, S J Loev, G Schilling, S H Li, X J Li, J Bao, M V Wagster, J A Kotzuk, J P Steiner, A Lo. Neuron 1995
392
11

Detection of Huntington's disease decades before diagnosis: the Predict-HD study.
J S Paulsen, D R Langbehn, J C Stout, E Aylward, C A Ross, M Nance, M Guttman, S Johnson, M MacDonald, L J Beglinger,[...]. J Neurol Neurosurg Psychiatry 2008
544
11

Length of Uninterrupted CAG, Independent of Polyglutamine Size, Results in Increased Somatic Instability, Hastening Onset of Huntington Disease.
Galen E B Wright, Jennifer A Collins, Chris Kay, Cassandra McDonald, Egor Dolzhenko, Qingwen Xia, Kristina Bečanović, Britt I Drögemöller, Alicia Semaka, Charlotte M Nguyen,[...]. Am J Hum Genet 2019
52
11


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.