A citation-based method for searching scientific literature

Jonathan M Davis, Veronica B Searles, Nathan Anderson, Jonathon Keeney, Laura Dumas, James M Sikela. PLoS Genet 2014
Times Cited: 33







List of co-cited articles
287 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Telomere-to-telomere assembly of a complete human X chromosome.
Karen H Miga, Sergey Koren, Arang Rhie, Mitchell R Vollger, Ariel Gershman, Andrey Bzikadze, Shelise Brooks, Edmund Howe, David Porubsky, Glennis A Logsdon,[...]. Nature 2020
151
3


Satellite DNA-mediated effects on genome regulation.
Z Pezer, J Brajković, I Feliciello, D Ugarkovć. Genome Dyn 2012
47
3

Enhancing our brains: Genomic mechanisms underlying cortical evolution.
Caitlyn Mitchell, Debra L Silver. Semin Cell Dev Biol 2018
13
7

Spectral Repeat Finder (SRF): identification of repetitive sequences using Fourier transformation.
Deepak Sharma, Biju Issac, G P S Raghava, R Ramaswamy. Bioinformatics 2004
82
3


ColorHOR--novel graphical algorithm for fast scan of alpha satellite higher-order repeats and HOR annotation for GenBank sequence of human genome.
Vladimir Paar, Nenad Pavin, Marija Rosandic, Matko Gluncic, Ivan Basar, Robert Pezer, Sonja Durajlija Zinic. Bioinformatics 2005
15
6

Genomic strategies to identify mammalian regulatory sequences.
L A Pennacchio, E M Rubin. Nat Rev Genet 2001
282
3

Basic local alignment search tool.
S F Altschul, W Gish, W Miller, E W Myers, D J Lipman. J Mol Biol 1990
3

Ancient humans and the origin of modern humans.
Janet Kelso, Kay Prüfer. Curr Opin Genet Dev 2014
15
6

Genomics of long-range regulatory elements.
James P Noonan, Andrew S McCallion. Annu Rev Genomics Hum Genet 2010
104
3


Analysis of the centromeric regions of the human genome assembly.
M Katharine Rudd, Huntington F Willard. Trends Genet 2004
116
3

The evolutionary dynamics of repetitive DNA in eukaryotes.
B Charlesworth, P Sniegowski, W Stephan. Nature 1994
3


Regular Higher Order Repeat Structures in Beetle Tribolium castaneum Genome.
Ines Vlahovic, Matko Gluncic, Marija Rosandic, Ðurdica Ugarkovic, Vladimir Paar. Genome Biol Evol 2017
14
7


Linear assembly of a human centromere on the Y chromosome.
Miten Jain, Hugh E Olsen, Daniel J Turner, David Stoddart, Kira V Bulazel, Benedict Paten, David Haussler, Huntington F Willard, Mark Akeson, Karen H Miga. Nat Biotechnol 2018
107
3

Long-read human genome sequencing and its applications.
Glennis A Logsdon, Mitchell R Vollger, Evan E Eichler. Nat Rev Genet 2020
86
3


Intragene higher order repeats in neuroblastoma breakpoint family genes distinguish humans from chimpanzees.
Vladimir Paar, Matko Gluncić, Marija Rosandić, Ivan Basar, Ines Vlahović. Mol Biol Evol 2011
12
8


[A new KIAA1245 gene family with or without HERV-K LTRs in their introns].
T V Vinogradova, P A Zhulidov, A E Illarionova, E D Sverdlov. Bioorg Khim 2002
3
33

Identification of human hornerin and its expression in regenerating and psoriatic skin.
Mikiro Takaishi, Teruhiko Makino, Masaaki Morohashi, Nam-Ho Huh. J Biol Chem 2005
52
3


α satellite DNA variation and function of the human centromere.
Lori L Sullivan, Kimberline Chew, Beth A Sullivan. Nucleus 2017
25
4

Repbase Update, a database of eukaryotic repetitive elements.
J Jurka, V V Kapitonov, A Pavlicek, P Klonowski, O Kohany, J Walichiewicz. Cytogenet Genome Res 2005
3

Alpha-CENTAURI: assessing novel centromeric repeat sequence variation with long read sequencing.
Volkan Sevim, Ali Bashir, Chen-Shan Chin, Karen H Miga. Bioinformatics 2016
24
4

Satellite DNA: An Evolving Topic.
Manuel A Garrido-Ramos. Genes (Basel) 2017
118
3


The role of unequal crossover in alpha-satellite DNA evolution: a computational analysis.
Can Alkan, Evan E Eichler, Jeffrey A Bailey, S Cenk Sahinalp, Eray Tüzün. J Comput Biol 2004
16
6

High Order Formation and Evolution of Hornerin in Primates.
Vanessa Romero, Hirofumi Nakaoka, Kazuyoshi Hosomichi, Ituro Inoue. Genome Biol Evol 2018
3
33

The evolutionary dynamics of alpha-satellite.
M Katharine Rudd, Gregory A Wray, Huntington F Willard. Genome Res 2006
79
3

Chromosome-specific alpha satellites: two distinct families on human chromosome 18.
I A Alexandrov, T D Mashkova, T A Akopian, L I Medvedev, L L Kisselev, S P Mitkevich, Y B Yurov. Genomics 1991
61
3


High-throughput analysis of the satellitome illuminates satellite DNA evolution.
Francisco J Ruiz-Ruano, María Dolores López-León, Josefa Cabrero, Juan Pedro M Camacho. Sci Rep 2016
94
3

CENP-B box and pJalpha sequence distribution in human alpha satellite higher-order repeats (HOR).
Marija Rosandić, Vladimir Paar, Ivan Basar, Matko Gluncić, Nenad Pavin, Ivan Pilas. Chromosome Res 2006
30
3

Improved data analysis for the MinION nanopore sequencer.
Miten Jain, Ian T Fiddes, Karen H Miga, Hugh E Olsen, Benedict Paten, Mark Akeson. Nat Methods 2015
293
3

Genomic organization, sequence and polymorphism of the human chromosome 4-specific alpha-satellite DNA.
T D Mashkova, T A Akopian, L Y Romanova, S P Mitkevich, Y B Yurov, L L Kisselev, I A Alexandrov. Gene 1994
14
7

Reconstructing the Neanderthal brain using computational anatomy.
Takanori Kochiyama, Naomichi Ogihara, Hiroki C Tanabe, Osamu Kondo, Hideki Amano, Kunihiro Hasegawa, Hiromasa Suzuki, Marcia S Ponce de León, Christoph P E Zollikofer, Markus Bastir,[...]. Sci Rep 2018
28
3

Evolution of alpha satellite.
H F Willard. Curr Opin Genet Dev 1991
86
3


Chromosome-specific subfamilies within human alphoid repetitive DNA.
A L Jørgensen, C J Bostock, A L Bak. J Mol Biol 1986
117
3

TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short reads.
Petr Novák, Laura Ávila Robledillo, Andrea Koblížková, Iva Vrbová, Pavel Neumann, Jirí Macas. Nucleic Acids Res 2017
88
3

Copy number variation at 1q21.1 associated with neuroblastoma.
Sharon J Diskin, Cuiping Hou, Joseph T Glessner, Edward F Attiyeh, Marci Laudenslager, Kristopher Bosse, Kristina Cole, Yaël P Mossé, Andrew Wood, Jill E Lynch,[...]. Nature 2009
263
3

Comprehensive next-generation sequence analyses of the entire mitochondrial genome reveal new insights into the molecular diagnosis of mitochondrial DNA disorders.
Hong Cui, Fangyuan Li, David Chen, Guoli Wang, Cavatina K Truong, Gregory M Enns, Brett Graham, Margherita Milone, Megan L Landsverk, Jing Wang,[...]. Genet Med 2013
65
3

A variant in the carboxyl-terminus of connexin 40 alters GAP junctions and increases risk for tetralogy of Fallot.
Valentina Guida, Rosangela Ferese, Marcella Rocchetti, Monica Bonetti, Anna Sarkozy, Serena Cecchetti, Vania Gelmetti, Francesca Lepri, Massimiliano Copetti, Giuseppe Lamorte,[...]. Eur J Hum Genet 2013
26
3

High incidence of cardiac malformations in connexin40-deficient mice.
Hong Gu, Frank C Smith, Steven M Taffet, Mario Delmar. Circ Res 2003
92
3

Disorders Associated With Diverse, Recurrent Deletions and Duplications at 1q21.1.
Hui Pang, Xiaowei Yu, Young Mi Kim, Xianfu Wang, Jeremy K Jinkins, Jianing Yin, Shibo Li, Hongcang Gu. Front Genet 2020
2
50

Mitochondrial DNA mutations in human disease.
Robert W Taylor, Doug M Turnbull. Nat Rev Genet 2005
3


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.