A citation-based method for searching scientific literature

Yan Xu, Takako Mizuno, Anusha Sridharan, Yina Du, Minzhe Guo, Jie Tang, Kathryn A Wikenheiser-Brokamp, Anne-Karina T Perl, Vincent A Funari, Jason J Gokey, Barry R Stripp, Jeffrey A Whitsett. JCI Insight 2016
Times Cited: 249







List of co-cited articles
1149 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Ly6Chi monocytes direct alternatively activated profibrotic macrophage regulation of lung fibrosis.
Michael A Gibbons, Alison C MacKinnon, Prakash Ramachandran, Kevin Dhaliwal, Rodger Duffin, Alexander T Phythian-Adams, Nico van Rooijen, Christopher Haslett, Sarah E Howie, A John Simpson,[...]. Am J Respir Crit Care Med 2011
261
4

Repetitive intratracheal bleomycin models several features of idiopathic pulmonary fibrosis.
Amber L Degryse, Harikrishna Tanjore, Xiaochuan C Xu, Vasiliy V Polosukhin, Brittany R Jones, Frank B McMahon, Linda A Gleaves, Timothy S Blackwell, William E Lawson. Am J Physiol Lung Cell Mol Physiol 2010
164
4


WNT1-inducible signaling protein-1 mediates pulmonary fibrosis in mice and is upregulated in humans with idiopathic pulmonary fibrosis.
Melanie Königshoff, Monika Kramer, Nisha Balsara, Jochen Wilhelm, Oana Veronica Amarie, Andreas Jahn, Frank Rose, Ludger Fink, Werner Seeger, Liliana Schaefer,[...]. J Clin Invest 2009
385
4

A Phase 2 Randomized Controlled Study of Tralokinumab in Subjects with Idiopathic Pulmonary Fibrosis.
Joseph M Parker, Ian N Glaspole, Lisa H Lancaster, Tarik J Haddad, Dewei She, Stephanie L Roseti, Jon P Fiening, Ethan P Grant, Chris M Kell, Kevin R Flaherty. Am J Respir Crit Care Med 2018
53
7

Niche-mediated BMP/SMAD signaling regulates lung alveolar stem cell proliferation and differentiation.
Mei-I Chung, Melissa Bujnis, Christina E Barkauskas, Yoshihiko Kobayashi, Brigid L M Hogan. Development 2018
77
5

HTII-280, a biomarker specific to the apical plasma membrane of human lung alveolar type II cells.
Robert F Gonzalez, Lennell Allen, Linda Gonzales, Philip L Ballard, Leland G Dobbs. J Histochem Cytochem 2010
41
9

The extracellular matrix - the under-recognized element in lung disease?
Janette K Burgess, Thais Mauad, Gavin Tjin, Jenny C Karlsson, Gunilla Westergren-Thorsson. J Pathol 2016
103
4

Two-Way Conversion between Lipogenic and Myogenic Fibroblastic Phenotypes Marks the Progression and Resolution of Lung Fibrosis.
Elie El Agha, Alena Moiseenko, Vahid Kheirollahi, Stijn De Langhe, Slaven Crnkovic, Grazyna Kwapiszewska, Marten Szibor, Djuro Kosanovic, Felix Schwind, Ralph T Schermuly,[...]. Cell Stem Cell 2017
95
4

Dimensionality reduction for visualizing single-cell data using UMAP.
Etienne Becht, Leland McInnes, John Healy, Charles-Antoine Dutertre, Immanuel W H Kwok, Lai Guan Ng, Florent Ginhoux, Evan W Newell. Nat Biotechnol 2018
821
4

Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics.
Kelly Street, Davide Risso, Russell B Fletcher, Diya Das, John Ngai, Nir Yosef, Elizabeth Purdom, Sandrine Dudoit. BMC Genomics 2018
337
4

Hallmarks of the ageing lung.
Silke Meiners, Oliver Eickelberg, Melanie Königshoff. Eur Respir J 2015
139
4

Cellular Senescence as a Mechanism and Target in Chronic Lung Diseases.
Peter J Barnes, Jonathan Baker, Louise E Donnelly. Am J Respir Crit Care Med 2019
77
5

Fibrosis of two: Epithelial cell-fibroblast interactions in pulmonary fibrosis.
Norihiko Sakai, Andrew M Tager. Biochim Biophys Acta 2013
149
4

TAZ contributes to pulmonary fibrosis by activating profibrotic functions of lung fibroblasts.
Satoshi Noguchi, Akira Saito, Yu Mikami, Hirokazu Urushiyama, Masafumi Horie, Hirotaka Matsuzaki, Hideyuki Takeshima, Kosuke Makita, Naoya Miyashita, Akihisa Mitani,[...]. Sci Rep 2017
50
8

The lysophosphatidic acid receptor LPA1 links pulmonary fibrosis to lung injury by mediating fibroblast recruitment and vascular leak.
Andrew M Tager, Peter LaCamera, Barry S Shea, Gabriele S Campanella, Moisés Selman, Zhenwen Zhao, Vasiliy Polosukhin, John Wain, Banu A Karimi-Shah, Nancy D Kim,[...]. Nat Med 2008
480
4

Lung Microbiota Contribute to Pulmonary Inflammation and Disease Progression in Pulmonary Fibrosis.
David N O'Dwyer, Shanna L Ashley, Stephen J Gurczynski, Meng Xia, Carol Wilke, Nicole R Falkowski, Katy C Norman, Kelly B Arnold, Gary B Huffnagle, Margaret L Salisbury,[...]. Am J Respir Crit Care Med 2019
74
5

Lung microbiome and disease progression in idiopathic pulmonary fibrosis: an analysis of the COMET study.
MeiLan K Han, Yueren Zhou, Susan Murray, Nabihah Tayob, Imre Noth, Vibha N Lama, Bethany B Moore, Eric S White, Kevin R Flaherty, Gary B Huffnagle,[...]. Lancet Respir Med 2014
209
4

Relationship of DNA methylation and gene expression in idiopathic pulmonary fibrosis.
Ivana V Yang, Brent S Pedersen, Einat Rabinovich, Corinne E Hennessy, Elizabeth J Davidson, Elissa Murphy, Brenda Juan Guardela, John R Tedrow, Yingze Zhang, Mandal K Singh,[...]. Am J Respir Crit Care Med 2014
93
4


Bronchioalveolar stem cells are a main source for regeneration of distal lung epithelia in vivo.
Isabelle Salwig, Birgit Spitznagel, Ana Ivonne Vazquez-Armendariz, Keynoosh Khalooghi, Stefan Guenther, Susanne Herold, Marten Szibor, Thomas Braun. EMBO J 2019
57
7

An Exome Sequencing Study to Assess the Role of Rare Genetic Variation in Pulmonary Fibrosis.
Slavé Petrovski, Jamie L Todd, Michael T Durheim, Quanli Wang, Jason W Chien, Fran L Kelly, Courtney Frankel, Caroline M Mebane, Zhong Ren, Joshua Bridgers,[...]. Am J Respir Crit Care Med 2017
96
4

Rare variants in RTEL1 are associated with familial interstitial pneumonia.
Joy D Cogan, Jonathan A Kropski, Min Zhao, Daphne B Mitchell, Lynette Rives, Cheryl Markin, Errine T Garnett, Keri H Montgomery, Wendi R Mason, David F McKean,[...]. Am J Respir Crit Care Med 2015
107
4

Mechanosensing and fibrosis.
Daniel J Tschumperlin, Giovanni Ligresti, Moira B Hilscher, Vijay H Shah. J Clin Invest 2018
97
4

Therapeutic effects of telomerase in mice with pulmonary fibrosis induced by damage to the lungs and short telomeres.
Juan Manuel Povedano, Paula Martinez, Rosa Serrano, Águeda Tejera, Gonzalo Gómez-López, Maria Bobadilla, Juana Maria Flores, Fátima Bosch, Maria A Blasco. Elife 2018
44
9

Single-cell connectomic analysis of adult mammalian lungs.
Micha Sam Brickman Raredon, Taylor Sterling Adams, Yasir Suhail, Jonas Christian Schupp, Sergio Poli, Nir Neumark, Katherine L Leiby, Allison Marie Greaney, Yifan Yuan, Corey Horien,[...]. Sci Adv 2019
48
8

Grp78 Loss in Epithelial Progenitors Reveals an Age-linked Role for Endoplasmic Reticulum Stress in Pulmonary Fibrosis.
Zea Borok, Masafumi Horie, Per Flodby, Hongjun Wang, Yixin Liu, Sivagini Ganesh, Amy L Firth, Parviz Minoo, Changgong Li, Michael F Beers,[...]. Am J Respir Crit Care Med 2020
27
14

YAP/TAZ incorporation in the β-catenin destruction complex orchestrates the Wnt response.
Luca Azzolin, Tito Panciera, Sandra Soligo, Elena Enzo, Silvio Bicciato, Sirio Dupont, Silvia Bresolin, Chiara Frasson, Giuseppe Basso, Vincenza Guzzardo,[...]. Cell 2014
599
4

Epithelial cell alpha3beta1 integrin links beta-catenin and Smad signaling to promote myofibroblast formation and pulmonary fibrosis.
Kevin K Kim, Ying Wei, Charles Szekeres, Matthias C Kugler, Paul J Wolters, Marla L Hill, James A Frank, Alexis N Brumwell, Sarah E Wheeler, Jordan A Kreidberg,[...]. J Clin Invest 2009
307
4

TAZ is required for lung alveolar epithelial cell differentiation after injury.
Tianhe Sun, Zhiyu Huang, Hua Zhang, Clara Posner, Guiquan Jia, Thirumalai R Ramalingam, Min Xu, Hans Brightbill, Jackson G Egen, Anwesha Dey,[...]. JCI Insight 2019
21
19

Phase 2 clinical trial of PBI-4050 in patients with idiopathic pulmonary fibrosis.
Nasreen Khalil, Helene Manganas, Christopher J Ryerson, Shane Shapera, Andre M Cantin, Paul Hernandez, Eric E Turcotte, Joseph M Parker, John E Moran, Gary R Albert,[...]. Eur Respir J 2019
35
11


Mitochondrial Dysfunction Induces Senescence with a Distinct Secretory Phenotype.
Christopher D Wiley, Michael C Velarde, Pacome Lecot, Su Liu, Ethan A Sarnoski, Adam Freund, Kotaro Shirakawa, Hyung W Lim, Sonnet S Davis, Arvind Ramanathan,[...]. Cell Metab 2016
395
4

Integrin α6β4 identifies an adult distal lung epithelial population with regenerative potential in mice.
Harold A Chapman, Xiaopeng Li, Jonathan P Alexander, Alexis Brumwell, Walter Lorizio, Kevin Tan, Arnoud Sonnenberg, Ying Wei, Thiennu H Vu. J Clin Invest 2011
260
4

Reversed graph embedding resolves complex single-cell trajectories.
Xiaojie Qiu, Qi Mao, Ying Tang, Li Wang, Raghav Chawla, Hannah A Pliner, Cole Trapnell. Nat Methods 2017
744
4

Clonal Dynamics Reveal Two Distinct Populations of Basal Cells in Slow-Turnover Airway Epithelium.
Julie K Watson, Steffen Rulands, Adam C Wilkinson, Aline Wuidart, Marielle Ousset, Alexandra Van Keymeulen, Berthold Göttgens, Cédric Blanpain, Benjamin D Simons, Emma L Rawlins. Cell Rep 2015
86
4

Human lung development: recent progress and new challenges.
Marko Z Nikolić, Dawei Sun, Emma L Rawlins. Development 2018
54
7

Building and Regenerating the Lung Cell by Cell.
Jeffrey A Whitsett, Tanya V Kalin, Yan Xu, Vladimir V Kalinichenko. Physiol Rev 2019
56
7

Generation of multiciliated cells in functional airway epithelia from human induced pluripotent stem cells.
Amy L Firth, Carl T Dargitz, Susan J Qualls, Tushar Menon, Rebecca Wright, Oded Singer, Fred H Gage, Ajai Khanna, Inder M Verma. Proc Natl Acad Sci U S A 2014
129
4


Novel dynamics of human mucociliary differentiation revealed by single-cell RNA sequencing of nasal epithelial cultures.
Sandra Ruiz García, Marie Deprez, Kevin Lebrigand, Amélie Cavard, Agnès Paquet, Marie-Jeanne Arguel, Virginie Magnone, Marin Truchi, Ignacio Caballero, Sylvie Leroy,[...]. Development 2019
64
6

A three-dimensional model of human lung development and disease from pluripotent stem cells.
Ya-Wen Chen, Sarah Xuelian Huang, Ana Luisa Rodrigues Toste de Carvalho, Siu-Hong Ho, Mohammad Naimul Islam, Stefano Volpi, Luigi D Notarangelo, Michael Ciancanelli, Jean-Laurent Casanova, Jahar Bhattacharya,[...]. Nat Cell Biol 2017
216
4

Dynamic regulation of platelet-derived growth factor receptor α expression in alveolar fibroblasts during realveolarization.
Leiling Chen, Thomas Acciani, Tim Le Cras, Carolyn Lutzko, Anne-Karina T Perl. Am J Respir Cell Mol Biol 2012
98
4

Lung organoids: current uses and future promise.
Christina E Barkauskas, Mei-I Chung, Bryan Fioret, Xia Gao, Hiroaki Katsura, Brigid L M Hogan. Development 2017
149
4

Pirfenidone in patients with unclassifiable progressive fibrosing interstitial lung disease: a double-blind, randomised, placebo-controlled, phase 2 trial.
Toby M Maher, Tamera J Corte, Aryeh Fischer, Michael Kreuter, David J Lederer, Maria Molina-Molina, Judit Axmann, Klaus-Uwe Kirchgaessler, Katerina Samara, Frank Gilberg,[...]. Lancet Respir Med 2020
140
4

Nintedanib for Systemic Sclerosis-Associated Interstitial Lung Disease.
Oliver Distler, Kristin B Highland, Martina Gahlemann, Arata Azuma, Aryeh Fischer, Maureen D Mayes, Ganesh Raghu, Wiebke Sauter, Mannaig Girard, Margarida Alves,[...]. N Engl J Med 2019
368
4

Increased monocyte count as a cellular biomarker for poor outcomes in fibrotic diseases: a retrospective, multicentre cohort study.
Madeleine K D Scott, Katie Quinn, Qin Li, Robert Carroll, Hayley Warsinske, Francesco Vallania, Shirley Chen, Mary A Carns, Kathleen Aren, Jiehuan Sun,[...]. Lancet Respir Med 2019
59
6

Two-Way Conversion between Lipogenic and Myogenic Fibroblastic Phenotypes Marks the Progression and Resolution of Lung Fibrosis.
Elie El Agha, Alena Moiseenko, Vahid Kheirollahi, Stijn De Langhe, Slaven Crnkovic, Grazyna Kwapiszewska, Marten Szibor, Djuro Kosanovic, Felix Schwind, Ralph T Schermuly,[...]. Cell Stem Cell 2017
41
9

Evidence for the involvement of fibroblast growth factor 10 in lipofibroblast formation during embryonic lung development.
Denise Al Alam, Elie El Agha, Reiko Sakurai, Vahid Kheirollahi, Alena Moiseenko, Soula Danopoulos, Amit Shrestha, Carole Schmoldt, Jennifer Quantius, Susanne Herold,[...]. Development 2015
50
8

FGF signaling is required for myofibroblast differentiation during alveolar regeneration.
Anne-Karina T Perl, Emily Gale. Am J Physiol Lung Cell Mol Physiol 2009
71
5


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.