A citation-based method for searching scientific literature

Zsofia Sztupinszki, Miklos Diossy, Marcin Krzystanek, Lilla Reiniger, István Csabai, Francesco Favero, Nicolai J Birkbak, Aron C Eklund, Ali Syed, Zoltan Szallasi. NPJ Breast Cancer 2018
Times Cited: 66







List of co-cited articles
439 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



The tetraspanin CD151 marks a unique population of activated human T cells.
Mildred D Perez, Lillian Seu, Kelsey E Lowman, David C Moylan, Christopher Tidwell, Shekwonya Samuel, Alexandra Duverger, Frederic H Wagner, Eric Carlin, Vishal Sharma,[...]. Sci Rep 2020
2
50

voom: Precision weights unlock linear model analysis tools for RNA-seq read counts.
Charity W Law, Yunshun Chen, Wei Shi, Gordon K Smyth. Genome Biol 2014
1

EAU guidelines on non-muscle-invasive urothelial carcinoma of the bladder.
Marko Babjuk, Willem Oosterlinck, Richard Sylvester, Eero Kaasinen, Andreas Böhle, Juan Palou-Redorta. Eur Urol 2008
498
1

Chromosome 1q21.3 amplification is a trackable biomarker and actionable target for breast cancer recurrence.
Jian Yuan Goh, Min Feng, Wenyu Wang, Gokce Oguz, Siti Maryam J M Yatim, Puay Leng Lee, Yi Bao, Tse Hui Lim, Panpan Wang, Wai Leong Tam,[...]. Nat Med 2017
84
1

LncRNA MCF2L-AS1 aggravates proliferation, invasion and glycolysis of colorectal cancer cells via the crosstalk with miR-874-3p/FOXM1 signaling axis.
Zhandong Zhang, Wei Yang, Ning Li, Xiaobin Chen, Fei Ma, Jian Yang, Yonglei Zhang, XiaoFei Chai, Bin Zhang, Xinfang Hou,[...]. Carcinogenesis 2021
16
6

GAGE: generally applicable gene set enrichment for pathway analysis.
Weijun Luo, Michael S Friedman, Kerby Shedden, Kurt D Hankenson, Peter J Woolf. BMC Bioinformatics 2009
713
1

Bladder cancer risk and genetic variation in AKR1C3 and other metabolizing genes.
Jonine D Figueroa, Núria Malats, Montserrat García-Closas, Francisco X Real, Debra Silverman, Manolis Kogevinas, Stephen Chanock, Robert Welch, Mustafa Dosemeci, Qing Lan,[...]. Carcinogenesis 2008
76
1

p16 (CDKN2) is a major deletion target at 9p21 in bladder cancer.
M P Williamson, P A Elder, M E Shaw, J Devlin, M A Knowles. Hum Mol Genet 1995
157
1

Highly prevalent TERT promoter mutations in bladder cancer and glioblastoma.
Xiaoli Liu, Guojun Wu, Yuan Shan, Christian Hartmann, Andreas von Deimling, Mingzhao Xing. Cell Cycle 2013
102
1

Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis.
Chiaowen Joyce Hsiao, PoYuan Tung, John D Blischak, Jonathan E Burnett, Kenneth A Barr, Kushal K Dey, Matthew Stephens, Yoav Gilad. Genome Res 2020
24
4

Bladder cancers arise from distinct urothelial sub-populations.
Jason Van Batavia, Tammer Yamany, Andrei Molotkov, Hanbin Dan, Mahesh Mansukhani, Ekaterina Batourina, Kerry Schneider, Daniel Oyon, Mark Dunlop, Xue-Ru Wu,[...]. Nat Cell Biol 2014
132
1

High expression of ERBB2 is an independent risk factor for reduced recurrence-free survival in patients with stage T1 non-muscle-invasive bladder cancer.
Danijel Sikic, Markus Eckstein, Veronika Weyerer, Jennifer Kubon, Johannes Breyer, Florian Roghmann, Frank Kunath, Bastian Keck, Philipp Erben, Arndt Hartmann,[...]. Urol Oncol 2022
2
50

Novel variants in MLL confer to bladder cancer recurrence identified by whole-exome sequencing.
Song Wu, Zhao Yang, Rui Ye, Dan An, Chong Li, Yitian Wang, Yongqiang Wang, Yi Huang, Huan Liu, Feida Li,[...]. Oncotarget 2016
19
5

Regulators of genetic risk of breast cancer identified by integrative network analysis.
Mauro A A Castro, Ines de Santiago, Thomas M Campbell, Courtney Vaughn, Theresa E Hickey, Edith Ross, Wayne D Tilley, Florian Markowetz, Bruce A J Ponder, Kerstin B Meyer. Nat Genet 2016
91
1

The breast cancer information core: database design, structure, and scope.
C Szabo, A Masiello, J F Ryan, L C Brody. Hum Mutat 2000
137
1

ENIGMA--evidence-based network for the interpretation of germline mutant alleles: an international initiative to evaluate risk and clinical significance associated with sequence variation in BRCA1 and BRCA2 genes.
Amanda B Spurdle, Sue Healey, Andrew Devereau, Frans B L Hogervorst, Alvaro N A Monteiro, Katherine L Nathanson, Paolo Radice, Dominique Stoppa-Lyonnet, Sean Tavtigian, Barbara Wappenschmidt,[...]. Hum Mutat 2012
204
1



ROCR: visualizing classifier performance in R.
Tobias Sing, Oliver Sander, Niko Beerenwinkel, Thomas Lengauer. Bioinformatics 2005
1

Homologous Recombination Deficiency in Breast Cancer: A Clinical Review.
Wendie D den Brok, Kasmintan A Schrader, Sophie Sun, Anna V Tinker, Eric Yang Zhao, Samuel Aparicio, Karen A Gelmon. JCO Precis Oncol 2017
12
8

The Cancer Genome Atlas Pan-Cancer analysis project.
John N Weinstein, Eric A Collisson, Gordon B Mills, Kenna R Mills Shaw, Brad A Ozenberger, Kyle Ellrott, Ilya Shmulevich, Chris Sander, Joshua M Stuart. Nat Genet 2013
1

Two genetic hits (more or less) to cancer.
A G Knudson. Nat Rev Cancer 2001
640
1

LOVD v.2.0: the next generation in gene variant databases.
Ivo F A C Fokkema, Peter E M Taschner, Gerard C P Schaafsma, J Celli, Jeroen F J Laros, Johan T den Dunnen. Hum Mutat 2011
620
1

A practical guide to cancer subclonal reconstruction from DNA sequencing.
Maxime Tarabichi, Adriana Salcedo, Amit G Deshwar, Máire Ni Leathlobhair, Jeff Wintersinger, David C Wedge, Peter Van Loo, Quaid D Morris, Paul C Boutros. Nat Methods 2021
28
3

Loss of heterozygosity of essential genes represents a widespread class of potential cancer vulnerabilities.
Caitlin A Nichols, William J Gibson, Meredith S Brown, Jack A Kosmicki, John P Busanovich, Hope Wei, Laura M Urbanski, Naomi Curimjee, Ashton C Berger, Galen F Gao,[...]. Nat Commun 2020
28
3

Tandem duplication of chromosomal segments is common in ovarian and breast cancer genomes.
David J McBride, Dariush Etemadmoghadam, Susanna L Cooke, Kathryn Alsop, Joshy George, Adam Butler, Juok Cho, Danushka Galappaththige, Chris Greenman, Karen D Howarth,[...]. J Pathol 2012
65
1

The impact of mitotic errors on cell proliferation and tumorigenesis.
Michelle S Levine, Andrew J Holland. Genes Dev 2018
80
1

Genomic landscape of paediatric adrenocortical tumours.
Emilia M Pinto, Xiang Chen, John Easton, David Finkelstein, Zhifa Liu, Stanley Pounds, Carlos Rodriguez-Galindo, Troy C Lund, Elaine R Mardis, Richard K Wilson,[...]. Nat Commun 2015
104
1

Comprehensive Pan-Genomic Characterization of Adrenocortical Carcinoma.
Siyuan Zheng, Andrew D Cherniack, Ninad Dewal, Richard A Moffitt, Ludmila Danilova, Bradley A Murray, Antonio M Lerario, Tobias Else, Theo A Knijnenburg, Giovanni Ciriello,[...]. Cancer Cell 2016
310
1

The landscape of somatic copy-number alteration across human cancers.
Rameen Beroukhim, Craig H Mermel, Dale Porter, Guo Wei, Soumya Raychaudhuri, Jerry Donovan, Jordi Barretina, Jesse S Boehm, Jennifer Dobson, Mitsuyoshi Urashima,[...]. Nature 2010
1

Chronic hypoxia decreases synthesis of homologous recombination proteins to offset chemoresistance and radioresistance.
Norman Chan, Marianne Koritzinsky, Helen Zhao, Ranjit Bindra, Peter M Glazer, Simon Powell, Abdellah Belmaaza, Brad Wouters, Robert G Bristow. Cancer Res 2008
224
1

DNA amplification by breakage/fusion/bridge cycles initiated by spontaneous telomere loss in a human cancer cell line.
Anthony W I Lo, Laure Sabatier, Bijan Fouladi, Géraldine Pottier, Michelle Ricoul, John P Murnane. Neoplasia 2002
118
1

The genomic landscape of hypodiploid acute lymphoblastic leukemia.
Linda Holmfeldt, Lei Wei, Ernesto Diaz-Flores, Michael Walsh, Jinghui Zhang, Li Ding, Debbie Payne-Turner, Michelle Churchman, Anna Andersson, Shann-Ching Chen,[...]. Nat Genet 2013
413
1

The Immune Landscape of Cancer.
Vésteinn Thorsson, David L Gibbs, Scott D Brown, Denise Wolf, Dante S Bortone, Tai-Hsien Ou Yang, Eduard Porta-Pardo, Galen F Gao, Christopher L Plaisier, James A Eddy,[...]. Immunity 2019
139
1

Exploring the landscape of focal amplifications in cancer using AmpliconArchitect.
Viraj Deshpande, Jens Luebeck, Nam-Phuong D Nguyen, Mehrdad Bakhtiari, Kristen M Turner, Richard Schwab, Hannah Carter, Paul S Mischel, Vineet Bafna. Nat Commun 2019
61
1

Replication stress links structural and numerical cancer chromosomal instability.
Rebecca A Burrell, Sarah E McClelland, David Endesfelder, Petra Groth, Marie-Christine Weller, Nadeem Shaikh, Enric Domingo, Nnennaya Kanu, Sally M Dewhurst, Eva Gronroos,[...]. Nature 2013
496
1

The Cancer Genome Atlas Comprehensive Molecular Characterization of Renal Cell Carcinoma.
Christopher J Ricketts, Aguirre A De Cubas, Huihui Fan, Christof C Smith, Martin Lang, Ed Reznik, Reanne Bowlby, Ewan A Gibb, Rehan Akbani, Rameen Beroukhim,[...]. Cell Rep 2018
132
1

Interplay between whole-genome doubling and the accumulation of deleterious alterations in cancer evolution.
Saioa López, Emilia L Lim, Stuart Horswell, Kerstin Haase, Ariana Huebner, Michelle Dietzen, Thanos P Mourikis, Thomas B K Watkins, Andrew Rowan, Sally M Dewhurst,[...]. Nat Genet 2020
69
1

A cell-based model system links chromothripsis with hyperploidy.
Balca R Mardin, Alexandros P Drainas, Sebastian M Waszak, Joachim Weischenfeldt, Mayumi Isokane, Adrian M Stütz, Benjamin Raeder, Theocharis Efthymiopoulos, Christopher Buccitelli, Maia Segura-Wang,[...]. Mol Syst Biol 2015
82
1

Repair of multiple simultaneous double-strand breaks causes bursts of genome-wide clustered hypermutation.
Cynthia J Sakofsky, Natalie Saini, Leszek J Klimczak, Kin Chan, Ewa P Malc, Piotr A Mieczkowski, Adam B Burkholder, David Fargo, Dmitry A Gordenin. PLoS Biol 2019
23
4

Tumor aneuploidy correlates with markers of immune evasion and with reduced response to immunotherapy.
Teresa Davoli, Hajime Uno, Eric C Wooten, Stephen J Elledge. Science 2017
600
1

A One-Penny Imputed Genome from Next-Generation Reference Panels.
Brian L Browning, Ying Zhou, Sharon R Browning. Am J Hum Genet 2018
404
1

Targeted next-generation sequencing of head and neck squamous cell carcinoma identifies novel genetic alterations in HPV+ and HPV- tumors.
Matthias Lechner, Garrett M Frampton, Tim Fenton, Andrew Feber, Gary Palmer, Amrita Jay, Nischalan Pillay, Martin Forster, Maureen T Cronin, Doron Lipson,[...]. Genome Med 2013
153
1


The Role of Aneuploidy in Cancer Evolution.
Laurent Sansregret, Charles Swanton. Cold Spring Harb Perspect Med 2017
116
1

Mutational signatures associated with tobacco smoking in human cancer.
Ludmil B Alexandrov, Young Seok Ju, Kerstin Haase, Peter Van Loo, Iñigo Martincorena, Serena Nik-Zainal, Yasushi Totoki, Akihiro Fujimoto, Hidewaki Nakagawa, Tatsuhiro Shibata,[...]. Science 2016
519
1

The Tandem Duplicator Phenotype Is a Prevalent Genome-Wide Cancer Configuration Driven by Distinct Gene Mutations.
Francesca Menghi, Floris P Barthel, Vinod Yadav, Ming Tang, Bo Ji, Zhonghui Tang, Gregory W Carter, Yijun Ruan, Ralph Scully, Roel G W Verhaak,[...]. Cancer Cell 2018
81
1


Whole-genome landscape of pancreatic neuroendocrine tumours.
Aldo Scarpa, David K Chang, Katia Nones, Vincenzo Corbo, Ann-Marie Patch, Peter Bailey, Rita T Lawlor, Amber L Johns, David K Miller, Andrea Mafficini,[...]. Nature 2017
444
1


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.