A citation-based method for searching scientific literature

Sarah T South, Charles Lee, Allen N Lamb, Anne W Higgins, Hutton M Kearney. Genet Med 2013
Times Cited: 161







List of co-cited articles
557 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Clinical Next Generation Sequencing Outperforms Standard Microbiological Culture for Characterizing Polymicrobial Samples.
Lisa A Cummings, Kyoko Kurosawa, Daniel R Hoogestraat, Dhruba J SenGupta, Febrian Candra, Michael Doyle, Stephanie Thielges, Tyler A Land, Christopher A Rosenthal, Noah G Hoffman,[...]. Clin Chem 2016
37
2


Genenames.org: the HGNC and VGNC resources in 2017.
Bethan Yates, Bryony Braschi, Kristian A Gray, Ruth L Seal, Susan Tweedie, Elspeth A Bruford. Nucleic Acids Res 2017
190
1

Opportunities and challenges associated with clinical diagnostic genome sequencing: a report of the Association for Molecular Pathology.
Iris Schrijver, Nazneen Aziz, Daniel H Farkas, Manohar Furtado, Andrea Ferreira Gonzalez, Timothy C Greiner, Wayne W Grody, Tina Hambuch, Lisa Kalman, Jeffrey A Kant,[...]. J Mol Diagn 2012
104
1


Standards and Guidelines for Validating Next-Generation Sequencing Bioinformatics Pipelines: A Joint Recommendation of the Association for Molecular Pathology and the College of American Pathologists.
Somak Roy, Christopher Coldren, Arivarasan Karunamurthy, Nefize S Kip, Eric W Klee, Stephen E Lincoln, Annette Leon, Mrudula Pullambhatla, Robyn L Temple-Smolkin, Karl V Voelkerding,[...]. J Mol Diagn 2018
144
1

Clinician perspectives about molecular genetic testing for heritable conditions and development of a clinician-friendly laboratory report.
Ira M Lubin, Margaret M McGovern, Zoe Gibson, Susan J Gross, Elaine Lyon, Roberta A Pagon, Victoria M Pratt, Jamila Rashid, Colleen Shaw, Lander Stoddard,[...]. J Mol Diagn 2009
32
3

Tumor Mutational Burden and Efficacy of Nivolumab Monotherapy and in Combination with Ipilimumab in Small-Cell Lung Cancer.
Matthew D Hellmann, Margaret K Callahan, Mark M Awad, Emiliano Calvo, Paolo A Ascierto, Akin Atmaca, Naiyer A Rizvi, Fred R Hirsch, Giovanni Selvaggi, Joseph D Szustakowski,[...]. Cancer Cell 2018
377
1

OncoKB: A Precision Oncology Knowledge Base.
Debyani Chakravarty, Jianjiong Gao, Sarah M Phillips, Ritika Kundra, Hongxin Zhang, Jiaojiao Wang, Julia E Rudolph, Rona Yaeger, Tara Soumerai, Moriah H Nissan,[...]. JCO Precis Oncol 2017
632
1

Designing and Implementing NGS Tests for Inherited Disorders: A Practical Framework with Step-by-Step Guidance for Clinical Laboratories.
Avni Santani, Birgitte B Simen, Marian Briggs, Matthew Lebo, Jason D Merker, Marina Nikiforova, Patricia Vasalos, Karl Voelkerding, John Pfeifer, Birgit Funke. J Mol Diagn 2019
6
16


Open sharing of genomic data: Who does it and why?
Tobias Haeusermann, Bastian Greshake, Alessandro Blasimme, Darja Irdam, Martin Richards, Effy Vayena. PLoS One 2017
27
3

Performance Characteristics and Validation of Next-Generation Sequencing for Human Leucocyte Antigen Typing.
Eric T Weimer, Maureen Montgomery, Rosanne Petraroia, John Crawford, John L Schmitz. J Mol Diagn 2016
40
2

Assembling and Validating Bioinformatic Pipelines for Next-Generation Sequencing Clinical Assays.
Jeffrey A SoRelle, Megan Wachsmann, Brandi L Cantarel. Arch Pathol Lab Med 2020
3
33

DbVar and DGVa: public archives for genomic structural variation.
Ilkka Lappalainen, John Lopez, Lisa Skipper, Timothy Hefferon, J Dylan Spalding, John Garner, Chao Chen, Michael Maguire, Matt Corbett, George Zhou,[...]. Nucleic Acids Res 2013
119
1

Homologous recombination deficiency (HRD) status predicts response to standard neoadjuvant chemotherapy in patients with triple-negative or BRCA1/2 mutation-associated breast cancer.
Melinda L Telli, Jessica Hellyer, William Audeh, Kristin C Jensen, Shikha Bose, Kirsten M Timms, Alexander Gutin, Victor Abkevich, Rebecca N Peterson, Chris Neff,[...]. Breast Cancer Res Treat 2018
43
2

Detection of minimal residual disease in B lymphoblastic leukemia by high-throughput sequencing of IGH.
David Wu, Ryan O Emerson, Anna Sherwood, Mignon L Loh, Anne Angiolillo, Bryan Howie, Jennifer Vogt, Mark Rieder, Ilan Kirsch, Christopher Carlson,[...]. Clin Cancer Res 2014
91
1

Nivolumab plus Ipilimumab in Lung Cancer with a High Tumor Mutational Burden.
Matthew D Hellmann, Tudor-Eliade Ciuleanu, Adam Pluzanski, Jong Seok Lee, Gregory A Otterson, Clarisse Audigier-Valette, Elisa Minenza, Helena Linardou, Sjaak Burgers, Pamela Salman,[...]. N Engl J Med 2018
1

Homologous Recombination Deficiency (HRD) Score Predicts Response to Platinum-Containing Neoadjuvant Chemotherapy in Patients with Triple-Negative Breast Cancer.
Melinda L Telli, Kirsten M Timms, Julia Reid, Bryan Hennessy, Gordon B Mills, Kristin C Jensen, Zoltan Szallasi, William T Barry, Eric P Winer, Nadine M Tung,[...]. Clin Cancer Res 2016
307
1

Measurable residual disease detection by high-throughput sequencing improves risk stratification for pediatric B-ALL.
Brent Wood, David Wu, Beryl Crossley, Yunfeng Dai, David Williamson, Charles Gawad, Michael J Borowitz, Meenakshi Devidas, Kelly W Maloney, Eric Larsen,[...]. Blood 2018
75
1

The clinical trial landscape in oncology and connectivity of somatic mutational profiles to targeted therapies.
Sara E Patterson, Rangjiao Liu, Cara M Statz, Daniel Durkin, Anuradha Lakshminarayana, Susan M Mockus. Hum Genomics 2016
54
1

Recommended principles and practices for validating clinical molecular pathology tests.
Lawrence Jennings, Vivianna M Van Deerlin, Margaret L Gulley. Arch Pathol Lab Med 2009
119
1

ClinVar: improving access to variant interpretations and supporting evidence.
Melissa J Landrum, Jennifer M Lee, Mark Benson, Garth R Brown, Chen Chao, Shanmuga Chitipiralla, Baoshan Gu, Jennifer Hart, Douglas Hoffman, Wonhee Jang,[...]. Nucleic Acids Res 2018
815
1


Accelerating Discovery of Functional Mutant Alleles in Cancer.
Matthew T Chang, Tripti Shrestha Bhattarai, Alison M Schram, Craig M Bielski, Mark T A Donoghue, Philip Jonsson, Debyani Chakravarty, Sarah Phillips, Cyriac Kandoth, Alexander Penson,[...]. Cancer Discov 2018
117
1

In silico prescription of anticancer drugs to cohorts of 28 tumor types reveals targeting opportunities.
Carlota Rubio-Perez, David Tamborero, Michael P Schroeder, Albert A Antolín, Jordi Deu-Pons, Christian Perez-Llamas, Jordi Mestres, Abel Gonzalez-Perez, Nuria Lopez-Bigas. Cancer Cell 2015
205
1

Optimization of Population Frequency Cutoffs for Filtering Common Germline Polymorphisms from Tumor-Only Next-Generation Sequencing Data.
Samantha N McNulty, Bijal A Parikh, Eric J Duncavage, Jonathan W Heusel, John D Pfeifer. J Mol Diagn 2019
4
25



Principles and Recommendations for Standardizing the Use of the Next-Generation Sequencing Variant File in Clinical Settings.
Ira M Lubin, Nazneen Aziz, Lawrence J Babb, Dennis Ballinger, Himani Bisht, Deanna M Church, Shaun Cordes, Karen Eilbeck, Fiona Hyland, Lisa Kalman,[...]. J Mol Diagn 2017
11
9

Microsatellite instability in prostate cancer by PCR or next-generation sequencing.
Jennifer A Hempelmann, Christina M Lockwood, Eric Q Konnick, Michael T Schweizer, Emmanuel S Antonarakis, Tamara L Lotan, Bruce Montgomery, Peter S Nelson, Nola Klemfuss, Stephen J Salipante,[...]. J Immunother Cancer 2018
45
2

BLAT--the BLAST-like alignment tool.
W James Kent. Genome Res 2002
1

Cancer Driver Log (CanDL): Catalog of Potentially Actionable Cancer Mutations.
Senthilkumar Damodaran, Jharna Miya, Esko Kautto, Eliot Zhu, Eric Samorodnitsky, Jharna Datta, Julie W Reeser, Sameek Roychowdhury. J Mol Diagn 2015
37
2

CADD: predicting the deleteriousness of variants throughout the human genome.
Philipp Rentzsch, Daniela Witten, Gregory M Cooper, Jay Shendure, Martin Kircher. Nucleic Acids Res 2019
773
1

Personalized cancer therapy-leveraging a knowledge base for clinical decision-making.
Ecaterina Ileana Dumbrava, Funda Meric-Bernstam. Cold Spring Harb Mol Case Stud 2018
26
3

Competency-based education for the molecular genetic pathology fellow: a report of the association for molecular pathology training and education committee.
Michael L Talbert, S Terence Dunn, Jennifer Hunt, David R Hillyard, Imran Mirza, Jan A Nowak, Vivianna Van Deerlin, Cindy L Vnencak-Jones. J Mol Diagn 2009
11
9

High-throughput multiplex HLA genotyping by next-generation sequencing using multi-locus individual tagging.
Philip K Ehrenberg, Aviva Geretz, Karen M Baldwin, Richard Apps, Victoria R Polonis, Merlin L Robb, Jerome H Kim, Nelson L Michael, Rasmi Thomas. BMC Genomics 2014
44
2

TP53 Variations in Human Cancers: New Lessons from the IARC TP53 Database and Genomics Data.
Liacine Bouaoun, Dmitriy Sonkin, Maude Ardin, Monica Hollstein, Graham Byrnes, Jiri Zavadil, Magali Olivier. Hum Mutat 2016
325
1

Next-Generation Sequencing Technologies.
W Richard McCombie, John D McPherson, Elaine R Mardis. Cold Spring Harb Perspect Med 2019
25
4

Memorial Sloan Kettering-Integrated Mutation Profiling of Actionable Cancer Targets (MSK-IMPACT): A Hybridization Capture-Based Next-Generation Sequencing Clinical Assay for Solid Tumor Molecular Oncology.
Donavan T Cheng, Talia N Mitchell, Ahmet Zehir, Ronak H Shah, Ryma Benayed, Aijazuddin Syed, Raghu Chandramohan, Zhen Yu Liu, Helen H Won, Sasinya N Scott,[...]. J Mol Diagn 2015
870
1

Correlation of tumor mutational burden and treatment outcomes in patients with colorectal cancer.
Sachin G Pai, Benedito A Carneiro, Young Kwang Chae, Ricardo L Costa, Aparna Kalyan, Hiral A Shah, Irene Helenowski, Alfred W Rademaker, Devalingam Mahalingam, Francis J Giles. J Gastrointest Oncol 2017
22
4

Integrative genomics viewer.
James T Robinson, Helga Thorvaldsdóttir, Wendy Winckler, Mitchell Guttman, Eric S Lander, Gad Getz, Jill P Mesirov. Nat Biotechnol 2011
1

DoCM: a database of curated mutations in cancer.
Benjamin J Ainscough, Malachi Griffith, Adam C Coffman, Alex H Wagner, Jason Kunisaki, Mayank Nk Choudhary, Joshua F McMichael, Robert S Fulton, Richard K Wilson, Obi L Griffith,[...]. Nat Methods 2016
45
2

GeneSplicer: a new computational method for splice site prediction.
M Pertea, X Lin, S L Salzberg. Nucleic Acids Res 2001
318
1

The international Genome sample resource (IGSR): A worldwide collection of genome variation incorporating the 1000 Genomes Project data.
Laura Clarke, Susan Fairley, Xiangqun Zheng-Bradley, Ian Streeter, Emily Perry, Ernesto Lowy, Anne-Marie Tassé, Paul Flicek. Nucleic Acids Res 2017
57
1

KEGG: kyoto encyclopedia of genes and genomes.
M Kanehisa, S Goto. Nucleic Acids Res 2000
1

Predicting the functional impact of protein mutations: application to cancer genomics.
Boris Reva, Yevgeniy Antipin, Chris Sander. Nucleic Acids Res 2011
1

Predicting the functional, molecular, and phenotypic consequences of amino acid substitutions using hidden Markov models.
Hashem A Shihab, Julian Gough, David N Cooper, Peter D Stenson, Gary L A Barker, Keith J Edwards, Ian N M Day, Tom R Gaunt. Hum Mutat 2013
582
1

Institutional implementation of clinical tumor profiling on an unselected cancer population.
Lynette M Sholl, Khanh Do, Priyanka Shivdasani, Ethan Cerami, Adrian M Dubuc, Frank C Kuo, Elizabeth P Garcia, Yonghui Jia, Phani Davineni, Ryan P Abo,[...]. JCI Insight 2016
200
1

Massively parallel sequencing: the next big thing in genetic medicine.
Tracy Tucker, Marco Marra, Jan M Friedman. Am J Hum Genet 2009
185
1


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.