A citation-based method for searching scientific literature

Kazuhide Asakawa, Maximiliano L Suster, Kanta Mizusawa, Saori Nagayoshi, Tomoya Kotani, Akihiro Urasaki, Yasuyuki Kishimoto, Masahiko Hibi, Koichi Kawakami. Proc Natl Acad Sci U S A 2008
Times Cited: 345







List of co-cited articles
563 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


High cleavage efficiency of a 2A peptide derived from porcine teschovirus-1 in human cell lines, zebrafish and mice.
Jin Hee Kim, Sang-Rok Lee, Li-Hua Li, Hye-Jeong Park, Jeong-Hoh Park, Kwang Youl Lee, Myeong-Kyu Kim, Boo Ahn Shin, Seok-Yong Choi. PLoS One 2011
684
5

Efficient mutagenesis by Cas9 protein-mediated oligonucleotide insertion and large-scale assessment of single-guide RNAs.
James A Gagnon, Eivind Valen, Summer B Thyme, Peng Huang, Laila Akhmetova, Andrea Pauli, Tessa G Montague, Steven Zimmerman, Constance Richter, Alexander F Schier. PLoS One 2014
457
5

Development and evolution of cerebellar neural circuits.
Mitsuhiro Hashimoto, Masahiko Hibi. Dev Growth Differ 2012
74
6

Optogenetics in a transparent animal: circuit function in the larval zebrafish.
Ruben Portugues, Kristen E Severi, Claire Wyart, Misha B Ahrens. Curr Opin Neurobiol 2013
59
8

Transcriptional silencing and reactivation in transgenic zebrafish.
Mary G Goll, Ryan Anderson, Didier Y R Stainier, Allan C Spradling, Marnie E Halpern. Genetics 2009
104
5

Optimization of a GCaMP calcium indicator for neural activity imaging.
Jasper Akerboom, Tsai-Wen Chen, Trevor J Wardill, Lin Tian, Jonathan S Marvin, Sevinç Mutlu, Nicole Carreras Calderón, Federico Esposti, Bart G Borghuis, Xiaonan Richard Sun,[...]. J Neurosci 2012
707
5

Vegfc Regulates Bipotential Precursor Division and Prox1 Expression to Promote Lymphatic Identity in Zebrafish.
Katarzyna Koltowska, Anne Karine Lagendijk, Cathy Pichol-Thievend, Johanna C Fischer, Mathias Francois, Elke A Ober, Alpha S Yap, Benjamin M Hogan. Cell Rep 2015
72
6

A truncation allele in vascular endothelial growth factor c reveals distinct modes of signaling during lymphatic and vascular development.
Jacques A Villefranc, Stefania Nicoli, Katie Bentley, Michael Jeltsch, Georgia Zarkada, John C Moore, Holger Gerhardt, Kari Alitalo, Nathan D Lawson. Development 2013
73
6

In vivo genome editing using a high-efficiency TALEN system.
Victoria M Bedell, Ying Wang, Jarryd M Campbell, Tanya L Poshusta, Colby G Starker, Randall G Krug, Wenfang Tan, Sumedha G Penheiter, Alvin C Ma, Anskar Y H Leung,[...]. Nature 2012
634
5

Optical control of zebrafish behavior with halorhodopsin.
Aristides B Arrenberg, Filippo Del Bene, Herwig Baier. Proc Natl Acad Sci U S A 2009
159
5

Highly efficient CRISPR/Cas9-mediated knock-in in zebrafish by homology-independent DNA repair.
Thomas O Auer, Karine Duroure, Anne De Cian, Jean-Paul Concordet, Filippo Del Bene. Genome Res 2014
376
5

Genetic compensation induced by deleterious mutations but not gene knockdowns.
Andrea Rossi, Zacharias Kontarakis, Claudia Gerri, Hendrik Nolte, Soraya Hölper, Marcus Krüger, Didier Y R Stainier. Nature 2015
662
5

Ubiquitous transgene expression and Cre-based recombination driven by the ubiquitin promoter in zebrafish.
Christian Mosimann, Charles K Kaufman, Pulin Li, Emily K Pugach, Owen J Tamplin, Leonard I Zon. Development 2011
227
5


Real-time 3D visualization of cellular rearrangements during cardiac valve formation.
Jenny Pestel, Radhan Ramadass, Sebastien Gauvrit, Christian Helker, Wiebke Herzog, Didier Y R Stainier. Development 2016
40
12

Vesicular glutamate transporter 3 is required for synaptic transmission in zebrafish hair cells.
Nikolaus Obholzer, Sean Wolfson, Josef G Trapani, Weike Mo, Alex Nechiporuk, Elisabeth Busch-Nentwich, Christoph Seiler, Samuel Sidi, Christian Söllner, Robert N Duncan,[...]. J Neurosci 2008
196
5

Zebrafish: Housing and husbandry recommendations.
Peter Aleström, Livia D'Angelo, Paul J Midtlyng, Daniel F Schorderet, Stefan Schulte-Merker, Frederic Sohm, Susan Warner. Lab Anim 2020
99
5

Efficient genome editing in zebrafish using a CRISPR-Cas system.
Woong Y Hwang, Yanfang Fu, Deepak Reyon, Morgan L Maeder, Shengdar Q Tsai, Jeffry D Sander, Randall T Peterson, J-R Joanna Yeh, J Keith Joung. Nat Biotechnol 2013
4

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.
Mark D Robinson, Davis J McCarthy, Gordon K Smyth. Bioinformatics 2010
4

Distinct phases of cardiomyocyte differentiation regulate growth of the zebrafish heart.
Emma de Pater, Linda Clijsters, Sara R Marques, Yi-Fan Lin, Zayra V Garavito-Aguilar, Deborah Yelon, Jeroen Bakkers. Development 2009
169
4

In vivo Wnt signaling tracing through a transgenic biosensor fish reveals novel activity domains.
Enrico Moro, Gunes Ozhan-Kizil, Alessandro Mongera, Dimitris Beis, Claudia Wierzbicki, Rodrigo M Young, Despina Bournele, Alice Domenichini, Leonardo E Valdivia, Lawrence Lum,[...]. Dev Biol 2012
149
4

Retinoic acid production by endocardium and epicardium is an injury response essential for zebrafish heart regeneration.
Kazu Kikuchi, Jennifer E Holdway, Robert J Major, Nicola Blum, Randall D Dahn, Gerrit Begemann, Kenneth D Poss. Dev Cell 2011
287
4

Feeding State Modulates Behavioral Choice and Processing of Prey Stimuli in the Zebrafish Tectum.
Alessandro Filosa, Alison J Barker, Marco Dal Maschio, Herwig Baier. Neuron 2016
66
6

A Visual Pathway for Looming-Evoked Escape in Larval Zebrafish.
Incinur Temizer, Joseph C Donovan, Herwig Baier, Julia L Semmelhack. Curr Biol 2015
106
4

Whole-brain activity mapping onto a zebrafish brain atlas.
Owen Randlett, Caroline L Wee, Eva A Naumann, Onyeka Nnaemeka, David Schoppik, James E Fitzgerald, Ruben Portugues, Alix M B Lacoste, Clemens Riegler, Florian Engert,[...]. Nat Methods 2015
181
4

Real-time visualization of neuronal activity during perception.
Akira Muto, Masamichi Ohkura, Gembu Abe, Junichi Nakai, Koichi Kawakami. Curr Biol 2013
132
4

Whole-brain activity maps reveal stereotyped, distributed networks for visuomotor behavior.
Ruben Portugues, Claudia E Feierstein, Florian Engert, Michael B Orger. Neuron 2014
144
4

NIH Image to ImageJ: 25 years of image analysis.
Caroline A Schneider, Wayne S Rasband, Kevin W Eliceiri. Nat Methods 2012
4


Hindbrain V2a neurons in the excitation of spinal locomotor circuits during zebrafish swimming.
Yukiko Kimura, Chie Satou, Shunji Fujioka, Wataru Shoji, Keiko Umeda, Toru Ishizuka, Hiromu Yawo, Shin-ichi Higashijima. Curr Biol 2013
95
4


Imaging of neural ensemble for the retrieval of a learned behavioral program.
Tazu Aoki, Masae Kinoshita, Ryo Aoki, Masakazu Agetsuma, Hidenori Aizawa, Masako Yamazaki, Mikako Takahoko, Ryunosuke Amo, Akiko Arata, Shin-ichi Higashijima,[...]. Neuron 2013
50
8

A structural and functional ground plan for neurons in the hindbrain of zebrafish.
Amina Kinkhabwala, Michael Riley, Minoru Koyama, Joost Monen, Chie Satou, Yukiko Kimura, Shin-Ichi Higashijima, Joseph Fetcho. Proc Natl Acad Sci U S A 2011
128
4

In vivo imaging of synapse formation on a growing dendritic arbor.
Cristopher M Niell, Martin P Meyer, Stephen J Smith. Nat Neurosci 2004
289
4

The dorsal pallium in zebrafish, Danio rerio (Cyprinidae, Teleostei).
Thomas Mueller, Zhiqiang Dong, Michael A Berberoglu, Su Guo. Brain Res 2011
118
4

Live imaging of lymphatic development in the zebrafish.
Karina Yaniv, Sumio Isogai, Daniel Castranova, Louis Dye, Jiro Hitomi, Brant M Weinstein. Nat Med 2006
302
4

Lymphatic vessels arise from specialized angioblasts within a venous niche.
J Nicenboim, G Malkinson, T Lupo, L Asaf, Y Sela, O Mayseless, L Gibbs-Bar, N Senderovich, T Hashimshony, M Shin,[...]. Nature 2015
126
4


Etv2 and fli1b function together as key regulators of vasculogenesis and angiogenesis.
Michael P Craig, Viktorija Grajevskaja, Hsin-Kai Liao, Jorune Balciuniene, Stephen C Ekker, Joo-Seop Park, Jeffrey J Essner, Darius Balciunas, Saulius Sumanas. Arterioscler Thromb Vasc Biol 2015
38
10



Trimmomatic: a flexible trimmer for Illumina sequence data.
Anthony M Bolger, Marc Lohse, Bjoern Usadel. Bioinformatics 2014
4

Flow-Dependent Endothelial YAP Regulation Contributes to Vessel Maintenance.
Hiroyuki Nakajima, Kimiko Yamamoto, Sobhika Agarwala, Kenta Terai, Hajime Fukui, Shigetomo Fukuhara, Koji Ando, Takahiro Miyazaki, Yasuhiro Yokota, Etienne Schmelzer,[...]. Dev Cell 2017
129
4

Cloche, an early acting zebrafish gene, is required by both the endothelial and hematopoietic lineages.
D Y Stainier, B M Weinstein, H W Detrich, L I Zon, M C Fishman. Development 1995
396
4

Cloche is a bHLH-PAS transcription factor that drives haemato-vascular specification.
Sven Reischauer, Oliver A Stone, Alethia Villasenor, Neil Chi, Suk-Won Jin, Marcel Martin, Miler T Lee, Nana Fukuda, Michele Marass, Alec Witty,[...]. Nature 2016
79
5

Deep brain photoreceptors control light-seeking behavior in zebrafish larvae.
António M Fernandes, Kandice Fero, Aristides B Arrenberg, Sadie A Bergeron, Wolfgang Driever, Harold A Burgess. Curr Biol 2012
145
4

Precise Editing of the Zebrafish Genome Made Simple and Efficient.
Kazuyuki Hoshijima, Michael J Jurynec, David Jonah Grunwald. Dev Cell 2016
102
4

A topographic map of recruitment in spinal cord.
David L McLean, Jingyi Fan, Shin-ichi Higashijima, Melina E Hale, Joseph R Fetcho. Nature 2007
231
4

Semaphorin-PlexinD1 signaling limits angiogenic potential via the VEGF decoy receptor sFlt1.
Tomasz Zygmunt, Carl Michael Gay, Jordan Blondelle, Manvendra K Singh, Kathleen McCrone Flaherty, Paula Casey Means, Lukas Herwig, Alice Krudewig, Heinz-Georg Belting, Markus Affolter,[...]. Dev Cell 2011
107
4

Distinct cellular mechanisms of blood vessel fusion in the zebrafish embryo.
Lukas Herwig, Yannick Blum, Alice Krudewig, Elin Ellertsdottir, Anna Lenard, Heinz-Georg Belting, Markus Affolter. Curr Biol 2011
148
4


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.