A citation-based method for searching scientific literature

Jeremy Freeman, Nikita Vladimirov, Takashi Kawashima, Yu Mu, Nicholas J Sofroniew, Davis V Bennett, Joshua Rosen, Chao-Tsung Yang, Loren L Looger, Misha B Ahrens. Nat Methods 2014
Times Cited: 143







List of co-cited articles
702 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Lattice light-sheet microscopy: imaging molecules to embryos at high spatiotemporal resolution.
Bi-Chang Chen, Wesley R Legant, Kai Wang, Lin Shao, Daniel E Milkie, Michael W Davidson, Chris Janetopoulos, Xufeng S Wu, John A Hammer, Zhe Liu,[...]. Science 2014
887
6


Swept confocally-aligned planar excitation (SCAPE) microscopy for high speed volumetric imaging of behaving organisms.
Matthew B Bouchard, Venkatakaushik Voleti, César S Mendes, Clay Lacefield, Wesley B Grueber, Richard S Mann, Randy M Bruno, Elizabeth M C Hillman. Nat Photonics 2015
242
6

A structural and functional ground plan for neurons in the hindbrain of zebrafish.
Amina Kinkhabwala, Michael Riley, Minoru Koyama, Joost Monen, Chie Satou, Yukiko Kimura, Shin-Ichi Higashijima, Joseph Fetcho. Proc Natl Acad Sci U S A 2011
130
6

Simultaneous all-optical manipulation and recording of neural circuit activity with cellular resolution in vivo.
Adam M Packer, Lloyd E Russell, Henry W P Dalgleish, Michael Häusser. Nat Methods 2015
278
6



ScanImage: flexible software for operating laser scanning microscopes.
Thomas A Pologruto, Bernardo L Sabatini, Karel Svoboda. Biomed Eng Online 2003
747
6

Whole-brain serial-section electron microscopy in larval zebrafish.
David Grant Colburn Hildebrand, Marcelo Cicconet, Russel Miguel Torres, Woohyuk Choi, Tran Minh Quan, Jungmin Moon, Arthur Willis Wetzel, Andrew Scott Champion, Brett Jesse Graham, Owen Randlett,[...]. Nature 2017
122
6

NoRMCorre: An online algorithm for piecewise rigid motion correction of calcium imaging data.
Eftychios A Pnevmatikakis, Andrea Giovannucci. J Neurosci Methods 2017
223
6

CaImAn an open source tool for scalable calcium imaging data analysis.
Andrea Giovannucci, Johannes Friedrich, Pat Gunn, Jérémie Kalfon, Brandon L Brown, Sue Ann Koay, Jiannis Taxidis, Farzaneh Najafi, Jeffrey L Gauthier, Pengcheng Zhou,[...]. Elife 2019
178
6

A Cellular-Resolution Atlas of the Larval Zebrafish Brain.
Michael Kunst, Eva Laurell, Nouwar Mokayes, Anna Kramer, Fumi Kubo, António M Fernandes, Dominique Förster, Marco Dal Maschio, Herwig Baier. Neuron 2019
68
8

Structure of the Zebrafish Locomotor Repertoire Revealed with Unsupervised Behavioral Clustering.
João C Marques, Simone Lackner, Rita Félix, Michael B Orger. Curr Biol 2018
82
7

Glia Accumulate Evidence that Actions Are Futile and Suppress Unsuccessful Behavior.
Yu Mu, Davis V Bennett, Mikail Rubinov, Sujatha Narayan, Chao-Tsung Yang, Masashi Tanimoto, Brett D Mensh, Loren L Looger, Misha B Ahrens. Cell 2019
91
6

Neural population dynamics during reaching.
Mark M Churchland, John P Cunningham, Matthew T Kaufman, Justin D Foster, Paul Nuyujukian, Stephen I Ryu, Krishna V Shenoy. Nature 2012
586
5



Real-time visualization of neuronal activity during perception.
Akira Muto, Masamichi Ohkura, Gembu Abe, Junichi Nakai, Koichi Kawakami. Curr Biol 2013
139
5


Long-term dynamics of CA1 hippocampal place codes.
Yaniv Ziv, Laurie D Burns, Eric D Cocker, Elizabeth O Hamel, Kunal K Ghosh, Lacey J Kitch, Abbas El Gamal, Mark J Schnitzer. Nat Neurosci 2013
501
5

The dorsal raphe modulates sensory responsiveness during arousal in zebrafish.
Tohei Yokogawa, Markus C Hannan, Harold A Burgess. J Neurosci 2012
80
6

Measuring and interpreting neuronal correlations.
Marlene R Cohen, Adam Kohn. Nat Neurosci 2011
554
5


Whole-animal functional and developmental imaging with isotropic spatial resolution.
Raghav K Chhetri, Fernando Amat, Yinan Wan, Burkhard Höckendorf, William C Lemon, Philipp J Keller. Nat Methods 2015
119
5

Inverted selective plane illumination microscopy (iSPIM) enables coupled cell identity lineaging and neurodevelopmental imaging in Caenorhabditis elegans.
Yicong Wu, Alireza Ghitani, Ryan Christensen, Anthony Santella, Zhuo Du, Gary Rondeau, Zhirong Bao, Daniel Colón-Ramos, Hari Shroff. Proc Natl Acad Sci U S A 2011
170
5

Transparent adult zebrafish as a tool for in vivo transplantation analysis.
Richard Mark White, Anna Sessa, Christopher Burke, Teresa Bowman, Jocelyn LeBlanc, Craig Ceol, Caitlin Bourque, Michael Dovey, Wolfram Goessling, Caroline Erter Burns,[...]. Cell Stem Cell 2008
752
5

Genome-wide atlas of gene expression in the adult mouse brain.
Ed S Lein, Michael J Hawrylycz, Nancy Ao, Mikael Ayres, Amy Bensinger, Amy Bernard, Andrew F Boe, Mark S Boguski, Kevin S Brockway, Emi J Byrnes,[...]. Nature 2007
5


A Cellular Resolution Map of Barrel Cortex Activity during Tactile Behavior.
Simon P Peron, Jeremy Freeman, Vijay Iyer, Caiying Guo, Karel Svoboda. Neuron 2015
154
5

Whole-brain functional imaging with two-photon light-sheet microscopy.
Sébastien Wolf, Willy Supatto, Georges Debrégeas, Pierre Mahou, Sergei G Kruglik, Jean-Marc Sintes, Emmanuel Beaurepaire, Raphaël Candelier. Nat Methods 2015
68
7

Descending control of swim posture by a midbrain nucleus in zebrafish.
Tod R Thiele, Joseph C Donovan, Herwig Baier. Neuron 2014
76
6

High-speed recording of neural spikes in awake mice and flies with a fluorescent voltage sensor.
Yiyang Gong, Cheng Huang, Jin Zhong Li, Benjamin F Grewe, Yanping Zhang, Stephan Eismann, Mark J Schnitzer. Science 2015
246
5

Fast online deconvolution of calcium imaging data.
Johannes Friedrich, Pengcheng Zhou, Liam Paninski. PLoS Comput Biol 2017
137
5


Neural control and modulation of swimming speed in the larval zebrafish.
Kristen E Severi, Ruben Portugues, João C Marques, Donald M O'Malley, Michael B Orger, Florian Engert. Neuron 2014
107
5


NIH Image to ImageJ: 25 years of image analysis.
Caroline A Schneider, Wayne S Rasband, Kevin W Eliceiri. Nat Methods 2012
5

Genetic targeting and anatomical registration of neuronal populations in the zebrafish brain with a new set of BAC transgenic tools.
Dominique Förster, Irene Arnold-Ammer, Eva Laurell, Alison J Barker, António M Fernandes, Karin Finger-Baier, Alessandro Filosa, Thomas O Helmbrecht, Yvonne Kölsch, Enrico Kühn,[...]. Sci Rep 2017
37
13

Accurate spike estimation from noisy calcium signals for ultrafast three-dimensional imaging of large neuronal populations in vivo.
Thomas Deneux, Attila Kaszas, Gergely Szalay, Gergely Katona, Tamás Lakner, Amiram Grinvald, Balázs Rózsa, Ivo Vanzetta. Nat Commun 2016
88
5

Brain-wide circuit interrogation at the cellular level guided by online analysis of neuronal function.
Nikita Vladimirov, Chen Wang, Burkhard Höckendorf, Avinash Pujala, Masashi Tanimoto, Yu Mu, Chao-Tsung Yang, Jason D Wittenbach, Jeremy Freeman, Stephan Preibisch,[...]. Nat Methods 2018
18
27

Bright and photostable chemigenetic indicators for extended in vivo voltage imaging.
Ahmed S Abdelfattah, Takashi Kawashima, Amrita Singh, Ondrej Novak, Hui Liu, Yichun Shuai, Yi-Chieh Huang, Luke Campagnola, Stephanie C Seeman, Jianing Yu,[...]. Science 2019
166
5

Cerebellar Neurodynamics Predict Decision Timing and Outcome on the Single-Trial Level.
Qian Lin, Jason Manley, Magdalena Helmreich, Friederike Schlumm, Jennifer M Li, Drew N Robson, Florian Engert, Alexander Schier, Tobias Nöbauer, Alipasha Vaziri. Cell 2020
28
17

Millisecond-timescale, genetically targeted optical control of neural activity.
Edward S Boyden, Feng Zhang, Ernst Bamberg, Georg Nagel, Karl Deisseroth. Nat Neurosci 2005
4

Transgenic strategies for combinatorial expression of fluorescent proteins in the nervous system.
Jean Livet, Tamily A Weissman, Hyuno Kang, Ryan W Draft, Ju Lu, Robyn A Bennis, Joshua R Sanes, Jeff W Lichtman. Nature 2007
4

Detecting cells using non-negative matrix factorization on calcium imaging data.
Ryuichi Maruyama, Kazuma Maeda, Hajime Moroda, Ichiro Kato, Masashi Inoue, Hiroyoshi Miyakawa, Toru Aonishi. Neural Netw 2014
53
7

Choice-specific sequences in parietal cortex during a virtual-navigation decision task.
Christopher D Harvey, Philip Coen, David W Tank. Nature 2012
504
4

Large-scale imaging in small brains.
Misha B Ahrens, Florian Engert. Curr Opin Neurobiol 2015
35
11

The WU-Minn Human Connectome Project: an overview.
David C Van Essen, Stephen M Smith, Deanna M Barch, Timothy E J Behrens, Essa Yacoub, Kamil Ugurbil. Neuroimage 2013
4


Sensorimotor gating in larval zebrafish.
Harold A Burgess, Michael Granato. J Neurosci 2007
289
4


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.