A citation-based method for searching scientific literature

Lindsey W Plasschaert, Rapolas Žilionis, Rayman Choo-Wing, Virginia Savova, Judith Knehr, Guglielmo Roma, Allon M Klein, Aron B Jaffe. Nature 2018
Times Cited: 387







List of co-cited articles
935 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Injury induces direct lineage segregation of functionally distinct airway basal stem/progenitor cell subpopulations.
Ana Pardo-Saganta, Brandon M Law, Purushothama Rao Tata, Jorge Villoria, Borja Saez, Hongmei Mou, Rui Zhao, Jayaraj Rajagopal. Cell Stem Cell 2015
116
6

Myoepithelial Cells of Submucosal Glands Can Function as Reserve Stem Cells to Regenerate Airways after Injury.
Aleksandra Tata, Yoshihiko Kobayashi, Ryan D Chow, Jasmine Tran, Avani Desai, Abdull J Massri, Timothy J McCord, Michael Dee Gunn, Purushothama Rao Tata. Cell Stem Cell 2018
59
10

Recruited Monocytes and Type 2 Immunity Promote Lung Regeneration following Pneumonectomy.
Andrew J Lechner, Ian H Driver, Jinwoo Lee, Carmen M Conroy, Abigail Nagle, Richard M Locksley, Jason R Rock. Cell Stem Cell 2017
108
6

Identification of bronchioalveolar stem cells in normal lung and lung cancer.
Carla F Bender Kim, Erica L Jackson, Amber E Woolfenden, Sharon Lawrence, Imran Babar, Sinae Vogel, Denise Crowley, Roderick T Bronson, Tyler Jacks. Cell 2005
6

Rare Pulmonary Neuroendocrine Cells Are Stem Cells Regulated by Rb, p53, and Notch.
Youcef Ouadah, Enrique R Rojas, Daniel P Riordan, Sarah Capostagno, Christin S Kuo, Mark A Krasnow. Cell 2019
62
9

Distinct Mesenchymal Lineages and Niches Promote Epithelial Self-Renewal and Myofibrogenesis in the Lung.
Jarod A Zepp, William J Zacharias, David B Frank, Christina A Cavanaugh, Su Zhou, Michael P Morley, Edward E Morrisey. Cell 2017
237
6

Single-Cell Reconstruction of Human Basal Cell Diversity in Normal and Idiopathic Pulmonary Fibrosis Lungs.
Gianni Carraro, Apoorva Mulay, Changfu Yao, Takako Mizuno, Bindu Konda, Martin Petrov, Daniel Lafkas, Joe R Arron, Cory M Hogaboam, Peter Chen,[...]. Am J Respir Crit Care Med 2020
38
15

Airway acidification initiates host defense abnormalities in cystic fibrosis mice.
Viral S Shah, David K Meyerholz, Xiao Xiao Tang, Leah Reznikov, Mahmoud Abou Alaiwa, Sarah E Ernst, Philip H Karp, Christine L Wohlford-Lenane, Kristopher P Heilmann, Mariah R Leidinger,[...]. Science 2016
183
6

A single-cell survey of the small intestinal epithelium.
Adam L Haber, Moshe Biton, Noga Rogel, Rebecca H Herbst, Karthik Shekhar, Christopher Smillie, Grace Burgin, Toni M Delorey, Michael R Howitt, Yarden Katz,[...]. Nature 2017
589
6

Pulmonary neuroendocrine cells amplify allergic asthma responses.
Pengfei Sui, Darin L Wiesner, Jinhao Xu, Yan Zhang, Jinwoo Lee, Steven Van Dyken, Amber Lashua, Chuyue Yu, Bruce S Klein, Richard M Locksley,[...]. Science 2018
158
6

The cysteinyl leukotriene 3 receptor regulates expansion of IL-25-producing airway brush cells leading to type 2 inflammation.
Lora G Bankova, Daniel F Dwyer, Eri Yoshimoto, Saltanat Ualiyeva, John W McGinty, Hannah Raff, Jakob von Moltke, Yoshihide Kanaoka, K Frank Austen, Nora A Barrett. Sci Immunol 2018
74
8


Single-cell RNA-seq reveals ectopic and aberrant lung-resident cell populations in idiopathic pulmonary fibrosis.
Taylor S Adams, Jonas C Schupp, Sergio Poli, Ehab A Ayaub, Nir Neumark, Farida Ahangari, Sarah G Chu, Benjamin A Raby, Giuseppe DeIuliis, Michael Januszyk,[...]. Sci Adv 2020
175
6

Single-cell RNA sequencing identifies diverse roles of epithelial cells in idiopathic pulmonary fibrosis.
Yan Xu, Takako Mizuno, Anusha Sridharan, Yina Du, Minzhe Guo, Jie Tang, Kathryn A Wikenheiser-Brokamp, Anne-Karina T Perl, Vincent A Funari, Jason J Gokey,[...]. JCI Insight 2016
276
6

Ontogeny and Biology of Human Small Airway Epithelial Club Cells.
Wu-Lin Zuo, Sushila A Shenoy, Sheng Li, Sarah L O'Beirne, Yael Strulovici-Barel, Philip L Leopold, Guoqing Wang, Michelle R Staudt, Matthew S Walters, Christopher Mason,[...]. Am J Respir Crit Care Med 2018
43
13

RNA velocity of single cells.
Gioele La Manno, Ruslan Soldatov, Amit Zeisel, Emelie Braun, Hannah Hochgerner, Viktor Petukhov, Katja Lidschreiber, Maria E Kastriti, Peter Lönnerberg, Alessandro Furlan,[...]. Nature 2018
883
6

Imbalanced Host Response to SARS-CoV-2 Drives Development of COVID-19.
Daniel Blanco-Melo, Benjamin E Nilsson-Payant, Wen-Chun Liu, Skyler Uhl, Daisy Hoagland, Rasmus Møller, Tristan X Jordan, Kohei Oishi, Maryline Panis, David Sachs,[...]. Cell 2020
6

Capillary cell-type specialization in the alveolus.
Astrid Gillich, Fan Zhang, Colleen G Farmer, Kyle J Travaglini, Serena Y Tan, Mingxia Gu, Bin Zhou, Jeffrey A Feinstein, Mark A Krasnow, Ross J Metzger. Nature 2020
45
13

Ionocytes and CFTR Chloride Channel Expression in Normal and Cystic Fibrosis Nasal and Bronchial Epithelial Cells.
Paolo Scudieri, Ilaria Musante, Arianna Venturini, Daniela Guidone, Michele Genovese, Federico Cresta, Emanuela Caci, Alessandro Palleschi, Marco Poeta, Francesca Santamaria,[...]. Cells 2020
14
42

The single-cell transcriptional landscape of mammalian organogenesis.
Junyue Cao, Malte Spielmann, Xiaojie Qiu, Xingfan Huang, Daniel M Ibrahim, Andrew J Hill, Fan Zhang, Stefan Mundlos, Lena Christiansen, Frank J Steemers,[...]. Nature 2019
631
6

Notch2 is required for inflammatory cytokine-driven goblet cell metaplasia in the lung.
Henry Danahay, Angelica D Pessotti, Julie Coote, Brooke E Montgomery, Donghui Xia, Aaron Wilson, Haidi Yang, Zhao Wang, Luke Bevan, Chris Thomas,[...]. Cell Rep 2015
121
5

In vitro generation of human pluripotent stem cell derived lung organoids.
Briana R Dye, David R Hill, Michael A H Ferguson, Yu-Hwai Tsai, Melinda S Nagy, Rachel Dyal, James M Wells, Christopher N Mayhew, Roy Nattiv, Ophir D Klein,[...]. Elife 2015
392
5

Differentiation of Human Pluripotent Stem Cells into Functional Lung Alveolar Epithelial Cells.
Anjali Jacob, Michael Morley, Finn Hawkins, Katherine B McCauley, J C Jean, Hillary Heins, Cheng-Lun Na, Timothy E Weaver, Marall Vedaie, Killian Hurley,[...]. Cell Stem Cell 2017
200
5

Human embryonic lung epithelial tips are multipotent progenitors that can be expanded in vitro as long-term self-renewing organoids.
Marko Z Nikolić, Oriol Caritg, Quitz Jeng, Jo-Anne Johnson, Dawei Sun, Kate J Howell, Jane L Brady, Usua Laresgoiti, George Allen, Richard Butler,[...]. Elife 2017
111
5

Number and proliferation of basal and parabasal cells in normal human airway epithelium.
J E Boers, A W Ambergen, F B Thunnissen. Am J Respir Crit Care Med 1998
164
5

Long-term culture and cloning of primary human bronchial basal cells that maintain multipotent differentiation capacity and CFTR channel function.
Jennifer R Peters-Hall, Melissa L Coquelin, Michael J Torres, Ryan LaRanger, Busola R Alabi, Sei Sho, Jose F Calva-Moreno, Philip J Thomas, Jerry W Shay. Am J Physiol Lung Cell Mol Physiol 2018
36
13

ROCK inhibitor and feeder cells induce the conditional reprogramming of epithelial cells.
Xuefeng Liu, Virginie Ory, Sandra Chapman, Hang Yuan, Chris Albanese, Bhaskar Kallakury, Olga A Timofeeva, Caitlin Nealon, Aleksandra Dakic, Vera Simic,[...]. Am J Pathol 2012
500
5

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.
Aravind Subramanian, Pablo Tamayo, Vamsi K Mootha, Sayan Mukherjee, Benjamin L Ebert, Michael A Gillette, Amanda Paulovich, Scott L Pomeroy, Todd R Golub, Eric S Lander,[...]. Proc Natl Acad Sci U S A 2005
5

Cellular crosstalk in the development and regeneration of the respiratory system.
Jarod A Zepp, Edward E Morrisey. Nat Rev Mol Cell Biol 2019
53
9

Spatial-Temporal Lineage Restrictions of Embryonic p63+ Progenitors Establish Distinct Stem Cell Pools in Adult Airways.
Ying Yang, Paul Riccio, Michael Schotsaert, Munemasa Mori, Jining Lu, Dong-Kee Lee, Adolfo García-Sastre, Jianming Xu, Wellington V Cardoso. Dev Cell 2018
79
6

Submucosal Gland Myoepithelial Cells Are Reserve Stem Cells That Can Regenerate Mouse Tracheal Epithelium.
Thomas J Lynch, Preston J Anderson, Pavana G Rotti, Scott R Tyler, Adrianne K Crooke, Soon H Choi, Daniel T Montoro, Carolyn L Silverman, Weam Shahin, Rui Zhao,[...]. Cell Stem Cell 2018
47
10

In Vitro Induction and In Vivo Engraftment of Lung Bud Tip Progenitor Cells Derived from Human Pluripotent Stem Cells.
Alyssa J Miller, David R Hill, Melinda S Nagy, Yoshiro Aoki, Briana R Dye, Alana M Chin, Sha Huang, Felix Zhu, Eric S White, Vibha Lama,[...]. Stem Cell Reports 2018
87
5

Niche-mediated BMP/SMAD signaling regulates lung alveolar stem cell proliferation and differentiation.
Mei-I Chung, Melissa Bujnis, Christina E Barkauskas, Yoshihiko Kobayashi, Brigid L M Hogan. Development 2018
91
5

BMP signaling and cellular dynamics during regeneration of airway epithelium from basal progenitors.
Tomomi Tadokoro, Xia Gao, Charles C Hong, Danielle Hotten, Brigid L M Hogan. Development 2016
78
6

Bronchioalveolar stem cells are a main source for regeneration of distal lung epithelia in vivo.
Isabelle Salwig, Birgit Spitznagel, Ana Ivonne Vazquez-Armendariz, Keynoosh Khalooghi, Stefan Guenther, Susanne Herold, Marten Szibor, Thomas Braun. EMBO J 2019
68
7

The in vitro generation of lung and airway progenitor cells from human pluripotent stem cells.
Sarah X L Huang, Michael D Green, Ana Toste de Carvalho, Melanie Mumau, Ya-Wen Chen, Sunita L D'Souza, Hans-Willem Snoeck. Nat Protoc 2015
107
5

Prospective isolation of NKX2-1-expressing human lung progenitors derived from pluripotent stem cells.
Finn Hawkins, Philipp Kramer, Anjali Jacob, Ian Driver, Dylan C Thomas, Katherine B McCauley, Nicholas Skvir, Ana M Crane, Anita A Kurmann, Anthony N Hollenberg,[...]. J Clin Invest 2017
91
5

Regenerative lineages and immune-mediated pruning in lung cancer metastasis.
Ashley M Laughney, Jing Hu, Nathaniel R Campbell, Samuel F Bakhoum, Manu Setty, Vincent-Philippe Lavallée, Yubin Xie, Ignas Masilionis, Ambrose J Carr, Sanjay Kottapalli,[...]. Nat Med 2020
104
5

MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data.
Greg Finak, Andrew McDavid, Masanao Yajima, Jingyuan Deng, Vivian Gersuk, Alex K Shalek, Chloe K Slichter, Hannah W Miller, M Juliana McElrath, Martin Prlic,[...]. Genome Biol 2015
766
5

Cholinergic chemosensory cells in the trachea regulate breathing.
Gabriela Krasteva, Brendan J Canning, Petra Hartmann, Tibor Z Veres, Tamara Papadakis, Christian Mühlfeld, Kirstin Schliecker, Yvonne N Tallini, Armin Braun, Holger Hackstein,[...]. Proc Natl Acad Sci U S A 2011
174
5

POU2F3 is a master regulator of a tuft cell-like variant of small cell lung cancer.
Yu-Han Huang, Olaf Klingbeil, Xue-Yan He, Xiaoli S Wu, Gayatri Arun, Bin Lu, Tim D D Somerville, Joseph P Milazzo, John E Wilkinson, Osama E Demerdash,[...]. Genes Dev 2018
107
5

Airway brush cells generate cysteinyl leukotrienes through the ATP sensor P2Y2.
Saltanat Ualiyeva, Nils Hallen, Yoshihide Kanaoka, Carola Ledderose, Ichiro Matsumoto, Wolfgang G Junger, Nora A Barrett, Lora G Bankova. Sci Immunol 2020
33
15

Tuft Cells-Systemically Dispersed Sensory Epithelia Integrating Immune and Neural Circuitry.
Claire E O'Leary, Christoph Schneider, Richard M Locksley. Annu Rev Immunol 2019
53
9

Allergic inflammatory memory in human respiratory epithelial progenitor cells.
Jose Ordovas-Montanes, Daniel F Dwyer, Sarah K Nyquist, Kathleen M Buchheit, Marko Vukovic, Chaarushena Deb, Marc H Wadsworth, Travis K Hughes, Samuel W Kazer, Eri Yoshimoto,[...]. Nature 2018
169
5

Visualization and analysis of gene expression in tissue sections by spatial transcriptomics.
Patrik L Ståhl, Fredrik Salmén, Sanja Vickovic, Anna Lundmark, José Fernández Navarro, Jens Magnusson, Stefania Giacomello, Michaela Asp, Jakub O Westholm, Mikael Huss,[...]. Science 2016
722
5

CellPhoneDB: inferring cell-cell communication from combined expression of multi-subunit ligand-receptor complexes.
Mirjana Efremova, Miquel Vento-Tormo, Sarah A Teichmann, Roser Vento-Tormo. Nat Protoc 2020
420
5

The Human Cell Atlas.
Aviv Regev, Sarah A Teichmann, Eric S Lander, Ido Amit, Christophe Benoist, Ewan Birney, Bernd Bodenmiller, Peter Campbell, Piero Carninci, Menna Clatworthy,[...]. Elife 2017
787
5

Role of f-box factor foxj1 in differentiation of ciliated airway epithelial cells.
Yingjian You, Tao Huang, Edward J Richer, Jens-Erik Harboe Schmidt, Joseph Zabner, Zea Borok, Steven L Brody. Am J Physiol Lung Cell Mol Physiol 2004
137
5

Human lung development: recent progress and new challenges.
Marko Z Nikolić, Dawei Sun, Emma L Rawlins. Development 2018
60
8


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.