A citation-based method for searching scientific literature

Alyssa J Miller, Briana R Dye, Daysha Ferrer-Torres, David R Hill, Arend W Overeem, Lonnie D Shea, Jason R Spence. Nat Protoc 2019
Times Cited: 142







List of co-cited articles
1348 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Three-Dimensional Human Alveolar Stem Cell Culture Models Reveal Infection Response to SARS-CoV-2.
Jeonghwan Youk, Taewoo Kim, Kelly V Evans, Young-Il Jeong, Yongsuk Hur, Seon Pyo Hong, Je Hyoung Kim, Kijong Yi, Su Yeon Kim, Kwon Joong Na,[...]. Cell Stem Cell 2020
94
11

Dual SMAD Signaling Inhibition Enables Long-Term Expansion of Diverse Epithelial Basal Cells.
Hongmei Mou, Vladimir Vinarsky, Purushothama Rao Tata, Karissa Brazauskas, Soon H Choi, Adrianne K Crooke, Bing Zhang, George M Solomon, Brett Turner, Hermann Bihler,[...]. Cell Stem Cell 2016
194
10

In Vitro Disease Modeling of Hermansky-Pudlak Syndrome Type 2 Using Human Induced Pluripotent Stem Cell-Derived Alveolar Organoids.
Yohei Korogi, Shimpei Gotoh, Satoshi Ikeo, Yuki Yamamoto, Naoyuki Sone, Koji Tamai, Satoshi Konishi, Tadao Nagasaki, Hisako Matsumoto, Isao Ito,[...]. Stem Cell Reports 2019
41
24

Generation of multipotent lung and airway progenitors from mouse ESCs and patient-specific cystic fibrosis iPSCs.
Hongmei Mou, Rui Zhao, Richard Sherwood, Tim Ahfeldt, Allen Lapey, John Wain, Leonard Sicilian, Konstantin Izvolsky, Kiran Musunuru, Chad Cowan,[...]. Cell Stem Cell 2012
211
10

Derivation of Airway Basal Stem Cells from Human Pluripotent Stem Cells.
Finn J Hawkins, Shingo Suzuki, Mary Lou Beermann, Cristina Barillà, Ruobing Wang, Carlos Villacorta-Martin, Andrew Berical, J C Jean, Jake Le Suer, Taylor Matte,[...]. Cell Stem Cell 2021
56
17

Derivation of self-renewing lung alveolar epithelial type II cells from human pluripotent stem cells.
Anjali Jacob, Marall Vedaie, David A Roberts, Dylan C Thomas, Carlos Villacorta-Martin, Konstantinos-Dionysios Alysandratos, Finn Hawkins, Darrell N Kotton. Nat Protoc 2019
67
14

Engineered human pluripotent-stem-cell-derived intestinal tissues with a functional enteric nervous system.
Michael J Workman, Maxime M Mahe, Stephen Trisno, Holly M Poling, Carey L Watson, Nambirajan Sundaram, Ching-Fang Chang, Jacqueline Schiesser, Philippe Aubert, Edouard G Stanley,[...]. Nat Med 2017
305
10

Organoid cultures derived from patients with advanced prostate cancer.
Dong Gao, Ian Vela, Andrea Sboner, Phillip J Iaquinta, Wouter R Karthaus, Anuradha Gopalan, Catherine Dowling, Jackline N Wanjala, Eva A Undvall, Vivek K Arora,[...]. Cell 2014
824
10

A Human Pluripotent Stem Cell-based Platform to Study SARS-CoV-2 Tropism and Model Virus Infection in Human Cells and Organoids.
Liuliu Yang, Yuling Han, Benjamin E Nilsson-Payant, Vikas Gupta, Pengfei Wang, Xiaohua Duan, Xuming Tang, Jiajun Zhu, Zeping Zhao, Fabrice Jaffré,[...]. Cell Stem Cell 2020
358
10

Prospective derivation of a living organoid biobank of colorectal cancer patients.
Marc van de Wetering, Hayley E Francies, Joshua M Francis, Gergana Bounova, Francesco Iorio, Apollo Pronk, Winan van Houdt, Joost van Gorp, Amaro Taylor-Weiner, Lennart Kester,[...]. Cell 2015
10

Human primary liver cancer-derived organoid cultures for disease modeling and drug screening.
Laura Broutier, Gianmarco Mastrogiovanni, Monique Ma Verstegen, Hayley E Francies, Lena Morrill Gavarró, Charles R Bradshaw, George E Allen, Robert Arnes-Benito, Olga Sidorova, Marcia P Gaspersz,[...]. Nat Med 2017
531
9

An in vivo model of functional and vascularized human brain organoids.
Abed AlFatah Mansour, J Tiago Gonçalves, Cooper W Bloyd, Hao Li, Sarah Fernandes, Daphne Quang, Stephen Johnston, Sarah L Parylak, Xin Jin, Fred H Gage. Nat Biotechnol 2018
467
9

Anatomically and Functionally Distinct Lung Mesenchymal Populations Marked by Lgr5 and Lgr6.
Joo-Hyeon Lee, Tuomas Tammela, Matan Hofree, Jinwook Choi, Nemanja Despot Marjanovic, Seungmin Han, David Canner, Katherine Wu, Margherita Paschini, Dong Ha Bhang,[...]. Cell 2017
200
9

Airway basal stem cells: a perspective on their roles in epithelial homeostasis and remodeling.
Jason R Rock, Scott H Randell, Brigid L M Hogan. Dis Model Mech 2010
441
9

Designer matrices for intestinal stem cell and organoid culture.
Nikolce Gjorevski, Norman Sachs, Andrea Manfrin, Sonja Giger, Maiia E Bragina, Paloma Ordóñez-Morán, Hans Clevers, Matthias P Lutolf. Nature 2016
645
9

Ductal pancreatic cancer modeling and drug screening using human pluripotent stem cell- and patient-derived tumor organoids.
Ling Huang, Audrey Holtzinger, Ishaan Jagan, Michael BeGora, Ines Lohse, Nicholas Ngai, Cristina Nostro, Rennian Wang, Lakshmi B Muthuswamy, Howard C Crawford,[...]. Nat Med 2015
391
9

Engineering of human brain organoids with a functional vascular-like system.
Bilal Cakir, Yangfei Xiang, Yoshiaki Tanaka, Mehmet H Kural, Maxime Parent, Young-Jin Kang, Kayley Chapeton, Benjamin Patterson, Yifan Yuan, Chang-Shun He,[...]. Nat Methods 2019
293
9

A Living Biobank of Breast Cancer Organoids Captures Disease Heterogeneity.
Norman Sachs, Joep de Ligt, Oded Kopper, Ewa Gogola, Gergana Bounova, Fleur Weeber, Anjali Vanita Balgobind, Karin Wind, Ana Gracanin, Harry Begthel,[...]. Cell 2018
697
9

Generating human intestinal tissue from pluripotent stem cells in vitro.
Kyle W McCracken, Jonathan C Howell, James M Wells, Jason R Spence. Nat Protoc 2011
264
8

Persistence and toxin production by Clostridium difficile within human intestinal organoids result in disruption of epithelial paracellular barrier function.
Jhansi L Leslie, Sha Huang, Judith S Opp, Melinda S Nagy, Masayuki Kobayashi, Vincent B Young, Jason R Spence. Infect Immun 2015
203
8

An in vivo model of human small intestine using pluripotent stem cells.
Carey L Watson, Maxime M Mahe, Jorge Múnera, Jonathan C Howell, Nambirajan Sundaram, Holly M Poling, Jamie I Schweitzer, Jefferson E Vallance, Christopher N Mayhew, Ying Sun,[...]. Nat Med 2014
341
8

Efficient differentiation of human embryonic stem cells to definitive endoderm.
Kevin A D'Amour, Alan D Agulnick, Susan Eliazer, Olivia G Kelly, Evert Kroon, Emmanuel E Baetge. Nat Biotechnol 2005
8

Interaction of Salmonella enterica Serovar Typhimurium with Intestinal Organoids Derived from Human Induced Pluripotent Stem Cells.
Jessica L Forbester, David Goulding, Ludovic Vallier, Nicholas Hannan, Christine Hale, Derek Pickard, Subhankar Mukhopadhyay, Gordon Dougan. Infect Immun 2015
162
8

The role of Scgb1a1+ Clara cells in the long-term maintenance and repair of lung airway, but not alveolar, epithelium.
Emma L Rawlins, Tadashi Okubo, Yan Xue, David M Brass, Richard L Auten, Hiroshi Hasegawa, Fan Wang, Brigid L M Hogan. Cell Stem Cell 2009
549
8

Single-cell Wnt signaling niches maintain stemness of alveolar type 2 cells.
Ahmad N Nabhan, Douglas G Brownfield, Pehr B Harbury, Mark A Krasnow, Tushar J Desai. Science 2018
314
8

Identification of bronchioalveolar stem cells in normal lung and lung cancer.
Carla F Bender Kim, Erica L Jackson, Amber E Woolfenden, Sharon Lawrence, Imran Babar, Sinae Vogel, Denise Crowley, Roderick T Bronson, Tyler Jacks. Cell 2005
8

Efficient derivation of purified lung and thyroid progenitors from embryonic stem cells.
Tyler A Longmire, Laertis Ikonomou, Finn Hawkins, Constantina Christodoulou, Yuxia Cao, J C Jean, Letty W Kwok, Hongmei Mou, Jayaraj Rajagopal, Steven S Shen,[...]. Cell Stem Cell 2012
249
8

Human iPS cell-derived alveolar epithelium repopulates lung extracellular matrix.
Mahboobe Ghaedi, Elizabeth A Calle, Julio J Mendez, Ashley L Gard, Jenna Balestrini, Adam Booth, Peter F Bove, Liqiong Gui, Eric S White, Laura E Niklason. J Clin Invest 2013
166
8

SARS-CoV-2 Reverse Genetics Reveals a Variable Infection Gradient in the Respiratory Tract.
Yixuan J Hou, Kenichi Okuda, Caitlin E Edwards, David R Martinez, Takanori Asakura, Kenneth H Dinnon, Takafumi Kato, Rhianna E Lee, Boyd L Yount, Teresa M Mascenik,[...]. Cell 2020
763
8

Human blood vessel organoids as a model of diabetic vasculopathy.
Reiner A Wimmer, Alexandra Leopoldi, Martin Aichinger, Nikolaus Wick, Brigitte Hantusch, Maria Novatchkova, Jasmin Taubenschmid, Monika Hämmerle, Christopher Esk, Joshua A Bagley,[...]. Nature 2019
265
8

Lung stem cell differentiation in mice directed by endothelial cells via a BMP4-NFATc1-thrombospondin-1 axis.
Joo-Hyeon Lee, Dong Ha Bhang, Alexander Beede, Tian Lian Huang, Barry R Stripp, Kenneth D Bloch, Amy J Wagers, Yu-Hua Tseng, Sandra Ryeom, Carla F Kim. Cell 2014
271
8

Organoid Cultures as Preclinical Models of Non-Small Cell Lung Cancer.
Ruoshi Shi, Nikolina Radulovich, Christine Ng, Ni Liu, Hirotsugu Notsuda, Michael Cabanero, Sebastiao N Martins-Filho, Vibha Raghavan, Quan Li, Arvind Singh Mer,[...]. Clin Cancer Res 2020
66
12


Matrigel: a complex protein mixture required for optimal growth of cell culture.
Chris S Hughes, Lynne M Postovit, Gilles A Lajoie. Proteomics 2010
741
8

A one-stop microfluidic-based lung cancer organoid culture platform for testing drug sensitivity.
Da Jung Jung, Tae Hoon Shin, Minsuh Kim, Chang Ohk Sung, Se Jin Jang, Gi Seok Jeong. Lab Chip 2019
47
17

Organoids as an in vitro model of human development and disease.
Aliya Fatehullah, Si Hui Tan, Nick Barker. Nat Cell Biol 2016
711
8

Modelling human hepato-biliary-pancreatic organogenesis from the foregut-midgut boundary.
Hiroyuki Koike, Kentaro Iwasawa, Rie Ouchi, Mari Maezawa, Kirsten Giesbrecht, Norikazu Saiki, Autumn Ferguson, Masaki Kimura, Wendy L Thompson, James M Wells,[...]. Nature 2019
114
8

Human pluripotent stem cell-derived acinar/ductal organoids generate human pancreas upon orthotopic transplantation and allow disease modelling.
Meike Hohwieler, Anett Illing, Patrick C Hermann, Tobias Mayer, Marianne Stockmann, Lukas Perkhofer, Tim Eiseler, Justin S Antony, Martin Müller, Susanne Renz,[...]. Gut 2017
122
8

Brain-Region-Specific Organoids Using Mini-bioreactors for Modeling ZIKV Exposure.
Xuyu Qian, Ha Nam Nguyen, Mingxi M Song, Christopher Hadiono, Sarah C Ogden, Christy Hammack, Bing Yao, Gregory R Hamersky, Fadi Jacob, Chun Zhong,[...]. Cell 2016
8

Microfluidic organs-on-chips.
Sangeeta N Bhatia, Donald E Ingber. Nat Biotechnol 2014
8

Drug compound screening in single and integrated multi-organoid body-on-a-chip systems.
Aleksander Skardal, Julio Aleman, Steven Forsythe, Shiny Rajan, Sean Murphy, Mahesh Devarasetty, Nima Pourhabibi Zarandi, Goodwell Nzou, Robert Wicks, Hooman Sadri-Ardekani,[...]. Biofabrication 2020
64
12

Patient-derived organoids model treatment response of metastatic gastrointestinal cancers.
Georgios Vlachogiannis, Somaieh Hedayat, Alexandra Vatsiou, Yann Jamin, Javier Fernández-Mateos, Khurum Khan, Andrea Lampis, Katherine Eason, Ian Huntingford, Rosemary Burke,[...]. Science 2018
738
8

Organoid Modeling of the Tumor Immune Microenvironment.
James T Neal, Xingnan Li, Junjie Zhu, Valeria Giangarra, Caitlin L Grzeskowiak, Jihang Ju, Iris H Liu, Shin-Heng Chiou, Ameen A Salahudeen, Amber R Smith,[...]. Cell 2018
502
8

Modelling Cryptosporidium infection in human small intestinal and lung organoids.
Inha Heo, Devanjali Dutta, Deborah A Schaefer, Nino Iakobachvili, Benedetta Artegiani, Norman Sachs, Kim E Boonekamp, Gregory Bowden, Antoni P A Hendrickx, Robert J L Willems,[...]. Nat Microbiol 2018
180
8

Differentiation of Human Pluripotent Stem Cells into Colonic Organoids via Transient Activation of BMP Signaling.
Jorge O Múnera, Nambirajan Sundaram, Scott A Rankin, David Hill, Carey Watson, Maxime Mahe, Jefferson E Vallance, Noah F Shroyer, Katie L Sinagoga, Adrian Zarzoso-Lacoste,[...]. Cell Stem Cell 2017
136
7

Synthetic hydrogels for human intestinal organoid generation and colonic wound repair.
Ricardo Cruz-Acuña, Miguel Quirós, Attila E Farkas, Priya H Dedhia, Sha Huang, Dorothée Siuda, Vicky García-Hernández, Alyssa J Miller, Jason R Spence, Asma Nusrat,[...]. Nat Cell Biol 2017
249
7

Organoid cultures recapitulate esophageal adenocarcinoma heterogeneity providing a model for clonality studies and precision therapeutics.
Xiaodun Li, Hayley E Francies, Maria Secrier, Juliane Perner, Ahmad Miremadi, Núria Galeano-Dalmau, William J Barendt, Laura Letchford, Genevieve M Leyden, Emma K Goffin,[...]. Nat Commun 2018
124
7

Generation of mesenchyme free intestinal organoids from human induced pluripotent stem cells.
Aditya Mithal, Amalia Capilla, Dar Heinze, Andrew Berical, Carlos Villacorta-Martin, Marall Vedaie, Anjali Jacob, Kristine Abo, Aleksander Szymaniak, Megan Peasley,[...]. Nat Commun 2020
55
12

Generation of kidney organoids from human pluripotent stem cells.
Minoru Takasato, Pei X Er, Han S Chiu, Melissa H Little. Nat Protoc 2016
156
7

In Vitro and In Vivo Development of the Human Airway at Single-Cell Resolution.
Alyssa J Miller, Qianhui Yu, Michael Czerwinski, Yu-Hwai Tsai, Renee F Conway, Angeline Wu, Emily M Holloway, Taylor Walker, Ian A Glass, Barbara Treutlein,[...]. Dev Cell 2020
39
17


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.