A citation-based method for searching scientific literature

Fabio Pessina, Fabio Giavazzi, Yandong Yin, Ubaldo Gioia, Valerio Vitelli, Alessandro Galbiati, Sara Barozzi, Massimiliano Garre, Amanda Oldani, Andrew Flaus, Roberto Cerbino, Dario Parazzoli, Eli Rothenberg, Fabrizio d'Adda di Fagagna. Nat Cell Biol 2019
Times Cited: 91







List of co-cited articles
1455 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Double-strand break repair: 53BP1 comes into focus.
Stephanie Panier, Simon J Boulton. Nat Rev Mol Cell Biol 2014
577
13

Mouse Heterochromatin Adopts Digital Compaction States without Showing Hallmarks of HP1-Driven Liquid-Liquid Phase Separation.
Fabian Erdel, Anne Rademacher, Rifka Vlijm, Jana Tünnermann, Lukas Frank, Robin Weinmann, Elisabeth Schweigert, Klaus Yserentant, Johan Hummert, Caroline Bauer,[...]. Mol Cell 2020
76
15

Phase separation by low complexity domains promotes stress granule assembly and drives pathological fibrillization.
Amandine Molliex, Jamshid Temirov, Jihun Lee, Maura Coughlin, Anderson P Kanagaraj, Hong Joo Kim, Tanja Mittag, J Paul Taylor. Cell 2015
13

Germline P granules are liquid droplets that localize by controlled dissolution/condensation.
Clifford P Brangwynne, Christian R Eckmann, David S Courson, Agata Rybarska, Carsten Hoege, Jöbin Gharakhani, Frank Jülicher, Anthony A Hyman. Science 2009
13

Phase separation of signaling molecules promotes T cell receptor signal transduction.
Xiaolei Su, Jonathon A Ditlev, Enfu Hui, Wenmin Xing, Sudeep Banjade, Julia Okrut, David S King, Jack Taunton, Michael K Rosen, Ronald D Vale. Science 2016
417
13

RNA phase transitions in repeat expansion disorders.
Ankur Jain, Ronald D Vale. Nature 2017
313
13

Double-strand breaks in heterochromatin move outside of a dynamic HP1a domain to complete recombinational repair.
Irene Chiolo, Aki Minoda, Serafin U Colmenares, Aris Polyzos, Sylvain V Costes, Gary H Karpen. Cell 2011
335
12

EXOSC10 is required for RPA assembly and controlled DNA end resection at DNA double-strand breaks.
Judit Domingo-Prim, Martin Endara-Coll, Franziska Bonath, Sonia Jimeno, Rosario Prados-Carvajal, Marc R Friedländer, Pablo Huertas, Neus Visa. Nat Commun 2019
44
25


Transcript-RNA-templated DNA recombination and repair.
Havva Keskin, Ying Shen, Fei Huang, Mikir Patel, Taehwan Yang, Katie Ashley, Alexander V Mazin, Francesca Storici. Nature 2014
178
12


Evaluating phase separation in live cells: diagnosis, caveats, and functional consequences.
David T McSwiggen, Mustafa Mir, Xavier Darzacq, Robert Tjian. Genes Dev 2019
157
12

HP1 reshapes nucleosome core to promote phase separation of heterochromatin.
S Sanulli, M J Trnka, V Dharmarajan, R W Tibble, B D Pascal, A L Burlingame, P R Griffin, J D Gross, G J Narlikar. Nature 2019
139
12

R Loops: From Physiological to Pathological Roles.
Tatiana García-Muse, Andrés Aguilera. Cell 2019
123
12

Nuclear microtubule filaments mediate non-linear directional motion of chromatin and promote DNA repair.
Roxanne Oshidari, Jonathan Strecker, Daniel K C Chung, Karan J Abraham, Janet N Y Chan, Christopher J Damaren, Karim Mekhail. Nat Commun 2018
42
23

Heterochromatic breaks move to the nuclear periphery to continue recombinational repair.
Taehyun Ryu, Brett Spatola, Laetitia Delabaere, Katherine Bowlin, Hannah Hopp, Ryan Kunitake, Gary H Karpen, Irene Chiolo. Nat Cell Biol 2015
131
10

ATM, ATR, and DNA-PK: The Trinity at the Heart of the DNA Damage Response.
Andrew N Blackford, Stephen P Jackson. Mol Cell 2017
631
10

DNAPKcs-dependent arrest of RNA polymerase II transcription in the presence of DNA breaks.
Tibor Pankotai, Céline Bonhomme, David Chen, Evi Soutoglou. Nat Struct Mol Biol 2012
147
10

Ago2 facilitates Rad51 recruitment and DNA double-strand break repair by homologous recombination.
Min Gao, Wei Wei, Ming-Ming Li, Yong-Sheng Wu, Zhaoqing Ba, Kang-Xuan Jin, Miao-Miao Li, You-Qi Liao, Samir Adhikari, Zechen Chong,[...]. Cell Res 2014
118
10

DNA double-strand break repair-pathway choice in somatic mammalian cells.
Ralph Scully, Arvind Panday, Rajula Elango, Nicholas A Willis. Nat Rev Mol Cell Biol 2019
281
10

The roles of RNA in DNA double-strand break repair.
Aldo S Bader, Ben R Hawley, Ania Wilczynska, Martin Bushell. Br J Cancer 2020
34
29

53BP1 exchanges slowly at the sites of DNA damage and appears to require RNA for its association with chromatin.
Fiona Pryde, Shirin Khalili, Kathryn Robertson, Jim Selfridge, Ann-Marie Ritchie, David W Melton, Denis Jullien, Yasuhisa Adachi. J Cell Sci 2005
92
10

Histone Modifications Regulate Chromatin Compartmentalization by Contributing to a Phase Separation Mechanism.
Liang Wang, Yifei Gao, Xiangdong Zheng, Cuifang Liu, Shuangshuang Dong, Ru Li, Guanwei Zhang, Yixuan Wei, Hongyuan Qu, Yuhan Li,[...]. Mol Cell 2019
91
10

Stabilization of chromatin topology safeguards genome integrity.
Fena Ochs, Gopal Karemore, Ezequiel Miron, Jill Brown, Hana Sedlackova, Maj-Britt Rask, Marko Lampe, Veronica Buckle, Lothar Schermelleh, Jiri Lukas,[...]. Nature 2019
54
18

Cell-free formation of RNA granules: low complexity sequence domains form dynamic fibers within hydrogels.
Masato Kato, Tina W Han, Shanhai Xie, Kevin Shi, Xinlin Du, Leeju C Wu, Hamid Mirzaei, Elizabeth J Goldsmith, Jamie Longgood, Jimin Pei,[...]. Cell 2012
10

m6A enhances the phase separation potential of mRNA.
Ryan J Ries, Sara Zaccara, Pierre Klein, Anthony Olarerin-George, Sim Namkoong, Brian F Pickering, Deepak P Patil, Hojoong Kwak, Jun Hee Lee, Samie R Jaffrey. Nature 2019
181
10

Phosphorylation-regulated binding of RNA polymerase II to fibrous polymers of low-complexity domains.
Ilmin Kwon, Masato Kato, Siheng Xiang, Leeju Wu, Pano Theodoropoulos, Hamid Mirzaei, Tina Han, Shanhai Xie, Jeffry L Corden, Steven L McKnight. Cell 2013
308
10

Phase transition of a disordered nuage protein generates environmentally responsive membraneless organelles.
Timothy J Nott, Evangelia Petsalaki, Patrick Farber, Dylan Jervis, Eden Fussner, Anne Plochowietz, Timothy D Craggs, David P Bazett-Jones, Tony Pawson, Julie D Forman-Kay,[...]. Mol Cell 2015
715
10

Paraspeckles: Where Long Noncoding RNA Meets Phase Separation.
Archa H Fox, Shinichi Nakagawa, Tetsuro Hirose, Charles S Bond. Trends Biochem Sci 2018
152
10

mRNA structure determines specificity of a polyQ-driven phase separation.
Erin M Langdon, Yupeng Qiu, Amirhossein Ghanbari Niaki, Grace A McLaughlin, Chase A Weidmann, Therese M Gerbich, Jean A Smith, John M Crutchley, Christina M Termini, Kevin M Weeks,[...]. Science 2018
213
10

Liquid-Liquid Phase Separation in Disease.
Simon Alberti, Dorothee Dormann. Annu Rev Genet 2019
152
10

Residue-by-Residue View of In Vitro FUS Granules that Bind the C-Terminal Domain of RNA Polymerase II.
Kathleen A Burke, Abigail M Janke, Christy L Rhine, Nicolas L Fawzi. Mol Cell 2015
385
10

53BP1 and the LINC Complex Promote Microtubule-Dependent DSB Mobility and DNA Repair.
Francisca Lottersberger, Roos Anna Karssemeijer, Nadya Dimitrova, Titia de Lange. Cell 2015
155
9

Nuclear F-actin and myosins drive relocalization of heterochromatic breaks.
Christopher P Caridi, Carla D'Agostino, Taehyun Ryu, Grzegorz Zapotoczny, Laetitia Delabaere, Xiao Li, Varandt Y Khodaverdian, Nuno Amaral, Emily Lin, Alesandra R Rau,[...]. Nature 2018
139
9

Nuclear condensates of the Polycomb protein chromobox 2 (CBX2) assemble through phase separation.
Roubina Tatavosian, Samantha Kent, Kyle Brown, Tingting Yao, Huy Nguyen Duc, Thao Ngoc Huynh, Chao Yu Zhen, Brian Ma, Haobin Wang, Xiaojun Ren. J Biol Chem 2019
120
9

Structure of FUS Protein Fibrils and Its Relevance to Self-Assembly and Phase Separation of Low-Complexity Domains.
Dylan T Murray, Masato Kato, Yi Lin, Kent R Thurber, Ivan Hung, Steven L McKnight, Robert Tycko. Cell 2017
286
9

Active liquid-like behavior of nucleoli determines their size and shape in Xenopus laevis oocytes.
Clifford P Brangwynne, Timothy J Mitchison, Anthony A Hyman. Proc Natl Acad Sci U S A 2011
561
9

DNA damage response inhibition at dysfunctional telomeres by modulation of telomeric DNA damage response RNAs.
Francesca Rossiello, Julio Aguado, Sara Sepe, Fabio Iannelli, Quan Nguyen, Sethuramasundaram Pitchiaya, Piero Carninci, Fabrizio d'Adda di Fagagna. Nat Commun 2017
43
20

Partitioning of cancer therapeutics in nuclear condensates.
Isaac A Klein, Ann Boija, Lena K Afeyan, Susana Wilson Hawken, Mengyang Fan, Alessandra Dall'Agnese, Ozgur Oksuz, Jonathan E Henninger, Krishna Shrinivas, Benjamin R Sabari,[...]. Science 2020
72
12

Phase separation of YAP reorganizes genome topology for long-term YAP target gene expression.
Danfeng Cai, Daniel Feliciano, Peng Dong, Eduardo Flores, Martin Gruebele, Natalie Porat-Shliom, Shahar Sukenik, Zhe Liu, Jennifer Lippincott-Schwartz. Nat Cell Biol 2019
75
12

Single-molecule imaging of transcription at damaged chromatin.
Alexandra C Vítor, Sreerama C Sridhara, João C Sabino, Ana I Afonso, Ana R Grosso, Robert M Martin, Sérgio F de Almeida. Sci Adv 2019
23
39

The nucleolus functions as a phase-separated protein quality control compartment.
F Frottin, F Schueder, S Tiwary, R Gupta, R Körner, T Schlichthaerle, J Cox, R Jungmann, F U Hartl, M S Hipp. Science 2019
134
9

The Smc5-Smc6 complex and SUMO modification of Rad52 regulates recombinational repair at the ribosomal gene locus.
Jordi Torres-Rosell, Ivana Sunjevaric, Giacomo De Piccoli, Meik Sacher, Nadine Eckert-Boulet, Robert Reid, Stefan Jentsch, Rodney Rothstein, Luis Aragón, Michael Lisby. Nat Cell Biol 2007
277
8

BRCA2 prevents R-loop accumulation and associates with TREX-2 mRNA export factor PCID2.
Vaibhav Bhatia, Sonia I Barroso, María L García-Rubio, Emanuela Tumini, Emilia Herrera-Moyano, Andrés Aguilera. Nature 2014
282
8

DEAD Box 1 Facilitates Removal of RNA and Homologous Recombination at DNA Double-Strand Breaks.
Lei Li, Devon R Germain, Ho-Yin Poon, Matthew R Hildebrandt, Elizabeth A Monckton, Darin McDonald, Michael J Hendzel, Roseline Godbout. Mol Cell Biol 2016
69
11


Identification of the elementary structural units of the DNA damage response.
Francesco Natale, Alexander Rapp, Wei Yu, Andreas Maiser, Hartmann Harz, Annina Scholl, Stephan Grulich, Tobias Anton, David Hörl, Wei Chen,[...]. Nat Commun 2017
76
10

Transcription and DNA Damage: Holding Hands or Crossing Swords?
Giuseppina D'Alessandro, Fabrizio d'Adda di Fagagna. J Mol Biol 2017
41
19

Spatiotemporal Control of Intracellular Phase Transitions Using Light-Activated optoDroplets.
Yongdae Shin, Joel Berry, Nicole Pannucci, Mikko P Haataja, Jared E Toettcher, Clifford P Brangwynne. Cell 2017
283
8

53BP1: a DSB escort.
Zachary Mirman, Titia de Lange. Genes Dev 2020
56
14


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.