A citation-based method for searching scientific literature

Samuel L Wolock, Romain Lopez, Allon M Klein. Cell Syst 2019
Times Cited: 245







List of co-cited articles
653 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


SingleCellSignalR: inference of intercellular networks from single-cell transcriptomics.
Simon Cabello-Aguilar, Mélissa Alame, Fabien Kon-Sun-Tack, Caroline Fau, Matthieu Lacroix, Jacques Colinge. Nucleic Acids Res 2020
41
2

The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.
Aaron McKenna, Matthew Hanna, Eric Banks, Andrey Sivachenko, Kristian Cibulskis, Andrew Kernytsky, Kiran Garimella, David Altshuler, Stacey Gabriel, Mark Daly,[...]. Genome Res 2010
1

IL-17A-Induced PLET1 Expression Contributes to Tissue Repair and Colon Tumorigenesis.
Jarod A Zepp, Junjie Zhao, Caini Liu, Katazyna Bulek, Ling Wu, Xing Chen, Yujun Hao, Zhenghe Wang, Xinxin Wang, Wenjun Ouyang,[...]. J Immunol 2017
25
4

Imaging of adipose tissue.
Ryan Berry, Christopher D Church, Martin T Gericke, Elise Jeffery, Laura Colman, Matthew S Rodeheffer. Methods Enzymol 2014
54
1

Neurotensin is an anti-thermogenic peptide produced by lymphatic endothelial cells.
Jin Li, Erwei Li, Rafael S Czepielewski, Jingyi Chi, Xiao Guo, Yong-Hyun Han, Daqing Wang, Luhong Wang, Bo Hu, Brian Dawes,[...]. Cell Metab 2021
3
33


Characterization of Cre recombinase models for the study of adipose tissue.
Elise Jeffery, Ryan Berry, Christopher D Church, Songtao Yu, Brett A Shook, Valerie Horsley, Evan D Rosen, Matthew S Rodeheffer. Adipocyte 2014
132
1

Contribution of mesothelial cells in the expression of inflammatory-related factors in omental adipose tissue of obese subjects.
C Darimont, O Avanti, F Blancher, S Wagniere, R Mansourian, I Zbinden, P Leone-Vautravers, A Fuerholz, V Giusti, K Macé. Int J Obes (Lond) 2008
23
4

Epicardial progenitors contribute to the cardiomyocyte lineage in the developing heart.
Bin Zhou, Qing Ma, Satish Rajagopal, Sean M Wu, Ibrahim Domian, José Rivera-Feliciano, Dawei Jiang, Alexander von Gise, Sadakatsu Ikeda, Kenneth R Chien,[...]. Nature 2008
680
1


Identification of white adipocyte progenitor cells in vivo.
Matthew S Rodeheffer, Kivanç Birsoy, Jeffrey M Friedman. Cell 2008
625
1

Inhibition of adipocyte differentiation by Nur77, Nurr1, and Nor1.
Lily C Chao, Steven J Bensinger, Claudio J Villanueva, Kevin Wroblewski, Peter Tontonoz. Mol Endocrinol 2008
62
1

Visceral and subcutaneous fat have different origins and evidence supports a mesothelial source.
You-Ying Chau, Roberto Bandiera, Alan Serrels, Ofelia M Martínez-Estrada, Wei Qing, Martin Lee, Joan Slight, Anna Thornburn, Rachel Berry, Sophie McHaffie,[...]. Nat Cell Biol 2014
290
1

Single cell transcriptomics suggest that human adipocyte progenitor cells constitute a homogeneous cell population.
Juan R Acosta, Simon Joost, Kasper Karlsson, Anna Ehrlund, Xidan Li, Myriam Aouadi, Maria Kasper, Peter Arner, Mikael Rydén, Jurga Laurencikiene. Stem Cell Res Ther 2017
29
3

Insulin-Like Growth Factor 1 Receptor-Dependent Pathway Drives Epicardial Adipose Tissue Formation After Myocardial Injury.
Lior Zangi, Marcela S Oliveira, Lillian Y Ye, Qing Ma, Nishat Sultana, Yoav Hadas, Elena Chepurko, Daniela Später, Bin Zhou, Wei Leong Chew,[...]. Circulation 2017
40
2

Using a 3D Culture System to Differentiate Visceral Adipocytes In Vitro.
Margo P Emont, Hui Yu, Heejin Jun, Xiaowei Hong, Nenita Maganti, Jan P Stegemann, Jun Wu. Endocrinology 2015
23
4

Impact of tamoxifen on adipocyte lineage tracing: Inducer of adipogenesis and prolonged nuclear translocation of Cre recombinase.
Risheng Ye, Qiong A Wang, Caroline Tao, Lavanya Vishvanath, Mengle Shao, Jeffery G McDonald, Rana K Gupta, Philipp E Scherer. Mol Metab 2015
71
1

Flow cytometry analyses of adipose tissue macrophages.
Kae Won Cho, David L Morris, Carey N Lumeng. Methods Enzymol 2014
70
1

Acute multiple organ failure in adult mice deleted for the developmental regulator Wt1.
You-Ying Chau, David Brownstein, Heidi Mjoseng, Wen-Chin Lee, Natalija Buza-Vidas, Claus Nerlov, Sten Eirik Jacobsen, Paul Perry, Rachel Berry, Anna Thornburn,[...]. PLoS Genet 2011
81
1


A suite of new Dre recombinase drivers markedly expands the ability to perform intersectional genetic targeting.
Ximeng Han, Zhenqian Zhang, Lingjuan He, Huan Zhu, Yan Li, Wenjuan Pu, Maoying Han, Huan Zhao, Kuo Liu, Yi Li,[...]. Cell Stem Cell 2021
13
7


Altered adipose tissue and adipocyte function in the pathogenesis of metabolic syndrome.
C Ronald Kahn, Guoxiao Wang, Kevin Y Lee. J Clin Invest 2019
91
1

Wt1 and epicardial fate mapping.
Carsten Rudat, Andreas Kispert. Circ Res 2012
94
1

Toward a Consensus View of Mammalian Adipocyte Stem and Progenitor Cell Heterogeneity.
Radiana Ferrero, Pernille Rainer, Bart Deplancke. Trends Cell Biol 2020
4
25

Transplanted Bone Marrow-Derived Cells Contribute to Human Adipogenesis.
Mikael Rydén, Mehmet Uzunel, Joanna L Hård, Erik Borgström, Jeff E Mold, Erik Arner, Niklas Mejhert, Daniel P Andersson, Yvonne Widlund, Moustapha Hassan,[...]. Cell Metab 2015
56
1

An unsupervised method for physical cell interaction profiling of complex tissues.
Nathanael Andrews, Jason T Serviss, Natalie Geyer, Agneta B Andersson, Ewa Dzwonkowska, Iva Šutevski, Rosan Heijboer, Ninib Baryawno, Marco Gerling, Martin Enge. Nat Methods 2021
2
50

Clump sequencing exposes the spatial expression programs of intestinal secretory cells.
Rita Manco, Inna Averbukh, Ziv Porat, Keren Bahar Halpern, Ido Amit, Shalev Itzkovitz. Nat Commun 2021
2
50

Inference and analysis of cell-cell communication using CellChat.
Suoqin Jin, Christian F Guerrero-Juarez, Lihua Zhang, Ivan Chang, Raul Ramos, Chen-Hsiang Kuan, Peggy Myung, Maksim V Plikus, Qing Nie. Nat Commun 2021
37
2

Divergent angiocrine signals from vascular niche balance liver regeneration and fibrosis.
Bi-Sen Ding, Zhongwei Cao, Raphael Lis, Daniel J Nolan, Peipei Guo, Michael Simons, Mark E Penfold, Koji Shido, Sina Y Rabbany, Shahin Rafii. Nature 2014
314
1

Single-Cell Transcriptomics Reveals Zone-Specific Alterations of Liver Sinusoidal Endothelial Cells in Cirrhosis.
Tingting Su, Yilin Yang, Sanchuan Lai, Jain Jeong, Yirang Jung, Matthew McConnell, Teruo Utsumi, Yasuko Iwakiri. Cell Mol Gastroenterol Hepatol 2021
7
14

DNase I-hypersensitive sites enhance alpha1(I) collagen gene expression in hepatic stellate cells.
Yutaka Yata, Andrew Scanga, Andrea Gillan, Liu Yang, Shimon Reif, Michael Breindl, David A Brenner, Richard A Rippe. Hepatology 2003
127
1


Mechanotransduction-modulated fibrotic microniches reveal the contribution of angiogenesis in liver fibrosis.
Longwei Liu, Zhifeng You, Hongsheng Yu, Lyu Zhou, Hui Zhao, Xiaojun Yan, Dulei Li, Bingjie Wang, Lu Zhu, Yuzhou Xu,[...]. Nat Mater 2017
57
1

S100A4 promotes liver fibrosis via activation of hepatic stellate cells.
Lin Chen, Jie Li, Jinhua Zhang, Chengliang Dai, Xiaoman Liu, Jun Wang, Zhitao Gao, Hongyan Guo, Rui Wang, Shichun Lu,[...]. J Hepatol 2015
71
1


Angiocrine signaling in the hepatic sinusoids in health and disease.
Enis Kostallari, Vijay H Shah. Am J Physiol Gastrointest Liver Physiol 2016
25
4

Foxf1 +/- mice exhibit defective stellate cell activation and abnormal liver regeneration following CCl4 injury.
Vladimir V Kalinichenko, Dibyendu Bhattacharyya, Yan Zhou, Galina A Gusarova, Wooram Kim, Brian Shin, Robert H Costa. Hepatology 2003
104
1

Fate tracing reveals hepatic stellate cells as dominant contributors to liver fibrosis independent of its aetiology.
Ingmar Mederacke, Christine C Hsu, Juliane S Troeger, Peter Huebener, Xueru Mu, Dianne H Dapito, Jean-Philippe Pradere, Robert F Schwabe. Nat Commun 2013
621
1

Identification of the key regions within the mouse pro-alpha 2(I) collagen gene far-upstream enhancer.
Sarah De Val, Markella Ponticos, Taras T Antoniv, Dominic J Wells, David Abraham, Terence Partridge, George Bou-Gharios. J Biol Chem 2002
23
4

Endothelial Notch activation reshapes the angiocrine of sinusoidal endothelia to aggravate liver fibrosis and blunt regeneration in mice.
Juan-Li Duan, Bai Ruan, Xian-Chun Yan, Liang Liang, Ping Song, Zi-Yan Yang, Yuan Liu, Ke-Feng Dou, Hua Han, Lin Wang. Hepatology 2018
32
3

Sinusoidal communication in liver fibrosis and regeneration.
Giusi Marrone, Vijay H Shah, Jordi Gracia-Sancho. J Hepatol 2016
115
1

Liver sinusoidal endothelial cells: Physiology and role in liver diseases.
Johanne Poisson, Sara Lemoinne, Chantal Boulanger, François Durand, Richard Moreau, Dominique Valla, Pierre-Emmanuel Rautou. J Hepatol 2017
311
1

Endothelial GATA4 controls liver fibrosis and regeneration by preventing a pathogenic switch in angiocrine signaling.
Manuel Winkler, Theresa Staniczek, Sina Wietje Kürschner, Christian David Schmid, Hiltrud Schönhaber, Julio Cordero, Linda Kessler, Arthur Mathes, Carsten Sticht, Michelle Neßling,[...]. J Hepatol 2021
12
8

Single-Cell Transcriptomics Uncovers Zonation of Function in the Mesenchyme during Liver Fibrosis.
Ross Dobie, John R Wilson-Kanamori, Beth E P Henderson, James R Smith, Kylie P Matchett, Jordan R Portman, Karolina Wallenborg, Simone Picelli, Anna Zagorska, Swetha V Pendem,[...]. Cell Rep 2019
85
1

Smoothened is a master regulator of adult liver repair.
Gregory A Michelotti, Guanhua Xie, Marzena Swiderska, Steve S Choi, Gamze Karaca, Leandi Krüger, Richard Premont, Liu Yang, Wing-Kin Syn, Daniel Metzger,[...]. J Clin Invest 2013
155
1

A small population of liver endothelial cells undergoes endothelial-to-mesenchymal transition in response to chronic liver injury.
Jordi Ribera, Montse Pauta, Pedro Melgar-Lesmes, Bernat Córdoba, Anna Bosch, Maria Calvo, Daniel Rodrigo-Torres, Pau Sancho-Bru, Aurea Mira, Wladimiro Jiménez,[...]. Am J Physiol Gastrointest Liver Physiol 2017
28
3



Fibroblasts derive from hepatocytes in liver fibrosis via epithelial to mesenchymal transition.
Michael Zeisberg, Changqing Yang, Margot Martino, Michael B Duncan, Florian Rieder, Harikrishna Tanjore, Raghu Kalluri. J Biol Chem 2007
604
1


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.