A citation-based method for searching scientific literature

Todd S Macfarlan, Wesley D Gifford, Shawn Driscoll, Karen Lettieri, Helen M Rowe, Dario Bonanomi, Amy Firth, Oded Singer, Didier Trono, Samuel L Pfaff. Nature 2012
Times Cited: 535







List of co-cited articles
1206 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Fitting a mixture model by expectation maximization to discover motifs in biopolymers.
T L Bailey, C Elkan. Proc Int Conf Intell Syst Mol Biol 1994
1

Polarity in Cell-Fate Acquisition in the Early Mouse Embryo.
C Y Leung, M Zhu, M Zernicka-Goetz. Curr Top Dev Biol 2016
12
8



The roles of FGF and MAP kinase signaling in the segregation of the epiblast and hypoblast cell lineages in bovine and human embryos.
Ewart W Kuijk, Leni T A van Tol, Hilde Van de Velde, Richard Wubbolts, Maaike Welling, Niels Geijsen, Bernard A J Roelen. Development 2012
160
1

Transgenic rhesus monkeys produced by gene transfer into early-cleavage-stage embryos using a simian immunodeficiency virus-based vector.
Yuyu Niu, Yang Yu, Agnieszka Bernat, Shihua Yang, Xiechao He, Xiangyu Guo, Dongliang Chen, Yongchang Chen, Shaohui Ji, Wei Si,[...]. Proc Natl Acad Sci U S A 2010
57
1

Trophoblast lineage specification, differentiation and their regulation by oxygen tension.
Ching-Wen Chang, Anna K Wakeland, Mana M Parast. J Endocrinol 2018
51
1

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.
Sudhir Kumar, Glen Stecher, Michael Li, Christina Knyaz, Koichiro Tamura. Mol Biol Evol 2018
1

Transcriptional dynamics of transposable elements when converting fibroblast cells of Macaca mulatta to neuroepithelial stem cells.
Dahai Liu, Li Liu, Kui Duan, Junqiang Guo, Shipeng Li, Zhigang Zhao, Xiaotuo Zhang, Nan Zhou, Yun Zheng. BMC Genomics 2021
1
100


CTCF: master weaver of the genome.
Jennifer E Phillips, Victor G Corces. Cell 2009
1

Origin of the retroviruses: when, where, and how?
Alexander Hayward. Curr Opin Virol 2017
21
4

Specific loss of histone H3 lysine 9 trimethylation and HP1gamma/cohesin binding at D4Z4 repeats is associated with facioscapulohumeral dystrophy (FSHD).
Weihua Zeng, Jessica C de Greef, Yen-Yun Chen, Richard Chien, Xiangduo Kong, Heather C Gregson, Sara T Winokur, April Pyle, Keith D Robertson, John A Schmiesing,[...]. PLoS Genet 2009
188
1


Characterizing the strand-specific distribution of non-CpG methylation in human pluripotent cells.
Weilong Guo, Wen-Yu Chung, Minping Qian, Matteo Pellegrini, Michael Q Zhang. Nucleic Acids Res 2014
39
2

TET-dependent regulation of retrotransposable elements in mouse embryonic stem cells.
Lorenzo de la Rica, Özgen Deniz, Kevin C L Cheng, Christopher D Todd, Cristina Cruz, Jonathan Houseley, Miguel R Branco. Genome Biol 2016
40
2

Human body epigenome maps reveal noncanonical DNA methylation variation.
Matthew D Schultz, Yupeng He, John W Whitaker, Manoj Hariharan, Eran A Mukamel, Danny Leung, Nisha Rajagopal, Joseph R Nery, Mark A Urich, Huaming Chen,[...]. Nature 2015
338
1

Selfish DNA: the ultimate parasite.
L E Orgel, F H Crick. Nature 1980
1

A genome-wide RNAi screen identifies a new transcriptional module required for self-renewal.
Guang Hu, Jonghwan Kim, Qikai Xu, Yumei Leng, Stuart H Orkin, Stephen J Elledge. Genes Dev 2009
304
1


Novel Alu retrotransposon insertion leading to Alström syndrome.
Mustafa Taşkesen, Gayle B Collin, Alexei V Evsikov, Ayşegül Güzel, R Köksal Özgül, Jan D Marshall, Jürgen K Naggert. Hum Genet 2012
23
4

Genomic distribution and inter-sample variation of non-CpG methylation across human cell types.
Michael J Ziller, Fabian Müller, Jing Liao, Yingying Zhang, Hongcang Gu, Christoph Bock, Patrick Boyle, Charles B Epstein, Bradley E Bernstein, Thomas Lengauer,[...]. PLoS Genet 2011
247
1

The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ Cells.
Fan Guo, Liying Yan, Hongshan Guo, Lin Li, Boqiang Hu, Yangyu Zhao, Jun Yong, Yuqiong Hu, Xiaoye Wang, Yuan Wei,[...]. Cell 2015
269
1

Retrotransposable elements and human disease.
P A Callinan, M A Batzer. Genome Dyn 2006
116
1

Lysine-specific demethylase 1 regulates the embryonic transcriptome and CoREST stability.
Charles T Foster, Oliver M Dovey, Larissa Lezina, Jin Li Luo, Timothy W Gant, Nick Barlev, Allan Bradley, Shaun M Cowley. Mol Cell Biol 2010
130
1

Haemophilia A mutations in the UK: results of screening one-third of the population.
P M Green, R D Bagnall, N H Waseem, F Giannelli. Br J Haematol 2008
42
2

The Kruppel-associated box repressor domain can trigger de novo promoter methylation during mouse early embryogenesis.
Maciej Wiznerowicz, Johan Jakobsson, Jolanta Szulc, Shunyao Liao, Alexandra Quazzola, Friedrich Beermann, Patrick Aebischer, Didier Trono. J Biol Chem 2007
79
1

Gadd45a promotes epigenetic gene activation by repair-mediated DNA demethylation.
Guillermo Barreto, Andrea Schäfer, Joachim Marhold, Dirk Stach, Suresh K Swaminathan, Vikas Handa, Gabi Döderlein, Nicole Maltry, Wei Wu, Frank Lyko,[...]. Nature 2007
537
1

Base-resolution analyses of sequence and parent-of-origin dependent DNA methylation in the mouse genome.
Wei Xie, Cathy L Barr, Audrey Kim, Feng Yue, Ah Young Lee, James Eubanks, Emma L Dempster, Bing Ren. Cell 2012
332
1


The Dnmt3L ADD Domain Controls Cytosine Methylation Establishment during Spermatogenesis.
Georgios Vlachogiannis, Chad E Niederhuth, Salih Tuna, Athanasia Stathopoulou, Keijo Viiri, Dirk G de Rooij, Richard G Jenner, Robert J Schmitz, Steen K T Ooi. Cell Rep 2015
25
4

Comparative dynamics of 5-methylcytosine reprogramming and TET family expression during preimplantation mammalian development in mouse and sheep.
F Jafarpour, S M Hosseini, S Ostadhosseini, H Abbasi, A Dalman, M H Nasr-Esfahani. Theriogenology 2017
14
7

The NF1 gene contains hotspots for L1 endonuclease-dependent de novo insertion.
Katharina Wimmer, Tom Callens, Annekatrin Wernstedt, Ludwine Messiaen. PLoS Genet 2011
57
1

Accumulation and loss of asymmetric non-CpG methylation during male germ-cell development.
Tomoko Ichiyanagi, Kenji Ichiyanagi, Miho Miyake, Hiroyuki Sasaki. Nucleic Acids Res 2013
57
1

Extensive SUMO Modification of Repressive Chromatin Factors Distinguishes Pluripotent from Somatic Cells.
Ilan Theurillat, Ivo A Hendriks, Jack-Christophe Cossec, Alexandra Andrieux, Michael L Nielsen, Anne Dejean. Cell Rep 2020
6
16

CTCF is a barrier for 2C-like reprogramming.
Teresa Olbrich, Maria Vega-Sendino, Desiree Tillo, Wei Wu, Nicholas Zolnerowich, Raphael Pavani, Andy D Tran, Catherine N Domingo, Mariajose Franco, Marta Markiewicz-Potoczny,[...]. Nat Commun 2021
2
50

The diversity of retrotransposons and the properties of their reverse transcriptases.
Thomas H Eickbush, Varuni K Jamburuthugoda. Virus Res 2008
141
1


Alu-element insertion in an OPA1 intron sequence associated with autosomal dominant optic atrophy.
Gian Nicola Gallus, Elena Cardaioli, Alessandra Rufa, Paola Da Pozzo, Silvia Bianchi, Camilla D'Eramo, Michele Collura, Manuela Tumino, Lorenzo Pavone, Antonio Federico. Mol Vis 2010
31
3

Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells.
Ryan Lister, Mattia Pelizzola, Yasuyuki S Kida, R David Hawkins, Joseph R Nery, Gary Hon, Jessica Antosiewicz-Bourget, Ronan O'Malley, Rosa Castanon, Sarit Klugman,[...]. Nature 2011
1

The DNA methyltransferases of mammals.
T H Bestor. Hum Mol Genet 2000
1

Evolution and gene capture in ancient endogenous retroviruses - insights from the crocodilian genomes.
Amanda Y Chong, Kenji K Kojima, Jerzy Jurka, David A Ray, Arian F A Smit, Sally R Isberg, Jaime Gongora. Retrovirology 2014
17
5



Maternal Setdb1 Is Required for Meiotic Progression and Preimplantation Development in Mouse.
Jeesun Kim, Hongbo Zhao, Jiameng Dan, Soojin Kim, Swanand Hardikar, Debra Hollowell, Kevin Lin, Yue Lu, Yoko Takata, Jianjun Shen,[...]. PLoS Genet 2016
42
2

Multiple waves of recent DNA transposon activity in the bat, Myotis lucifugus.
David A Ray, Cedric Feschotte, Heidi J T Pagan, Jeremy D Smith, Ellen J Pritham, Peter Arensburger, Peter W Atkinson, Nancy L Craig. Genome Res 2008
105
1

Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development.
M S Ko, J R Kitchen, X Wang, T A Threat, X Wang, A Hasegawa, T Sun, M J Grahovac, G J Kargul, M K Lim,[...]. Development 2000
186
1

Extinction of LINE-1 activity coincident with a major mammalian radiation in rodents.
R A Grahn, T A Rinehart, M A Cantrell, H A Wichman. Cytogenet Genome Res 2005
44
2

The developmental potential of iPSCs is greatly influenced by reprogramming factor selection.
Yosef Buganim, Styliani Markoulaki, Niek van Wietmarschen, Heather Hoke, Tao Wu, Kibibi Ganz, Batool Akhtar-Zaidi, Yupeng He, Brian J Abraham, David Porubsky,[...]. Cell Stem Cell 2014
98
1

Conversion of Sox17 into a pluripotency reprogramming factor by reengineering its association with Oct4 on DNA.
Ralf Jauch, Irene Aksoy, Andrew Paul Hutchins, Calista Keow Leng Ng, Xian Feng Tian, Jiaxuan Chen, Paaventhan Palasingam, Paul Robson, Lawrence W Stanton, Prasanna R Kolatkar. Stem Cells 2011
72
1


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.