A citation-based method for searching scientific literature

Aziz El Hage, Shaun Webb, Alastair Kerr, David Tollervey. PLoS Genet 2014
Times Cited: 124







List of co-cited articles
1083 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Nuclear pore association confers optimal expression levels for an inducible yeast gene.
Angela Taddei, Griet Van Houwe, Florence Hediger, Veronique Kalck, Fabien Cubizolles, Heiko Schober, Susan M Gasser. Nature 2006
288
1

Replication stress checkpoint signaling controls tRNA gene transcription.
Vesna C Nguyen, Brett W Clelland, Darren J Hockman, Sonya L Kujat-Choy, Holly E Mewhort, Michael C Schultz. Nat Struct Mol Biol 2010
37
2

Rescuing stalled or damaged replication forks.
Joseph T P Yeeles, Jérôme Poli, Kenneth J Marians, Philippe Pasero. Cold Spring Harb Perspect Biol 2013
148
1

Yeast PP4 interacts with ATR homolog Ddc2-Mec1 and regulates checkpoint signaling.
Nicole Hustedt, Andrew Seeber, Ragna Sack, Monika Tsai-Pflugfelder, Bhupinder Bhullar, Hanneke Vlaming, Fred van Leeuwen, Aude Guénolé, Haico van Attikum, Rohith Srivas,[...]. Mol Cell 2015
36
2

Cdc48/p97 mediates UV-dependent turnover of RNA Pol II.
Rati Verma, Robert Oania, Ruihua Fang, Geoffrey T Smith, Raymond J Deshaies. Mol Cell 2011
141
1

Fine-Resolution Mapping of TF Binding and Chromatin Interactions.
Jenia Gutin, Ronen Sadeh, Nitzan Bodenheimer, Daphna Joseph-Strauss, Avital Klein-Brill, Adi Alajem, Oren Ram, Nir Friedman. Cell Rep 2018
21
4

Harmful DNA:RNA hybrids are formed in cis and in a Rad51-independent manner.
Juan Lafuente-Barquero, Maria Luisa García-Rubio, Marta San Martin-Alonso, Belén Gómez-González, Andrés Aguilera. Elife 2020
8
12

Analysis of replication profiles reveals key role of RFC-Ctf18 in yeast replication stress response.
Laure Crabbé, Aubin Thomas, Véronique Pantesco, John De Vos, Philippe Pasero, Armelle Lengronne. Nat Struct Mol Biol 2010
87
1


Phosphoproteomics reveals distinct modes of Mec1/ATR signaling during DNA replication.
Francisco Meirelles Bastos de Oliveira, Dongsung Kim, José Renato Cussiol, Jishnu Das, Min Cheol Jeong, Lillian Doerfler, Kristina Hildegard Schmidt, Haiyuan Yu, Marcus Bustamante Smolka. Mol Cell 2015
69
1

Cell cycle-resolved chromatin proteomics reveals the extent of mitotic preservation of the genomic regulatory landscape.
Paul Adrian Ginno, Lukas Burger, Jan Seebacher, Vytautas Iesmantavicius, Dirk Schübeler. Nat Commun 2018
32
3


Mapping of early firing origins on a replication profile of budding yeast.
Nami Yabuki, Hiromichi Terashima, Kunio Kitada. Genes Cells 2002
184
1

ATR autophosphorylation as a molecular switch for checkpoint activation.
Shizhou Liu, Bunsyo Shiotani, Mayurika Lahiri, Alexandre Maréchal, Alice Tse, Charles Chung Yun Leung, J N Mark Glover, Xiaohong H Yang, Lee Zou. Mol Cell 2011
156
1

Genome-wide localization of the nuclear transport machinery couples transcriptional status and nuclear organization.
Jason M Casolari, Christopher R Brown, Suzanne Komili, Jason West, Haley Hieronymus, Pamela A Silver. Cell 2004
444
1

Nuclear pore complexes and regulation of gene expression.
Marcela Raices, Maximiliano A D'Angelo. Curr Opin Cell Biol 2017
53
1

Mec1ATR Autophosphorylation and Ddc2ATRIP Phosphorylation Regulates DNA Damage Checkpoint Signaling.
Gonen Memisoglu, Michael C Lanz, Vinay V Eapen, Jacqueline M Jordan, Kihoon Lee, Marcus B Smolka, James E Haber. Cell Rep 2019
7
14

Damage-induced chromatome dynamics link Ubiquitin ligase and proteasome recruitment to histone loss and efficient DNA repair.
Kiran Challa, Christoph D Schmid, Saho Kitagawa, Anaïs Cheblal, Vytautas Iesmantavicius, Andrew Seeber, Assaf Amitai, Jan Seebacher, Michael H Hauer, Kenji Shimada,[...]. Mol Cell 2021
6
16

WDR82/PNUTS-PP1 Prevents Transcription-Replication Conflicts by Promoting RNA Polymerase II Degradation on Chromatin.
Helga B Landsverk, Lise E Sandquist, Lilli T E Bay, Barbara Steurer, Coen Campsteijn, Ole J B Landsverk, Jurgen A Marteijn, Eva Petermann, Laura Trinkle-Mulcahy, Randi G Syljuåsen. Cell Rep 2020
7
14

Thr-1989 phosphorylation is a marker of active ataxia telangiectasia-mutated and Rad3-related (ATR) kinase.
Edward A Nam, Runxiang Zhao, Gloria G Glick, Carol E Bansbach, David B Friedman, David Cortez. J Biol Chem 2011
77
1

Epigenetic Control of Expression Homeostasis during Replication Is Stabilized by the Replication Checkpoint.
Yoav Voichek, Karin Mittelman, Yulia Gordon, Raz Bar-Ziv, David Lifshitz Smit, Rom Shenhav, Naama Barkai. Mol Cell 2018
15
6


ChIPmentation: fast, robust, low-input ChIP-seq for histones and transcription factors.
Christian Schmidl, André F Rendeiro, Nathan C Sheffield, Christoph Bock. Nat Methods 2015
207
1

DNA polymerase stabilization at stalled replication forks requires Mec1 and the RecQ helicase Sgs1.
Jennifer A Cobb, Lotte Bjergbaek, Kenji Shimada, Christian Frei, Susan M Gasser. EMBO J 2003
272
1

Transcription Factor Binding to Replicated DNA.
Raz Bar-Ziv, Sagie Brodsky, Michal Chapal, Naama Barkai. Cell Rep 2020
5
20

Replication checkpoint: tuning and coordination of replication forks in s phase.
Nicole Hustedt, Susan M Gasser, Kenji Shimada. Genes (Basel) 2013
39
2

Ino80 chromatin remodeling complex promotes recovery of stalled replication forks.
Kenji Shimada, Yukako Oma, Thomas Schleker, Kazuto Kugou, Kunihiro Ohta, Masahiko Harata, Susan M Gasser. Curr Biol 2008
135
1

Decoding the chromatin proteome of a single genomic locus by DNA sequencing.
Tessy Korthout, Deepani W Poramba-Liyanage, Ila van Kruijsbergen, Kitty F Verzijlbergen, Frank P A van Gemert, Tibor van Welsem, Fred van Leeuwen. PLoS Biol 2018
9
11


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.