A citation-based method for searching scientific literature

J Meyne, R L Ratliff, R K Moyzis. Proc Natl Acad Sci U S A 1989
Times Cited: 576







List of co-cited articles
1247 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Adaptive seeds tame genomic sequence comparison.
Szymon M Kiełbasa, Raymond Wan, Kengo Sato, Paul Horton, Martin C Frith. Genome Res 2011
538
1

Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm.
Haoyu Cheng, Gregory T Concepcion, Xiaowen Feng, Haowen Zhang, Heng Li. Nat Methods 2021
16
6

Characterization of a Y-specific duplication/insertion of the anti-Mullerian hormone type II receptor gene based on a chromosome-scale genome assembly of yellow perch, Perca flavescens.
Romain Feron, Margot Zahm, Cédric Cabau, Christophe Klopp, Céline Roques, Olivier Bouchez, Camille Eché, Sophie Valière, Cécile Donnadieu, Pierrick Haffray,[...]. Mol Ecol Resour 2020
13
7

Transitions between sex-determining systems in reptiles and amphibians.
Stephen D Sarre, Tariq Ezaz, Arthur Georges. Annu Rev Genomics Hum Genet 2011
76
1

Sex chromosomes in the spiny eel (Mastacembelus aculeatus) revealed by mitotic and meiotic analysis.
J D Liu, M S Yi, G Zhao, F Zhou, D Q Wang, Q X Yu. Cytogenet Genome Res 2002
11
9

Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom.
Neva C Durand, James T Robinson, Muhammad S Shamim, Ido Machol, Jill P Mesirov, Eric S Lander, Erez Lieberman Aiden. Cell Syst 2016
347
1


Proteomics. Tissue-based map of the human proteome.
Mathias Uhlén, Linn Fagerberg, Björn M Hallström, Cecilia Lindskog, Per Oksvold, Adil Mardinoglu, Åsa Sivertsson, Caroline Kampf, Evelina Sjöstedt, Anna Asplund,[...]. Science 2015
1

Simultaneous epigenetic perturbation and genome imaging reveal distinct roles of H3K9me3 in chromatin architecture and transcription.
Ying Feng, Yao Wang, Xiangnan Wang, Xiaohui He, Chen Yang, Ardalan Naseri, Thoru Pederson, Jing Zheng, Shaojie Zhang, Xiao Xiao,[...]. Genome Biol 2020
5
20

Related function of mouse SOX3, SOX9, and SRY HMG domains assayed by male sex determination.
D E Bergstrom, M Young, K H Albrecht, E M Eicher. Genesis 2000
65
1




Young sex chromosomes in plants and animals.
Deborah Charlesworth. New Phytol 2019
18
5



Aligning multiple genomic sequences with the threaded blockset aligner.
Mathieu Blanchette, W James Kent, Cathy Riemer, Laura Elnitski, Arian F A Smit, Krishna M Roskin, Robert Baertsch, Kate Rosenbloom, Hiram Clawson, Eric D Green,[...]. Genome Res 2004
895
1

Mammalian Y chromosomes retain widely expressed dosage-sensitive regulators.
Daniel W Bellott, Jennifer F Hughes, Helen Skaletsky, Laura G Brown, Tatyana Pyntikova, Ting-Jan Cho, Natalia Koutseva, Sara Zaghlul, Tina Graves, Susie Rock,[...]. Nature 2014
325
1

Chromosome-scale, haplotype-resolved assembly of human genomes.
Shilpa Garg, Arkarachai Fungtammasan, Andrew Carroll, Mike Chou, Anthony Schmitt, Xiang Zhou, Stephen Mac, Paul Peluso, Emily Hatas, Jay Ghurye,[...]. Nat Biotechnol 2021
14
7

CUT&Tag for efficient epigenomic profiling of small samples and single cells.
Hatice S Kaya-Okur, Steven J Wu, Christine A Codomo, Erica S Pledger, Terri D Bryson, Jorja G Henikoff, Kami Ahmad, Steven Henikoff. Nat Commun 2019
174
1


Towards complete and error-free genome assemblies of all vertebrate species.
Arang Rhie, Shane A McCarthy, Olivier Fedrigo, Joana Damas, Giulio Formenti, Sergey Koren, Marcela Uliano-Silva, William Chow, Arkarachai Fungtammasan, Juwan Kim,[...]. Nature 2021
20
5

Predicting the Landscape of Recombination Using Deep Learning.
Jeffrey R Adrion, Jared G Galloway, Andrew D Kern. Mol Biol Evol 2020
17
5

Identification of avian W-linked contigs by short-read sequencing.
Nancy Chen, Daniel W Bellott, David C Page, Andrew G Clark. BMC Genomics 2012
29
3

Model-based analysis of ChIP-Seq (MACS).
Yong Zhang, Tao Liu, Clifford A Meyer, Jérôme Eeckhoute, David S Johnson, Bradley E Bernstein, Chad Nusbaum, Richard M Myers, Myles Brown, Wei Li,[...]. Genome Biol 2008
1



Gateways to the FANTOM5 promoter level mammalian expression atlas.
Marina Lizio, Jayson Harshbarger, Hisashi Shimoji, Jessica Severin, Takeya Kasukawa, Serkan Sahin, Imad Abugessaisa, Shiro Fukuda, Fumi Hori, Sachi Ishikawa-Kato,[...]. Genome Biol 2015
315
1

Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
1

Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution.
Daniël P Melters, Keith R Bradnam, Hugh A Young, Natalie Telis, Michael R May, J Graham Ruby, Robert Sebra, Paul Peluso, John Eid, David Rank,[...]. Genome Biol 2013
194
1

WhatsHap: Weighted Haplotype Assembly for Future-Generation Sequencing Reads.
Murray Patterson, Tobias Marschall, Nadia Pisanti, Leo van Iersel, Leen Stougie, Gunnar W Klau, Alexander Schönhuth. J Comput Biol 2015
77
1

The structure, function and evolution of a complete human chromosome 8.
Glennis A Logsdon, Mitchell R Vollger, PingHsun Hsieh, Yafei Mao, Mikhail A Liskovykh, Sergey Koren, Sergey Nurk, Ludovica Mercuri, Philip C Dishuck, Arang Rhie,[...]. Nature 2021
8
12

Heterochromatin establishment during early mammalian development is regulated by pericentromeric RNA and characterized by non-repressive H3K9me3.
Adam Burton, Vincent Brochard, Carmen Galan, Elias R Ruiz-Morales, Quirze Rovira, Diego Rodriguez-Terrones, Kai Kruse, Stéphanie Le Gras, Vishnu S Udayakumar, Hang Gyeong Chin,[...]. Nat Cell Biol 2020
14
7


Model for evolution of Y chromosomes and dosage compensation.
B Charlesworth. Proc Natl Acad Sci U S A 1978
272
1

Y and W Chromosome Assemblies: Approaches and Discoveries.
Marta Tomaszkiewicz, Paul Medvedev, Kateryna D Makova. Trends Genet 2017
39
2

Two novel proteins recruited by synaptonemal complex protein 1 (SYCP1) are at the centre of meiosis.
Yael Costa, Robert Speed, Rupert Ollinger, Manfred Alsheimer, Colin A Semple, Philippe Gautier, Klio Maratou, Ivana Novak, Christer Höög, Ricardo Benavente,[...]. J Cell Sci 2005
133
1

Genetic and cytological analyses reveal the recombination landscape of a partially differentiated plant sex chromosome in kiwifruit.
S M Pilkington, J Tahir, E Hilario, S E Gardiner, D Chagné, A Catanach, J McCallum, L Jesson, L G Fraser, M A McNeilage,[...]. BMC Plant Biol 2019
9
11

An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues.
M Ryan Corces, Alexandro E Trevino, Emily G Hamilton, Peyton G Greenside, Nicholas A Sinnott-Armstrong, Sam Vesuna, Ansuman T Satpathy, Adam J Rubin, Kathleen S Montine, Beijing Wu,[...]. Nat Methods 2017
396
1


High-quality chromosome-level genomes of two tilapia species reveal their evolution of repeat sequences and sex chromosomes.
Wenjing Tao, Luohao Xu, Lin Zhao, Zexian Zhu, Xin Wu, Qianwen Min, Deshou Wang, Qi Zhou. Mol Ecol Resour 2021
6
16

Vision using multiple distinct rod opsins in deep-sea fishes.
Zuzana Musilova, Fabio Cortesi, Michael Matschiner, Wayne I L Davies, Jagdish Suresh Patel, Sara M Stieb, Fanny de Busserolles, Martin Malmstrøm, Ole K Tørresen, Celeste J Brown,[...]. Science 2019
48
2

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype.
Daehwan Kim, Joseph M Paggi, Chanhee Park, Christopher Bennett, Steven L Salzberg. Nat Biotechnol 2019
717
1

A novel mouse synaptonemal complex protein is essential for loading of central element proteins, recombination, and fertility.
Sabine Schramm, Johanna Fraune, Ronald Naumann, Abrahan Hernandez-Hernandez, Christer Höög, Howard J Cooke, Manfred Alsheimer, Ricardo Benavente. PLoS Genet 2011
102
1

Constitutive heterochromatin formation and transcription in mammals.
Nehmé Saksouk, Elisabeth Simboeck, Jérôme Déjardin. Epigenetics Chromatin 2015
217
1

The rice field eel as a model system for vertebrate sexual development.
H Cheng, Y Guo, Q Yu, R Zhou. Cytogenet Genome Res 2003
31
3

Chromosomal stasis in distinct families of marine Percomorpharia from South Atlantic.
Fabilene Gomes Paim, Leandro Aragão da Hora Almeida, Paulo Roberto Antunes de Mello Affonso, Patrícia Elda Sobrinho-Scudeler, Claudio Oliveira, Débora Diniz. Comp Cytogenet 2017
5
20

Haplotype-aware diplotyping from noisy long reads.
Jana Ebler, Marina Haukness, Trevor Pesout, Tobias Marschall, Benedict Paten. Genome Biol 2019
14
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.