A citation-based method for searching scientific literature

Zhong Deng, Julie Norseen, Andreas Wiedmer, Harold Riethman, Paul M Lieberman. Mol Cell 2009
Times Cited: 343







List of co-cited articles
1269 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Filia Is an ESC-Specific Regulator of DNA Damage Response and Safeguards Genomic Stability.
Bo Zhao, Wei-Dao Zhang, Ying-Liang Duan, Yong-Qing Lu, Yi-Xian Cun, Chao-Hui Li, Kun Guo, Wen-Hui Nie, Lei Li, Rugang Zhang,[...]. Cell Stem Cell 2015
24
4

Deficient DNA damage response and cell cycle checkpoints lead to accumulation of point mutations in human embryonic stem cells.
Nevila Hyka-Nouspikel, Joëlle Desmarais, Paul J Gokhale, Mark Jones, Mark Meuth, Peter W Andrews, Thierry Nouspikel. Stem Cells 2012
40
2

Open chromatin in pluripotency and reprogramming.
Alexandre Gaspar-Maia, Adi Alajem, Eran Meshorer, Miguel Ramalho-Santos. Nat Rev Mol Cell Biol 2011
354
1

A pH-driven transition of the cytoplasm from a fluid- to a solid-like state promotes entry into dormancy.
Matthias Christoph Munder, Daniel Midtvedt, Titus Franzmann, Elisabeth Nüske, Oliver Otto, Maik Herbig, Elke Ulbricht, Paul Müller, Anna Taubenberger, Shovamayee Maharana,[...]. Elife 2016
161
1

Identifying proteins bound to native mitotic ESC chromosomes reveals chromatin repressors are important for compaction.
Dounia Djeghloul, Bhavik Patel, Holger Kramer, Andrew Dimond, Chad Whilding, Karen Brown, Anne-Céline Kohler, Amelie Feytout, Nicolas Veland, James Elliott,[...]. Nat Commun 2020
3
33

Rad51 regulates cell cycle progression by preserving G2/M transition in mouse embryonic stem cells.
Sang-Wook Yoon, Dae-Kwan Kim, Keun Pil Kim, Kyung-Soon Park. Stem Cells Dev 2014
26
3

DNA double-strand breaks in heterochromatin elicit fast repair protein recruitment, histone H2AX phosphorylation and relocation to euchromatin.
Burkhard Jakob, Jörn Splinter, Sandro Conrad, Kay-Obbe Voss, Daniele Zink, Marco Durante, Markus Löbrich, Gisela Taucher-Scholz. Nucleic Acids Res 2011
189
1

Dynamics of DNA double-strand breaks revealed by clustering of damaged chromosome domains.
Jacob A Aten, Jan Stap, Przemek M Krawczyk, Carel H van Oven, Ron A Hoebe, Jeroen Essers, Roland Kanaar. Science 2004
352
1



Embryonic stem cell potency fluctuates with endogenous retrovirus activity.
Todd S Macfarlan, Wesley D Gifford, Shawn Driscoll, Karen Lettieri, Helen M Rowe, Dario Bonanomi, Amy Firth, Oded Singer, Didier Trono, Samuel L Pfaff. Nature 2012
518
1

Dissecting direct reprogramming through integrative genomic analysis.
Tarjei S Mikkelsen, Jacob Hanna, Xiaolan Zhang, Manching Ku, Marius Wernig, Patrick Schorderet, Bradley E Bernstein, Rudolf Jaenisch, Eric S Lander, Alexander Meissner. Nature 2008
1

Embryonic Stem Cells License a High Level of Dormant Origins to Protect the Genome against Replication Stress.
Xin Quan Ge, Jinah Han, Ee-Chun Cheng, Satoru Yamaguchi, Naoko Shima, Jean-Leon Thomas, Haifan Lin. Stem Cell Reports 2015
23
4

A short G1 phase imposes constitutive replication stress and fork remodelling in mouse embryonic stem cells.
Akshay K Ahuja, Karolina Jodkowska, Federico Teloni, Anna H Bizard, Ralph Zellweger, Raquel Herrador, Sagrario Ortega, Ian D Hickson, Matthias Altmeyer, Juan Mendez,[...]. Nat Commun 2016
88
1

Mouse development with a single E2F activator.
Shih-Yin Tsai, Rene Opavsky, Nidhi Sharma, Lizhao Wu, Shan Naidu, Eric Nolan, Enrique Feria-Arias, Cynthia Timmers, Jana Opavska, Alain de Bruin,[...]. Nature 2008
72
1

Chromatin in pluripotent embryonic stem cells and differentiation.
Eran Meshorer, Tom Misteli. Nat Rev Mol Cell Biol 2006
492
1

DNA Damage in Stem Cells.
Ilio Vitale, Gwenola Manic, Ruggero De Maria, Guido Kroemer, Lorenzo Galluzzi. Mol Cell 2017
124
1

Refining the telomere-telomerase hypothesis of aging and cancer.
S E Holt, J W Shay, W E Wright. Nat Biotechnol 1996
139
1

Chromatin regulatory mechanisms and therapeutic opportunities in cancer.
Alfredo M Valencia, Cigall Kadoch. Nat Cell Biol 2019
46
2

Telomere dysfunction cooperates with epigenetic alterations to impair murine embryonic stem cell fate commitment.
Mélanie Criqui, Aditi Qamra, Tsz Wai Chu, Monika Sharma, Julissa Tsao, Danielle A Henry, Dalia Barsyte-Lovejoy, Cheryl H Arrowsmith, Neil Winegarden, Mathieu Lupien,[...]. Elife 2020
3
33

Global chromatin architecture reflects pluripotency and lineage commitment in the early mouse embryo.
Kashif Ahmed, Hesam Dehghani, Peter Rugg-Gunn, Eden Fussner, Janet Rossant, David P Bazett-Jones. PLoS One 2010
166
1

Induction of pluripotent stem cells by defined factors is greatly improved by small-molecule compounds.
Danwei Huangfu, René Maehr, Wenjun Guo, Astrid Eijkelenboom, Melinda Snitow, Alice E Chen, Douglas A Melton. Nat Biotechnol 2008
1

Heterochromatin delays CRISPR-Cas9 mutagenesis but does not influence the outcome of mutagenic DNA repair.
Eirini M Kallimasioti-Pazi, Keerthi Thelakkad Chathoth, Gillian C Taylor, Alison Meynert, Tracy Ballinger, Martijn J E Kelder, Sébastien Lalevée, Ildem Sanli, Robert Feil, Andrew J Wood. PLoS Biol 2018
25
4

Telomere length is reset during early mammalian embryogenesis.
Sonja Schaetzlein, Andrea Lucas-Hahn, Erika Lemme, Wilfried A Kues, Martina Dorsch, Michael P Manns, Heiner Niemann, K Lenhard Rudolph. Proc Natl Acad Sci U S A 2004
132
1

Cyclin A is redundant in fibroblasts but essential in hematopoietic and embryonic stem cells.
Ilona Kalaszczynska, Yan Geng, Tadafumi Iino, Shin-ichi Mizuno, Yoon Choi, Ilona Kondratiuk, Daniel P Silver, Debra J Wolgemuth, Koichi Akashi, Piotr Sicinski. Cell 2009
147
1

Changes in chromatin structure and mobility in living cells at sites of DNA double-strand breaks.
Michael J Kruhlak, Arkady Celeste, Graham Dellaire, Oscar Fernandez-Capetillo, Waltraud G Müller, James G McNally, David P Bazett-Jones, André Nussenzweig. J Cell Biol 2006
376
1

ATR expands embryonic stem cell fate potential in response to replication stress.
Sina Atashpaz, Sara Samadi Shams, Javier Martin Gonzalez, Endre Sebestyén, Negar Arghavanifard, Andrea Gnocchi, Eliene Albers, Simone Minardi, Giovanni Faga, Paolo Soffientini,[...]. Elife 2020
5
20

Downregulation of histone methyltransferase genes SUV39H1 and SUV39H2 increases telomere length in embryonic stem-like cells and embryonic fibroblasts in pigs.
Thanh Quang Dang-Nguyen, Seiki Haraguchi, Tadashi Furusawa, Tamas Somfai, Masahiro Kaneda, Shinya Watanabe, Satoshi Akagi, Kazuhiro Kikuchi, Atsushi Tajima, Takashi Nagai. J Reprod Dev 2013
10
10

And yet, it moves: nuclear and chromatin dynamics of a heterochromatic double-strand break.
P Christopher Caridi, Laetitia Delabaere, Grzegorz Zapotoczny, Irene Chiolo. Philos Trans R Soc Lond B Biol Sci 2017
27
3

Conservation and innovation in the DUX4-family gene network.
Jennifer L Whiddon, Ashlee T Langford, Chao-Jen Wong, Jun Wen Zhong, Stephen J Tapscott. Nat Genet 2017
116
1

Stem cells: the pursuit of genomic stability.
Saranya P Wyles, Emma B Brandt, Timothy J Nelson. Int J Mol Sci 2014
15
6

DNA damage-induced cell death by apoptosis.
Wynand P Roos, Bernd Kaina. Trends Mol Med 2006
946
1


Maintenance of genome integrity and active homologous recombination in embryonic stem cells.
Eui-Hwan Choi, Seobin Yoon, Young Eun Koh, Young-Jin Seo, Keun Pil Kim. Exp Mol Med 2020
3
33

DUX-family transcription factors regulate zygotic genome activation in placental mammals.
Alberto De Iaco, Evarist Planet, Andrea Coluccio, Sonia Verp, Julien Duc, Didier Trono. Nat Genet 2017
184
1



Long-Range Enhancer Interactions Are Prevalent in Mouse Embryonic Stem Cells and Are Reorganized upon Pluripotent State Transition.
Clara Lopes Novo, Biola-Maria Javierre, Jonathan Cairns, Anne Segonds-Pichon, Steven W Wingett, Paula Freire-Pritchett, Mayra Furlan-Magaril, Stefan Schoenfelder, Peter Fraser, Peter J Rugg-Gunn. Cell Rep 2018
43
2

Proteomic and genomic approaches reveal critical functions of H3K9 methylation and heterochromatin protein-1γ in reprogramming to pluripotency.
Rupa Sridharan, Michelle Gonzales-Cope, Constantinos Chronis, Giancarlo Bonora, Robin McKee, Chengyang Huang, Sanjeet Patel, David Lopez, Nilamadhab Mishra, Matteo Pellegrini,[...]. Nat Cell Biol 2013
136
1

Global transcription in pluripotent embryonic stem cells.
Sol Efroni, Radharani Duttagupta, Jill Cheng, Hesam Dehghani, Daniel J Hoeppner, Chandravanu Dash, David P Bazett-Jones, Stuart Le Grice, Ronald D G McKay, Kenneth H Buetow,[...]. Cell Stem Cell 2008
438
1

Chd1 regulates open chromatin and pluripotency of embryonic stem cells.
Alexandre Gaspar-Maia, Adi Alajem, Fanny Polesso, Rupa Sridharan, Mike J Mason, Amy Heidersbach, João Ramalho-Santos, Michael T McManus, Kathrin Plath, Eran Meshorer,[...]. Nature 2009
346
1

TRF2-independent chromosome end protection during pluripotency.
Phil Ruis, David Van Ly, Valerie Borel, Georgia R Kafer, Afshan McCarthy, Steven Howell, Robert Blassberg, Ambrosius P Snijders, James Briscoe, Kathy K Niakan,[...]. Nature 2021
5
20

Transient bursts of Zscan4 expression are accompanied by the rapid derepression of heterochromatin in mouse embryonic stem cells.
Tomohiko Akiyama, Li Xin, Mayumi Oda, Alexei A Sharov, Misa Amano, Yulan Piao, J Scotty Cadet, Dawood B Dudekula, Yong Qian, Weidong Wang,[...]. DNA Res 2015
43
2

Citrullination regulates pluripotency and histone H1 binding to chromatin.
Maria A Christophorou, Gonçalo Castelo-Branco, Richard P Halley-Stott, Clara Slade Oliveira, Remco Loos, Aliaksandra Radzisheuskaya, Kerri A Mowen, Paul Bertone, José C R Silva, Magdalena Zernicka-Goetz,[...]. Nature 2014
206
1

The pluripotency factor Nanog regulates pericentromeric heterochromatin organization in mouse embryonic stem cells.
Clara Lopes Novo, Calvin Tang, Kashif Ahmed, Ugljesa Djuric, Eden Fussner, Nicholas P Mullin, Natasha P Morgan, Jasvinder Hayre, Arnold R Sienerth, Sarah Elderkin,[...]. Genes Dev 2016
30
3

Tbx3 improves the germ-line competency of induced pluripotent stem cells.
Jianyong Han, Ping Yuan, Henry Yang, Jinqiu Zhang, Boon Seng Soh, Pin Li, Siew Lan Lim, Suying Cao, Junliang Tay, Yuriy L Orlov,[...]. Nature 2010
201
1

TRF2-mediated telomere protection is dispensable in pluripotent stem cells.
Marta Markiewicz-Potoczny, Anastasia Lobanova, Anisha M Loeb, Oktay Kirak, Teresa Olbrich, Sergio Ruiz, Eros Lazzerini Denchi. Nature 2021
5
20


Double-strand breaks in heterochromatin move outside of a dynamic HP1a domain to complete recombinational repair.
Irene Chiolo, Aki Minoda, Serafin U Colmenares, Aris Polyzos, Sylvain V Costes, Gary H Karpen. Cell 2011
322
1

A single double-strand break system reveals repair dynamics and mechanisms in heterochromatin and euchromatin.
Aniek Janssen, Gregory A Breuer, Eva K Brinkman, Annelot I van der Meulen, Sean V Borden, Bas van Steensel, Ranjit S Bindra, Jeannine R LaRocque, Gary H Karpen. Genes Dev 2016
47
2


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.