A citation-based method for searching scientific literature

William J Zacharias, David B Frank, Jarod A Zepp, Michael P Morley, Farrah A Alkhaleel, Jun Kong, Su Zhou, Edward Cantu, Edward E Morrisey. Nature 2018
Times Cited: 241







List of co-cited articles
1147 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


An Alphavirus-derived replicon RNA vaccine induces SARS-CoV-2 neutralizing antibody and T cell responses in mice and nonhuman primates.
Jesse H Erasmus, Amit P Khandhar, Megan A O'Connor, Alexandra C Walls, Emily A Hemann, Patience Murapa, Jacob Archer, Shanna Leventhal, James T Fuller, Thomas B Lewis,[...]. Sci Transl Med 2020
61
1

2D and 3D cell cultures - a comparison of different types of cancer cell cultures.
Marta Kapałczyńska, Tomasz Kolenda, Weronika Przybyła, Maria Zajączkowska, Anna Teresiak, Violetta Filas, Matthew Ibbs, Renata Bliźniak, Łukasz Łuczewski, Katarzyna Lamperska. Arch Med Sci 2018
234
1

Potential Rapid Diagnostics, Vaccine and Therapeutics for 2019 Novel Coronavirus (2019-nCoV): A Systematic Review.
Junxiong Pang, Min Xian Wang, Ian Yi Han Ang, Sharon Hui Xuan Tan, Ruth Frances Lewis, Jacinta I-Pei Chen, Ramona A Gutierrez, Sylvia Xiao Wei Gwee, Pearleen Ee Yong Chua, Qian Yang,[...]. J Clin Med 2020
227
1

Use of coated silver nanoparticles to understand the relationship of particle dissolution and bioavailability to cell and lung toxicological potential.
Xiang Wang, Zhaoxia Ji, Chong Hyun Chang, Haiyuan Zhang, Meiying Wang, Yu-Pei Liao, Sijie Lin, Huan Meng, Ruibin Li, Bingbing Sun,[...]. Small 2014
158
1

A 3-D organoid kidney culture model engineered for high-throughput nephrotoxicity assays.
Anna I Astashkina, Brenda K Mann, Glenn D Prestwich, David W Grainger. Biomaterials 2012
57
1

Nanoparticle Vaccines Adopting Virus-like Features for Enhanced Immune Potentiation.
Saborni Chattopadhyay, Jui-Yi Chen, Hui-Wen Chen, Che-Ming Jack Hu. Nanotheranostics 2017
53
1

Nanoparticle Toxicology.
Wen Yang, Lin Wang, Evan M Mettenbrink, Paul L DeAngelis, Stefan Wilhelm. Annu Rev Pharmacol Toxicol 2021
10
10


Transport of ultrasmall gold nanoparticles (2 nm) across the blood-brain barrier in a six-cell brain spheroid model.
Viktoriya Sokolova, Gehad Mekky, Selina Beatrice van der Meer, Michael C Seeds, Anthony J Atala, Matthias Epple. Sci Rep 2020
8
12

An Early-Stage Atherosclerosis Research Model Based on Microfluidics.
Wenfu Zheng, Rong Huang, Bo Jiang, Yuyun Zhao, Wei Zhang, Xingyu Jiang. Small 2016
35
2

Differentiation of Retinal Organoids from Human Pluripotent Stem Cells.
Valeria Chichagova, Birthe Dorgau, Majed Felemban, Maria Georgiou, Lyle Armstrong, Majlinda Lako. Curr Protoc Stem Cell Biol 2019
12
8

High-throughput screening of tyrosine kinase inhibitor cardiotoxicity with human induced pluripotent stem cells.
Arun Sharma, Paul W Burridge, Wesley L McKeithan, Ricardo Serrano, Praveen Shukla, Nazish Sayed, Jared M Churko, Tomoya Kitani, Haodi Wu, Alexandra Holmström,[...]. Sci Transl Med 2017
185
1

The branching programme of mouse lung development.
Ross J Metzger, Ophir D Klein, Gail R Martin, Mark A Krasnow. Nature 2008
464
1

TET2-Mediated Spatiotemporal Changes of 5-Hydroxymethylcytosine During Organogenesis in the Late Mouse Fetus.
Xiangjun Li, Fangfang Xie, Junfeng Jin, Yuqiong Wu, Ziwei Luo, Fengxue Zhang, Saixia Zhang, Dongfeng Chen, Aijun Liu. Anat Rec (Hoboken) 2019
3
33

Characterizing the genetic basis of methylome diversity in histologically normal human lung tissue.
Jianxin Shi, Crystal N Marconett, Jubao Duan, Paula L Hyland, Peng Li, Zhaoming Wang, William Wheeler, Beiyun Zhou, Mihaela Campan, Diane S Lee,[...]. Nat Commun 2014
93
1

MCRIP1 promotes the expression of lung-surfactant proteins in mice by disrupting CtBP-mediated epigenetic gene silencing.
Jane S Weng, Takanori Nakamura, Hisashi Moriizumi, Hiroshi Takano, Ryoji Yao, Mutsuhiro Takekawa. Commun Biol 2019
2
50

Stage-dependent and locus-specific role of histone demethylase Jumonji D3 (JMJD3) in the embryonic stages of lung development.
Qingtian Li, Helen Y Wang, Iouri Chepelev, Qingyuan Zhu, Gang Wei, Keji Zhao, Rong-Fu Wang. PLoS Genet 2014
39
2

Integrating multiomics longitudinal data to reconstruct networks underlying lung development.
Jun Ding, Farida Ahangari, Celia R Espinoza, Divya Chhabra, Teodora Nicola, Xiting Yan, Charitharth V Lal, James S Hagood, Naftali Kaminski, Ziv Bar-Joseph,[...]. Am J Physiol Lung Cell Mol Physiol 2019
10
10

Alterations in gene expression and DNA methylation during murine and human lung alveolar septation.
Alain Cuna, Brian Halloran, Ona Faye-Petersen, David Kelly, David K Crossman, Xiangqin Cui, Kusum Pandit, Naftali Kaminski, Soumyaroop Bhattacharya, Ausaf Ahmad,[...]. Am J Respir Cell Mol Biol 2015
38
2

Global, integrated analysis of methylomes and transcriptomes from laser capture microdissected bronchial and alveolar cells in human lung.
Xiao Dong, Miao Shi, Moonsook Lee, Rafael Toro, Silvia Gravina, Weiguo Han, Shoya Yasuda, Tao Wang, Zhengdong Zhang, Jan Vijg,[...]. Epigenetics 2018
4
25


Regulation of YAP by mTOR and autophagy reveals a therapeutic target of tuberous sclerosis complex.
Ning Liang, Chi Zhang, Patricia Dill, Ganna Panasyuk, Delphine Pion, Vonda Koka, Morgan Gallazzini, Eric N Olson, Hilaire Lam, Elizabeth P Henske,[...]. J Exp Med 2014
118
1

YAP mediates crosstalk between the Hippo and PI(3)K–TOR pathways by suppressing PTEN via miR-29.
Karen Tumaneng, Karin Schlegelmilch, Ryan C Russell, Dean Yimlamai, Harihar Basnet, Navin Mahadevan, Julien Fitamant, Nabeel Bardeesy, Fernando D Camargo, Kun-Liang Guan. Nat Cell Biol 2012
310
1

AP-3-dependent targeting of flippase ATP8A1 to lamellar bodies suppresses activation of YAP in alveolar epithelial type 2 cells.
Seunghyi Kook, Ping Wang, Shufang Meng, Christopher S Jetter, Jennifer M S Sucre, John T Benjamin, Jason J Gokey, Hayley A Hanby, Alexa Jaume, Laura Goetzl,[...]. Proc Natl Acad Sci U S A 2021
2
50

Sphingosine Kinase 1/S1P Signaling Contributes to Pulmonary Fibrosis by Activating Hippo/YAP Pathway and Mitochondrial Reactive Oxygen Species in Lung Fibroblasts.
Long Shuang Huang, Tara Sudhadevi, Panfeng Fu, Prasanth-Kumar Punathil-Kannan, David Lenin Ebenezer, Ramaswamy Ramchandran, Vijay Putherickal, Paul Cheresh, Guofei Zhou, Alison W Ha,[...]. Int J Mol Sci 2020
21
4

A critical role for the mTORC2 pathway in lung fibrosis.
Wenteh Chang, Ke Wei, Lawrence Ho, Gerald J Berry, Susan S Jacobs, Cheryl H Chang, Glenn D Rosen. PLoS One 2014
36
2

The Role of Immune and Inflammatory Cells in Idiopathic Pulmonary Fibrosis.
Omkar Desai, Julia Winkler, Maksym Minasyan, Erica L Herzog. Front Med (Lausanne) 2018
86
1

YAP regulates alveolar epithelial cell differentiation and AGER via NFIB/KLF5/NKX2-1.
Jason J Gokey, John Snowball, Anusha Sridharan, Parvathi Sudha, Joseph A Kitzmiller, Yan Xu, Jeffrey A Whitsett. iScience 2021
1
100

Evolving Perspectives on Innate Immune Mechanisms of IPF.
Genta Ishikawa, Angela Liu, Erica L Herzog. Front Mol Biosci 2021
2
50

Endothelial cells recruit macrophages and contribute to a fibrotic milieu in bleomycin lung injury.
Heather G Leach, Izabela Chrobak, Rong Han, Maria Trojanowska. Am J Respir Cell Mol Biol 2013
37
2

TBK1 regulates YAP/TAZ and fibrogenic fibroblast activation.
Aja Aravamudhan, Andrew J Haak, Kyoung Moo Choi, Jeffrey A Meridew, Nunzia Caporarello, Dakota L Jones, Qi Tan, Giovanni Ligresti, Daniel J Tschumperlin. Am J Physiol Lung Cell Mol Physiol 2020
4
25

Modeling Fibrosis in Three-Dimensional Organoids Reveals New Epithelial Restraints on Fibroblasts.
Diptiman Chanda, Victor J Thannickal. Am J Respir Cell Mol Biol 2019
2
50

Changes in pulmonary endothelial cell properties during bleomycin-induced pulmonary fibrosis.
Shinpei Kato, Naoki Inui, Akio Hakamata, Yuzo Suzuki, Noriyuki Enomoto, Tomoyuki Fujisawa, Yutaro Nakamura, Hiroshi Watanabe, Takafumi Suda. Respir Res 2018
15
6

YAP Partially Reprograms Chromatin Accessibility to Directly Induce Adult Cardiogenesis In Vivo.
Tanner O Monroe, Matthew C Hill, Yuka Morikawa, John P Leach, Todd Heallen, Shuyi Cao, Peter H L Krijger, Wouter de Laat, Xander H T Wehrens, George G Rodney,[...]. Dev Cell 2019
70
1

Preventing Engrailed-1 activation in fibroblasts yields wound regeneration without scarring.
Shamik Mascharak, Heather E desJardins-Park, Michael F Davitt, Michelle Griffin, Mimi R Borrelli, Alessandra L Moore, Kellen Chen, Bryan Duoto, Malini Chinta, Deshka S Foster,[...]. Science 2021
26
3

Crosstalk between Hippo and TGFβ: Subcellular Localization of YAP/TAZ/Smad Complexes.
Karin Grannas, Linda Arngården, Peter Lönn, Magdalena Mazurkiewicz, Andries Blokzijl, Agata Zieba, Ola Söderberg. J Mol Biol 2015
75
1

YAP expression in endothelial cells prevents ventilator-induced lung injury.
Kai Su, Jianguo Wang, Yang Lv, Ming Tian, You-Yang Zhao, Richard D Minshall, Guochang Hu. Am J Physiol Lung Cell Mol Physiol 2021
3
33

YAP repression of the WNT3 gene controls hESC differentiation along the cardiac mesoderm lineage.
Conchi Estarás, Hui-Ting Hsu, Ling Huang, Katherine A Jones. Genes Dev 2017
24
4

Efficacy of pirfenidone in patients with idiopathic pulmonary fibrosis with more preserved lung function.
Carlo Albera, Ulrich Costabel, Elizabeth A Fagan, Marilyn K Glassberg, Eduard Gorina, Lisa Lancaster, David J Lederer, Steven D Nathan, Dominique Spirig, Jeff J Swigris. Eur Respir J 2016
82
1

GPCR-induced YAP activation sensitizes fibroblasts to profibrotic activity of TGFβ1.
Katarina Zmajkovicova, Yasmina Bauer, Katalin Menyhart, Marie Schnoebelen, Diego Freti, Maxime Boucher, Bérengère Renault, Rolf Studer, Magdalena Birker-Robaczewska, Axel Klenk,[...]. PLoS One 2020
7
14

YAP/TAZ regulates TGF-β/Smad3 signaling by induction of Smad7 via AP-1 in human skin dermal fibroblasts.
Zhaoping Qin, Wei Xia, Gary J Fisher, John J Voorhees, Taihao Quan. Cell Commun Signal 2018
45
2

YAP1/Twist promotes fibroblast activation and lung fibrosis that conferred by miR-15a loss in IPF.
Yingzhun Chen, Xiaoguang Zhao, Jian Sun, Wei Su, Lu Zhang, Yingnan Li, Yingqi Liu, Lijia Zhang, Yanjie Lu, Hongli Shan,[...]. Cell Death Differ 2019
23
4

Screening for YAP Inhibitors Identifies Statins as Modulators of Fibrosis.
Daniela M Santos, Lorena Pantano, Gina Pronzati, Paula Grasberger, Clemens K Probst, Katharine E Black, Jillian J Spinney, Lida P Hariri, Royale Nichols, Yufei Lin,[...]. Am J Respir Cell Mol Biol 2020
8
12

Integrating single-cell and spatial transcriptomics to elucidate intercellular tissue dynamics.
Sophia K Longo, Margaret G Guo, Andrew L Ji, Paul A Khavari. Nat Rev Genet 2021
10
10

Organoid: a powerful tool to study lung regeneration and disease.
Tiantian Lu, Yiyuan Cao, Peng Zhao, Shengxi Shen, Ying Xi. Cell Regen 2021
2
50

Evolution of air breathing: oxygen homeostasis and the transitions from water to land and sky.
Connie C W Hsia, Anke Schmitz, Markus Lambertz, Steven F Perry, John N Maina. Compr Physiol 2013
75
1

Basal cells of the human adult airway surface epithelium retain transit-amplifying cell properties.
Rodolphe Hajj, Thomas Baranek, Richard Le Naour, Pierre Lesimple, Edith Puchelle, Christelle Coraux. Stem Cells 2007
100
1

Airway basal stem cells reutilize the embryonic proliferation regulator, Tgfβ-Id2 axis, for tissue regeneration.
Hirofumi Kiyokawa, Akira Yamaoka, Chisa Matsuoka, Tomoko Tokuhara, Takaya Abe, Mitsuru Morimoto. Dev Cell 2021
3
33

Expansion of Human Airway Basal Stem Cells and Their Differentiation as 3D Tracheospheres.
Robert E Hynds, Colin R Butler, Sam M Janes, Adam Giangreco. Methods Mol Biol 2019
13
7



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.