A citation-based method for searching scientific literature

Matthias Groh, Michele M P Lufino, Richard Wade-Martins, Natalia Gromak. PLoS Genet 2014
Times Cited: 185







List of co-cited articles
1634 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Recognition of RNA polymerase II and transcription bubbles by XPG, CSB, and TFIIH: insights for transcription-coupled repair and Cockayne Syndrome.
Altaf H Sarker, Susan E Tsutakawa, Seth Kostek, Cliff Ng, David S Shin, Marian Peris, Eric Campeau, John A Tainer, Eva Nogales, Priscilla K Cooper. Mol Cell 2005
156
1

Architecture of the RNA polymerase-Spt4/5 complex and basis of universal transcription processivity.
Fuensanta W Martinez-Rucobo, Sarah Sainsbury, Alan C M Cheung, Patrick Cramer. EMBO J 2011
176
1

Genome-wide analysis of human global and transcription-coupled excision repair of UV damage at single-nucleotide resolution.
Jinchuan Hu, Sheera Adar, Christopher P Selby, Jason D Lieb, Aziz Sancar. Genes Dev 2015
129
1

The Cockayne syndrome group A gene encodes a WD repeat protein that interacts with CSB protein and a subunit of RNA polymerase II TFIIH.
K A Henning, L Li, N Iyer, L D McDaniel, M S Reagan, R Legerski, R A Schultz, M Stefanini, A R Lehmann, L V Mayne,[...]. Cell 1995
376
1

Structure of activated transcription complex Pol II-DSIF-PAF-SPT6.
Seychelle M Vos, Lucas Farnung, Marc Boehning, Christoph Wigge, Andreas Linden, Henning Urlaub, Patrick Cramer. Nature 2018
124
1

Transcription-Coupled DNA Repair: From Mechanism to Human Disorder.
Diana van den Heuvel, Yana van der Weegen, Daphne E C Boer, Tomoo Ogi, Martijn S Luijsterburg. Trends Cell Biol 2021
3
33

Structural basis of TFIIH activation for nucleotide excision repair.
Goran Kokic, Aleksandar Chernev, Dimitry Tegunov, Christian Dienemann, Henning Urlaub, Patrick Cramer. Nat Commun 2019
47
2


CPD damage recognition by transcribing RNA polymerase II.
Florian Brueckner, Ulrich Hennecke, Thomas Carell, Patrick Cramer. Science 2007
163
1

Mechanism of translesion transcription by RNA polymerase II and its role in cellular resistance to DNA damage.
Celine Walmacq, Alan C M Cheung, Maria L Kireeva, Lucyna Lubkowska, Chengcheng Ye, Deanna Gotte, Jeffrey N Strathern, Thomas Carell, Patrick Cramer, Mikhail Kashlev. Mol Cell 2012
88
1

Heavy transcription of yeast genes correlates with differential loss of histone H2B relative to H4 and queued RNA polymerases.
Hope A Cole, Josefina Ocampo, James R Iben, Răzvan V Chereji, David J Clark. Nucleic Acids Res 2014
32
3

The molecular basis of CRL4DDB2/CSA ubiquitin ligase architecture, targeting, and activation.
Eric S Fischer, Andrea Scrima, Kerstin Böhm, Syota Matsumoto, Gondichatnahalli M Lingaraju, Mahamadou Faty, Takeshi Yasuda, Simone Cavadini, Mitsuo Wakasugi, Fumio Hanaoka,[...]. Cell 2011
263
1


DNA Repair Syndromes and Cancer: Insights Into Genetics and Phenotype Patterns.
Richa Sharma, Sara Lewis, Marcin W Wlodarski. Front Pediatr 2020
3
33


Histone H1 couples initiation and amplification of ubiquitin signalling after DNA damage.
Tina Thorslund, Anita Ripplinger, Saskia Hoffmann, Thomas Wild, Michael Uckelmann, Bine Villumsen, Takeo Narita, Titia K Sixma, Chunaram Choudhary, Simon Bekker-Jensen,[...]. Nature 2015
207
1

Complete absence of Cockayne syndrome group B gene product gives rise to UV-sensitive syndrome but not Cockayne syndrome.
Katsuyoshi Horibata, Yuka Iwamoto, Isao Kuraoka, Nicolaas G J Jaspers, Akihiro Kurimasa, Mitsuo Oshimura, Masamitsu Ichihashi, Kiyoji Tanaka. Proc Natl Acad Sci U S A 2004
125
1

Divide and conquer: nucleotide excision repair battles cancer and ageing.
James R Mitchell, Jan H J Hoeijmakers, Laura J Niedernhofer. Curr Opin Cell Biol 2003
109
1

Defective transcription of ATF3 responsive genes, a marker for Cockayne Syndrome.
Alexey Epanchintsev, Marc-Alexander Rauschendorf, Federico Costanzo, Nadege Calmels, Cathy Obringer, Alain Sarasin, Frederic Coin, Vincent Laugel, Jean-Marc Egly. Sci Rep 2020
6
16

The long unwinding road: XPB and XPD helicases in damaged DNA opening.
Valentyn Oksenych, Frédéric Coin. Cell Cycle 2010
49
2

ELOF1 is a transcription-coupled DNA repair factor that directs RNA polymerase II ubiquitylation.
Yana van der Weegen, Klaas de Lint, Diana van den Heuvel, Yuka Nakazawa, Tycho E T Mevissen, Janne J M van Schie, Marta San Martin Alonso, Daphne E C Boer, Román González-Prieto, Ishwarya V Narayanan,[...]. Nat Cell Biol 2021
3
33


The DNA damage response to transcription stress.
Hannes Lans, Jan H J Hoeijmakers, Wim Vermeulen, Jurgen A Marteijn. Nat Rev Mol Cell Biol 2019
60
1

DNA repair and recovery of RNA synthesis following exposure to ultraviolet light are delayed in long genes.
Leonardo C Andrade-Lima, Artur Veloso, Michelle T Paulsen, Carlos F M Menck, Mats Ljungman. Nucleic Acids Res 2015
43
2

p38-MK2 signaling axis regulates RNA metabolism after UV-light-induced DNA damage.
Marina E Borisova, Andrea Voigt, Maxim A X Tollenaere, Sanjeeb Kumar Sahu, Thomas Juretschke, Nastasja Kreim, Niels Mailand, Chunaram Choudhary, Simon Bekker-Jensen, Masato Akutsu,[...]. Nat Commun 2018
29
3

Nijmegen Breakage Syndrome: Clinical and Immunological Features, Long-Term Outcome and Treatment Options - a Retrospective Analysis.
Beata Wolska-Kuśnierz, Hanna Gregorek, Krystyna Chrzanowska, Barbara Piątosa, Barbara Pietrucha, Edyta Heropolitańska-Pliszka, Małgorzata Pac, Maja Klaudel-Dreszler, Larysa Kostyuchenko, Srdjan Pasic,[...]. J Clin Immunol 2015
41
2

The ubiquitin ligase activity in the DDB2 and CSA complexes is differentially regulated by the COP9 signalosome in response to DNA damage.
Regina Groisman, Jolanta Polanowska, Isao Kuraoka, Jun-ichi Sawada, Masafumi Saijo, Ronny Drapkin, Alexei F Kisselev, Kiyoji Tanaka, Yoshihiro Nakatani. Cell 2003
551
1


Disorders of nucleotide excision repair: the genetic and molecular basis of heterogeneity.
James E Cleaver, Ernest T Lam, Ingrid Revet. Nat Rev Genet 2009
249
1


Nucleotide excision repair driven by the dissociation of CAK from TFIIH.
Frédéric Coin, Valentyn Oksenych, Vincent Mocquet, Stefanie Groh, Christine Blattner, Jean Marc Egly. Mol Cell 2008
108
1

Noncanonical ATM Activation and Signaling in Response to Transcription-Blocking DNA Damage.
Jurgen A Marteijn, Wim Vermeulen, Maria Tresini. Methods Mol Biol 2017
4
25

Paf1C regulates RNA polymerase II progression by modulating elongation rate.
Liming Hou, Yating Wang, Yu Liu, Nan Zhang, Ilya Shamovsky, Evgeny Nudler, Bin Tian, Brian David Dynlacht. Proc Natl Acad Sci U S A 2019
24
4

Dissecting regulatory pathways for transcription recovery following DNA damage reveals a non-canonical function of the histone chaperone HIRA.
Déborah Bouvier, Juliette Ferrand, Odile Chevallier, Michelle T Paulsen, Mats Ljungman, Sophie E Polo. Nat Commun 2021
1
100

Major Roles for Pyrimidine Dimers, Nucleotide Excision Repair, and ATR in the Alternative Splicing Response to UV Irradiation.
Manuel J Muñoz, Nicolás Nieto Moreno, Luciana E Giono, Adrián E Cambindo Botto, Gwendal Dujardin, Giulia Bastianello, Stefania Lavore, Antonio Torres-Méndez, Carlos F M Menck, Benjamin J Blencowe,[...]. Cell Rep 2017
26
3

Formation and repair of interstrand cross-links in DNA.
David M Noll, Tracey McGregor Mason, Paul S Miller. Chem Rev 2006
319
1

Mutations in SPRTN cause early onset hepatocellular carcinoma, genomic instability and progeroid features.
Davor Lessel, Bruno Vaz, Swagata Halder, Paul J Lockhart, Ivana Marinovic-Terzic, Jaime Lopez-Mosqueda, Melanie Philipp, Joe C H Sim, Katherine R Smith, Judith Oehler,[...]. Nat Genet 2014
109
1

DNA-protein crosslinks: their induction, repair, and biological consequences.
Sharon Barker, Michael Weinfeld, David Murray. Mutat Res 2005
212
1

Direct cellular responses to platinum-induced DNA damage.
Yongwon Jung, Stephen J Lippard. Chem Rev 2007
772
1



Genotype-phenotype associations in Fanconi anemia: A literature review.
Moisés O Fiesco-Roa, Neelam Giri, Lisa J McReynolds, Ana F Best, Blanche P Alter. Blood Rev 2019
33
3

Mutations in UVSSA cause UV-sensitive syndrome and destabilize ERCC6 in transcription-coupled DNA repair.
Xue Zhang, Katsuyoshi Horibata, Masafumi Saijo, Chie Ishigami, Akiko Ukai, Shin-ichiro Kanno, Hidetoshi Tahara, Edward G Neilan, Masamitsu Honma, Takehiko Nohmi,[...]. Nat Genet 2012
133
1

A CSB-PAF1C axis restores processive transcription elongation after DNA damage repair.
Diana van den Heuvel, Cornelia G Spruijt, Román González-Prieto, Angela Kragten, Michelle T Paulsen, Di Zhou, Haoyu Wu, Katja Apelt, Yana van der Weegen, Kevin Yang,[...]. Nat Commun 2021
4
25

UV-sensitive syndrome protein UVSSA recruits USP7 to regulate transcription-coupled repair.
Petra Schwertman, Anna Lagarou, Dick H W Dekkers, Anja Raams, Adriana C van der Hoek, Charlie Laffeber, Jan H J Hoeijmakers, Jeroen A A Demmers, Maria Fousteri, Wim Vermeulen,[...]. Nat Genet 2012
140
1

Mutations in UVSSA cause UV-sensitive syndrome and impair RNA polymerase IIo processing in transcription-coupled nucleotide-excision repair.
Yuka Nakazawa, Kensaku Sasaki, Norisato Mitsutake, Michiko Matsuse, Mayuko Shimada, Tiziana Nardo, Yoshito Takahashi, Kaname Ohyama, Kosei Ito, Hiroyuki Mishima,[...]. Nat Genet 2012
107
1

Regulatory interplay of Cockayne syndrome B ATPase and stress-response gene ATF3 following genotoxic stress.
Ulrik Kristensen, Alexey Epanchintsev, Marc-Alexander Rauschendorf, Vincent Laugel, Tinna Stevnsner, Vilhelm A Bohr, Frédéric Coin, Jean-Marc Egly. Proc Natl Acad Sci U S A 2013
25
4

Anthracyclines induce double-strand DNA breaks at active gene promoters.
Fan Yang, Christopher J Kemp, Steven Henikoff. Mutat Res 2015
51
1

Transcriptional activation of yeast genes disrupts intragenic nucleosome phasing.
Feng Cui, Hope A Cole, David J Clark, Victor B Zhurkin. Nucleic Acids Res 2012
25
4


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.