A citation-based method for searching scientific literature

Titia de Lange. Annu Rev Genet 2018
Times Cited: 181







List of co-cited articles
1337 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Cohesin regulates VSG monoallelic expression in trypanosomes.
David Landeira, Jean-Mathieu Bart, Daria Van Tyne, Miguel Navarro. J Cell Biol 2009
55
1


PAR-TERRA is the main contributor to telomeric repeat-containing RNA transcripts in normal and cancer mouse cells.
Nikenza Viceconte, Axelle Loriot, Patrícia Lona Abreu, Marion Scheibe, Albert Fradera Sola, Falk Butter, Charles De Smet, Claus M Azzalin, Nausica Arnoult, Anabelle Decottignies. RNA 2021
1
100

Ku heterodimer-independent end joining in Trypanosoma brucei cell extracts relies upon sequence microhomology.
Peter Burton, David J McBride, Jonathan M Wilkes, J David Barry, Richard McCulloch. Eukaryot Cell 2007
40
2



Trypanosoma brucei RAP1 Has Essential Functional Domains That Are Required for Different Protein Interactions.
Marjia Afrin, Hanadi Kishmiri, Ranjodh Sandhu, M A G Rabbani, Bibo Li. mSphere 2020
3
33

RNA-DNA Hybrids Support Recombination-Based Telomere Maintenance in Fission Yeast.
Yan Hu, Henrietta W Bennett, Na Liu, Martin Moravec, Jessica F Williams, Claus M Azzalin, Megan C King. Genetics 2019
1
100

Ku is important for telomere maintenance, but not for differential expression of telomeric VSG genes, in African trypanosomes.
Colin Conway, Richard McCulloch, Michael L Ginger, Nicholas P Robinson, Alison Browitt, J David Barry. J Biol Chem 2002
56
1


Telomere and Subtelomere R-loops and Antigenic Variation in Trypanosomes.
Arpita Saha, Vishal P Nanavaty, Bibo Li. J Mol Biol 2020
6
16

Organization of telomeres during the cell and life cycles of Trypanosoma brucei.
D Pérez-Morga, A Amiguet-Vercher, D Vermijlen, E Pays. J Eukaryot Microbiol 2001
22
4

Selective inhibition of RNA polymerase I transcription as a potential approach to treat African trypanosomiasis.
Louise E Kerry, Elaine E Pegg, Donald P Cameron, James Budzak, Gretchen Poortinga, Katherine M Hannan, Ross D Hannan, Gloria Rudenko. PLoS Negl Trop Dis 2017
15
6

S1-DRIP-seq identifies high expression and polyA tracts as major contributors to R-loop formation.
Lamia Wahba, Lorenzo Costantino, Frederick J Tan, Anjali Zimmer, Douglas Koshland. Genes Dev 2016
115
1

VSG mRNA levels are regulated by the production of functional VSG protein.
Isabella E Maudlin, Steve Kelly, Angela Schwede, Mark Carrington. Mol Biochem Parasitol 2021
1
100

Telomere length analysis by quantitative fluorescent in situ hybridization (Q-FISH).
Isabelle Ourliac-Garnier, Arturo Londoño-Vallejo. Methods Mol Biol 2011
13
7



Coupling of PARP1-mediated chromatin structural changes to transcriptional RNA polymerase II elongation and cotranscriptional splicing.
Elena A Matveeva, Qamar M H Al-Tinawi, Eric C Rouchka, Yvonne N Fondufe-Mittendorf. Epigenetics Chromatin 2019
18
5

PARP1 is a versatile factor in the regulation of mRNA stability and decay.
Elena A Matveeva, Lein F Mathbout, Yvonne N Fondufe-Mittendorf. Sci Rep 2019
7
14

Senescence-associated beta-galactosidase is lysosomal beta-galactosidase.
Bo Yun Lee, Jung A Han, Jun Sub Im, Amelia Morrone, Kimberly Johung, Edward C Goodwin, Wim J Kleijer, Daniel DiMaio, Eun Seong Hwang. Aging Cell 2006
527
1

The multifaceted role of PARP1 in RNA biogenesis.
Rebekah Eleazer, Yvonne N Fondufe-Mittendorf. Wiley Interdiscip Rev RNA 2021
3
33

Poly(ADP-ribosyl)ation by PARP-1: 'PAR-laying' NAD+ into a nuclear signal.
Mi Young Kim, Tong Zhang, W Lee Kraus. Genes Dev 2005
585
1

Reactivation of telomerase in cancer.
Semih Can Akincilar, Bilal Unal, Vinay Tergaonkar. Cell Mol Life Sci 2016
78
1

Inhibition of PARP1 by small interfering RNA enhances docetaxel activity against human prostate cancer PC3 cells.
Wenqi Wu, Zhenzhen Kong, Xiaolu Duan, Hanliang Zhu, Shujue Li, Shaohua Zeng, Yeping Liang, George Iliakis, Zhiming Gui, Dong Yang. Biochem Biophys Res Commun 2013
10
10

Nuclear ADP-ribosylation reactions in mammalian cells: where are we today and where are we going?
Paul O Hassa, Sandra S Haenni, Michael Elser, Michael O Hottiger. Microbiol Mol Biol Rev 2006
472
1

Poly(ADP-ribose) polymerase mediates inflammation in a mouse model of contact hypersensitivity.
Peter Bai, Csaba Hegedus, Eva Szabó, László Gyüre, Edina Bakondi, Attila Brunyánszki, Szabolcs Gergely, Csaba Szabó, László Virág. J Invest Dermatol 2009
17
5

Overcoming the nucleosome barrier during transcript elongation.
Steven J Petesch, John T Lis. Trends Genet 2012
94
1

Poly(ADP-ribosyl)ation links the chromatin remodeler SMARCA5/SNF2H to RNF168-dependent DNA damage signaling.
Godelieve Smeenk, Wouter W Wiegant, Jurgen A Marteijn, Martijn S Luijsterburg, Nicholas Sroczynski, Thomas Costelloe, Ron J Romeijn, Albert Pastink, Niels Mailand, Wim Vermeulen,[...]. J Cell Sci 2013
86
1

Reciprocal binding of PARP-1 and histone H1 at promoters specifies transcriptional outcomes.
Raga Krishnakumar, Matthew J Gamble, Kristine M Frizzell, Jhoanna G Berrocal, Miltiadis Kininis, W Lee Kraus. Science 2008
281
1

Telomere and adaptive immunity.
Nan-ping Weng. Mech Ageing Dev 2008
56
1

ADP-ribosylarginine hydrolase regulates cell proliferation and tumorigenesis.
Jiro Kato, Jianfeng Zhu, Chengyu Liu, Mario Stylianou, Victoria Hoffmann, Martin J Lizak, Connie G Glasgow, Joel Moss. Cancer Res 2011
37
2

Transcriptome-wide identification of the RNA-binding landscape of the chromatin-associated protein PARP1 reveals functions in RNA biogenesis.
Manana Melikishvili, Julia H Chariker, Eric C Rouchka, Yvonne N Fondufe-Mittendorf. Cell Discov 2017
27
3

PARP1 represses PAP and inhibits polyadenylation during heat shock.
Dafne Campigli Di Giammartino, Yongsheng Shi, James L Manley. Mol Cell 2013
52
1

A multicolor panel of novel lentiviral "gene ontology" (LeGO) vectors for functional gene analysis.
Kristoffer Weber, Udo Bartsch, Carol Stocking, Boris Fehse. Mol Ther 2008
212
1

Effect of adriamycin on BRCA1 and PARP-1 expression in MCF-7 breast cancer cells.
Hui Wang, Changqing Lu, Yan Tan, Jun Xie, Jingting Jiang. Int J Clin Exp Pathol 2014
7
14


The rise and fall of poly(ADP-ribose): An enzymatic perspective.
John M Pascal, Tom Ellenberger. DNA Repair (Amst) 2015
51
1

Expression and suppression of human telomerase RNA.
S Li, E H Blackburn. Cold Spring Harb Symp Quant Biol 2006
7
14

Chimeric bifunctional oligonucleotides as a novel tool to invade telomerase assembly.
Dulat Azhibek, Maria Zvereva, Timofei Zatsepin, Maria Rubtsova, Olga Dontsova. Nucleic Acids Res 2014
8
12

Global analysis of transcriptional regulation by poly(ADP-ribose) polymerase-1 and poly(ADP-ribose) glycohydrolase in MCF-7 human breast cancer cells.
Kristine M Frizzell, Matthew J Gamble, Jhoanna G Berrocal, Tong Zhang, Raga Krishnakumar, Yana Cen, Anthony A Sauve, W Lee Kraus. J Biol Chem 2009
84
1

Regulation of ALT-associated homology-directed repair by polyADP-ribosylation.
Song My Hoang, Nicole Kaminski, Ragini Bhargava, Jonathan Barroso-González, Michelle L Lynskey, Laura García-Expósito, Justin L Roncaioli, Anne R Wondisford, Callen T Wallace, Simon C Watkins,[...]. Nat Struct Mol Biol 2020
2
50

Impact of telomerase ablation on organismal viability, aging, and tumorigenesis in mice lacking the DNA repair proteins PARP-1, Ku86, or DNA-PKcs.
Silvia Espejel, Peter Klatt, Josiane Ménissier-de Murcia, Juan Martín-Caballero, Juana M Flores, Guillermo Taccioli, Gilbert de Murcia, María A Blasco. J Cell Biol 2004
65
1


Site-specific characterization of the Asp- and Glu-ADP-ribosylated proteome.
Yajie Zhang, Jianqi Wang, Ming Ding, Yonghao Yu. Nat Methods 2013
188
1

Assembly and trafficking of box C/D and H/ACA snoRNPs.
Séverine Massenet, Edouard Bertrand, Céline Verheggen. RNA Biol 2017
66
1



Role of ADP-ribosyl transferase in differentiation of human granulocyte-macrophage progenitors to the macrophage lineage.
G E Francis, D A Gray, J J Berney, M A Wing, J E Guimaraes, A V Hoffbrand. Blood 1983
38
2

ATP-dependent DNA binding, unwinding, and resection by the Mre11/Rad50 complex.
Yaqi Liu, Sihyun Sung, Youngran Kim, Fuyang Li, Gwanghyun Gwon, Aera Jo, Ae-Kyoung Kim, Taeyoon Kim, Ok-Kyu Song, Sang Eun Lee,[...]. EMBO J 2016
62
1


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.