A citation-based method for searching scientific literature

List of co-cited articles
294 articles co-cited >1

Times Cited
  Times     Co-cited

Genome-wide insertional mutagenesis of Arabidopsis thaliana.
José M Alonso, Anna N Stepanova, Thomas J Leisse, Christopher J Kim, Huaming Chen, Paul Shinn, Denise K Stevenson, Justin Zimmerman, Pascual Barajas, Rosa Cheuk,[...]. Science 2003

Firefly luciferase complementation imaging assay for protein-protein interactions in plants.
Huamin Chen, Yan Zou, Yulei Shang, Huiqiong Lin, Yujing Wang, Run Cai, Xiaoyan Tang, Jian-Min Zhou. Plant Physiol 2008

Trimmomatic: a flexible trimmer for Illumina sequence data.
Anthony M Bolger, Marc Lohse, Bjoern Usadel. Bioinformatics 2014

Egg cell-specific promoter-controlled CRISPR/Cas9 efficiently generates homozygous mutants for multiple target genes in Arabidopsis in a single generation.
Zhi-Ping Wang, Hui-Li Xing, Li Dong, Hai-Yan Zhang, Chun-Yan Han, Xue-Chen Wang, Qi-Jun Chen. Genome Biol 2015

HISAT: a fast spliced aligner with low memory requirements.
Daehwan Kim, Ben Langmead, Steven L Salzberg. Nat Methods 2015

PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences.
Magali Lescot, Patrice Déhais, Gert Thijs, Kathleen Marchal, Yves Moreau, Yves Van de Peer, Pierre Rouzé, Stephane Rombauts. Nucleic Acids Res 2002

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.
Sudhir Kumar, Glen Stecher, Michael Li, Christina Knyaz, Koichiro Tamura. Mol Biol Evol 2018

NIH Image to ImageJ: 25 years of image analysis.
Caroline A Schneider, Wayne S Rasband, Kevin W Eliceiri. Nat Methods 2012

Role of WUSCHEL in regulating stem cell fate in the Arabidopsis shoot meristem.
K F Mayer, H Schoof, A Haecker, M Lenhard, G Jürgens, T Laux. Cell 1998

Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.
Chia-Yi Cheng, Vivek Krishnakumar, Agnes P Chan, Françoise Thibaud-Nissen, Seth Schobel, Christopher D Town. Plant J 2017

Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012

Analyzing real-time PCR data by the comparative C(T) method.
Thomas D Schmittgen, Kenneth J Livak. Nat Protoc 2008

TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data.
Chengjie Chen, Hao Chen, Yi Zhang, Hannah R Thomas, Margaret H Frank, Yehua He, Rui Xia. Mol Plant 2020

Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana.
Xiaoli Li, Huimin Zhang, Qin Ai, Gang Liang, Diqiu Yu. Plant Physiol 2016

IRT1, an Arabidopsis transporter essential for iron uptake from the soil and for plant growth.
Grégory Vert, Natasha Grotz, Fabienne Dédaldéchamp, Frédéric Gaymard, Mary Lou Guerinot, Jean-François Briat, Catherine Curie. Plant Cell 2002

The plant immune system.
Jonathan D G Jones, Jeffery L Dangl. Nature 2006

A simple and rapid method for the preparation of plant genomic DNA for PCR analysis.
K Edwards, C Johnstone, C Thompson. Nucleic Acids Res 1991

Use of infrared thermal imaging to isolate Arabidopsis mutants defective in stomatal regulation.
Sylvain Merlot, Anna-Chiara Mustilli, Bernard Genty, Helen North, Valérie Lefebvre, Bruno Sotta, Alain Vavasseur, Jérôme Giraudat. Plant J 2002

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012

A central integrator of transcription networks in plant stress and energy signalling.
Elena Baena-González, Filip Rolland, Johan M Thevelein, Jen Sheen. Nature 2007

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks.
Cole Trapnell, Adam Roberts, Loyal Goff, Geo Pertea, Daehwan Kim, David R Kelley, Harold Pimentel, Steven L Salzberg, John L Rinn, Lior Pachter. Nat Protoc 2012

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.
Ben Langmead, Cole Trapnell, Mihai Pop, Steven L Salzberg. Genome Biol 2009

Basic local alignment search tool.
S F Altschul, W Gish, W Miller, E W Myers, D J Lipman. J Mol Biol 1990

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.
Sudhir Kumar, Glen Stecher, Koichiro Tamura. Mol Biol Evol 2016

OST1 kinase modulates freezing tolerance by enhancing ICE1 stability in Arabidopsis.
Yanglin Ding, Hui Li, Xiaoyan Zhang, Qi Xie, Zhizhong Gong, Shuhua Yang. Dev Cell 2015

A CRISPR/Cas9 toolkit for multiplex genome editing in plants.
Hui-Li Xing, Li Dong, Zhi-Ping Wang, Hai-Yan Zhang, Chun-Yan Han, Bing Liu, Xue-Chen Wang, Qi-Jun Chen. BMC Plant Biol 2014

Agrobacterium-mediated transformation of Arabidopsis thaliana using the floral dip method.
Xiuren Zhang, Rossana Henriques, Shih-Shun Lin, Qi-Wen Niu, Nam-Hai Chua. Nat Protoc 2006

A molecular framework for auxin-mediated initiation of flower primordia.
Nobutoshi Yamaguchi, Miin-Feng Wu, Cara M Winter, Markus C Berns, Staci Nole-Wilson, Ayako Yamaguchi, George Coupland, Beth A Krizek, Doris Wagner. Dev Cell 2013

MEME SUITE: tools for motif discovery and searching.
Timothy L Bailey, Mikael Boden, Fabian A Buske, Martin Frith, Charles E Grant, Luca Clementi, Jingyuan Ren, Wilfred W Li, William S Noble. Nucleic Acids Res 2009

Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana.
Mingli Xu, Tieqiang Hu, Jianfei Zhao, Mee-Yeon Park, Keith W Earley, Gang Wu, Li Yang, R Scott Poethig. PLoS Genet 2016

Phytozome: a comparative platform for green plant genomics.
David M Goodstein, Shengqiang Shu, Russell Howson, Rochak Neupane, Richard D Hayes, Joni Fazo, Therese Mitros, William Dirks, Uffe Hellsten, Nicholas Putnam,[...]. Nucleic Acids Res 2012

Auxin receptors and plant development: a new signaling paradigm.
Keithanne Mockaitis, Mark Estelle. Annu Rev Cell Dev Biol 2008

A novel iron-regulated metal transporter from plants identified by functional expression in yeast.
D Eide, M Broderius, J Fett, M L Guerinot. Proc Natl Acad Sci U S A 1996

FIT interacts with AtbHLH38 and AtbHLH39 in regulating iron uptake gene expression for iron homeostasis in Arabidopsis.
Youxi Yuan, Huilan Wu, Ning Wang, Jie Li, Weina Zhao, Juan Du, Daowen Wang, Hong-Qing Ling. Cell Res 2008

IRON MAN is a ubiquitous family of peptides that control iron transport in plants.
Louis Grillet, Ping Lan, Wenfeng Li, Girish Mokkapati, Wolfgang Schmidt. Nat Plants 2018

Primary transcripts of microRNAs encode regulatory peptides.
Dominique Lauressergues, Jean-Malo Couzigou, Hélène San Clemente, Yves Martinez, Christophe Dunand, Guillaume Bécard, Jean-Philippe Combier. Nature 2015

bHLH121 Functions as a Direct Link that Facilitates the Activation of FIT by bHLH IVc Transcription Factors for Maintaining Fe Homeostasis in Arabidopsis.
Rihua Lei, Yang Li, Yuerong Cai, Chenyang Li, Mengna Pu, Chengkai Lu, Yujie Yang, Gang Liang. Mol Plant 2020

The bHLH transcription factor bHLH104 interacts with IAA-LEUCINE RESISTANT3 and modulates iron homeostasis in Arabidopsis.
Jie Zhang, Bing Liu, Mengshu Li, Dongru Feng, Honglei Jin, Peng Wang, Jun Liu, Feng Xiong, Jinfa Wang, Hong-Bin Wang. Plant Cell 2015

The PEN1 syntaxin defines a novel cellular compartment upon fungal attack and is required for the timely assembly of papillae.
Farhah F Assaad, Jin-Long Qiu, Heather Youngs, David Ehrhardt, Laurent Zimmerli, Monika Kalde, Gehard Wanner, Scott C Peck, Herb Edwards, Katrina Ramonell,[...]. Mol Biol Cell 2004

Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.