A citation-based method for searching scientific literature

F Tronche, C Kellendonk, O Kretz, P Gass, K Anlag, P C Orban, R Bock, R Klein, G Schütz. Nat Genet 1999
Times Cited: 1375







List of co-cited articles
382 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
10

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
8

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
8

Cortical excitatory neurons and glia, but not GABAergic neurons, are produced in the Emx1-expressing lineage.
Jessica A Gorski, Tiffany Talley, Mengsheng Qiu, Luis Puelles, John L R Rubenstein, Kevin R Jones. J Neurosci 2002
760
6

Behavioral phenotyping of Nestin-Cre mice: implications for genetic mouse models of psychiatric disorders.
Sebastian A Giusti, Claudia A Vercelli, Annette M Vogl, Adam W Kolarz, Natalia S Pino, Jan M Deussing, Damian Refojo. J Psychiatr Res 2014
46
13

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
5

NIH Image to ImageJ: 25 years of image analysis.
Caroline A Schneider, Wayne S Rasband, Kevin W Eliceiri. Nat Methods 2012
5

Metabolic pitfalls of CNS Cre-based technology.
Erika Harno, Elizabeth C Cottrell, Anne White. Cell Metab 2013
132
5

Forebrain glucocorticoid receptors modulate anxiety-associated locomotor activation and adrenal responsiveness.
Maureen P Boyle, Benedict J Kolber, Sherri K Vogt, David F Wozniak, Louis J Muglia. J Neurosci 2006
123
5

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.
Aravind Subramanian, Pablo Tamayo, Vamsi K Mootha, Sayan Mukherjee, Benjamin L Ebert, Michael A Gillette, Amanda Paulovich, Scott L Pomeroy, Todd R Golub, Eric S Lander,[...]. Proc Natl Acad Sci U S A 2005
5

Cre reporter strains produced by targeted insertion of EYFP and ECFP into the ROSA26 locus.
S Srinivas, T Watanabe, C S Lin, C M William, Y Tanabe, T M Jessell, F Costantini. BMC Dev Biol 2001
5

Ablation of NF1 function in neurons induces abnormal development of cerebral cortex and reactive gliosis in the brain.
Y Zhu, M I Romero, P Ghosh, Z Ye, P Charnay, E J Rushing, J D Marth, L F Parada. Genes Dev 2001
403
5

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.
Mark D Robinson, Davis J McCarthy, Gordon K Smyth. Bioinformatics 2010
4

Model-based analysis of ChIP-Seq (MACS).
Yong Zhang, Tao Liu, Clifford A Meyer, Jérôme Eeckhoute, David S Johnson, Bradley E Bernstein, Chad Nusbaum, Richard M Myers, Myles Brown, Wei Li,[...]. Genome Biol 2008
4

Glucocorticoid receptor overexpression in forebrain: a mouse model of increased emotional lability.
Qiang Wei, Xin-Yun Lu, Li Liu, Gwen Schafer, Kun-Ruey Shieh, Sharon Burke, Terry E Robinson, Stanley J Watson, Audrey F Seasholtz, Huda Akil. Proc Natl Acad Sci U S A 2004
187
4

The cell biology of neurogenesis: toward an understanding of the development and evolution of the neocortex.
Elena Taverna, Magdalena Götz, Wieland B Huttner. Annu Rev Cell Dev Biol 2014
385
4

Conditional inactivation of androgen receptor gene in the nervous system: effects on male behavioral and neuroendocrine responses.
Kalina Raskin, Karel de Gendt, Anne Duittoz, Philippe Liere, Guido Verhoeven, François Tronche, Sakina Mhaouty-Kodja. J Neurosci 2009
150
4

Brain corticosteroid receptor balance in health and disease.
E R De Kloet, E Vreugdenhil, M S Oitzl, M Joëls. Endocr Rev 1998
4

Disrupting hypothalamic glucocorticoid receptors causes HPA axis hyperactivity and excess adiposity.
Gloria Laryea, Günther Schütz, Louis J Muglia. Mol Endocrinol 2013
60
6

HTSeq--a Python framework to work with high-throughput sequencing data.
Simon Anders, Paul Theodor Pyl, Wolfgang Huber. Bioinformatics 2015
4

Optimizing Nervous System-Specific Gene Targeting with Cre Driver Lines: Prevalence of Germline Recombination and Influencing Factors.
Lin Luo, Mateusz C Ambrozkiewicz, Fritz Benseler, Cui Chen, Emilie Dumontier, Susanne Falkner, Elisabetta Furlanis, Andrea M Gomez, Naosuke Hoshina, Wei-Hsiang Huang,[...]. Neuron 2020
40
10

Fighting the Fire: Mechanisms of Inflammatory Gene Regulation by the Glucocorticoid Receptor.
Laura Escoter-Torres, Giorgio Caratti, Aikaterini Mechtidou, Jan Tuckermann, Nina Henriette Uhlenhaut, Sabine Vettorazzi. Front Immunol 2019
46
8

Neurovascular Communication during CNS Development.
Isidora Paredes, Patricia Himmels, Carmen Ruiz de Almodóvar. Dev Cell 2018
73
5

Stress and the brain: from adaptation to disease.
E Ron de Kloet, Marian Joëls, Florian Holsboer. Nat Rev Neurosci 2005
4

hGFAP-cre transgenic mice for manipulation of glial and neuronal function in vivo.
L Zhuo, M Theis, I Alvarez-Maya, M Brenner, K Willecke, A Messing. Genesis 2001
466
4

The Sox9 transcription factor determines glial fate choice in the developing spinal cord.
C Claus Stolt, Petra Lommes, Elisabeth Sock, Marie-Christine Chaboissier, Andreas Schedl, Michael Wegner. Genes Dev 2003
436
3

Cell-type-specific repression by methyl-CpG-binding protein 2 is biased toward long genes.
Ken Sugino, Chris M Hempel, Benjamin W Okaty, Hannah A Arnson, Saori Kato, Vardhan S Dani, Sacha B Nelson. J Neurosci 2014
85
3

Disruption of DNA-methylation-dependent long gene repression in Rett syndrome.
Harrison W Gabel, Benyam Kinde, Hume Stroud, Caitlin S Gilbert, David A Harmin, Nathaniel R Kastan, Martin Hemberg, Daniel H Ebert, Michael E Greenberg. Nature 2015
318
3

Characterization of human mosaic Rett syndrome brain tissue by single-nucleus RNA sequencing.
William Renthal, Lisa D Boxer, Sinisa Hrvatin, Emmy Li, Andrew Silberfeld, M Aurel Nagy, Eric C Griffith, Thomas Vierbuchen, Michael E Greenberg. Nat Neurosci 2018
49
6

Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities.
Sven Heinz, Christopher Benner, Nathanael Spann, Eric Bertolino, Yin C Lin, Peter Laslo, Jason X Cheng, Cornelis Murre, Harinder Singh, Christopher K Glass. Mol Cell 2010
3

Neuronal MeCP2 is expressed at near histone-octamer levels and globally alters the chromatin state.
Peter J Skene, Robert S Illingworth, Shaun Webb, Alastair R W Kerr, Keith D James, Daniel J Turner, Rob Andrews, Adrian P Bird. Mol Cell 2010
446
3


deepTools2: a next generation web server for deep-sequencing data analysis.
Fidel Ramírez, Devon P Ryan, Björn Grüning, Vivek Bhardwaj, Fabian Kilpert, Andreas S Richter, Steffen Heyne, Friederike Dündar, Thomas Manke. Nucleic Acids Res 2016
3


MeCP2 recognizes cytosine methylated tri-nucleotide and di-nucleotide sequences to tune transcription in the mammalian brain.
Sabine Lagger, John C Connelly, Gabriele Schweikert, Shaun Webb, Jim Selfridge, Bernard H Ramsahoye, Miao Yu, Chuan He, Guido Sanguinetti, Lawrence C Sowers,[...]. PLoS Genet 2017
68
4

Biotin tagging of MeCP2 in mice reveals contextual insights into the Rett syndrome transcriptome.
Brian S Johnson, Ying-Tao Zhao, Maria Fasolino, Janine M Lamonica, Yoon Jung Kim, George Georgakilas, Kathleen H Wood, Daniel Bu, Yue Cui, Darren Goffin,[...]. Nat Med 2017
58
5

MeCP2, a key contributor to neurological disease, activates and represses transcription.
Maria Chahrour, Sung Yun Jung, Chad Shaw, Xiaobo Zhou, Stephen T C Wong, Jun Qin, Huda Y Zoghbi. Science 2008
3

Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
3

Rett syndrome is caused by mutations in X-linked MECP2, encoding methyl-CpG-binding protein 2.
R E Amir, I B Van den Veyver, M Wan, C Q Tran, U Francke, H Y Zoghbi. Nat Genet 1999
3

Rett syndrome mutations abolish the interaction of MeCP2 with the NCoR/SMRT co-repressor.
Matthew J Lyst, Robert Ekiert, Daniel H Ebert, Cara Merusi, Jakub Nowak, Jim Selfridge, Jacky Guy, Nathaniel R Kastan, Nathaniel D Robinson, Flavia de Lima Alves,[...]. Nat Neurosci 2013
221
3

Histone deacetylase 3 associates with MeCP2 to regulate FOXO and social behavior.
Alexi Nott, Jemmie Cheng, Fan Gao, Yuan-Ta Lin, Elizabeta Gjoneska, Tak Ko, Paras Minhas, Alicia Viridiana Zamudio, Jia Meng, Feiran Zhang,[...]. Nat Neurosci 2016
61
4

ADF/Cofilin Controls Synaptic Actin Dynamics and Regulates Synaptic Vesicle Mobilization and Exocytosis.
Michael Wolf, Anika-Maria Zimmermann, Andreas Görlich, Christine B Gurniak, Marco Sassoè-Pognetto, Eckhard Friauf, Walter Witke, Marco B Rust. Cereb Cortex 2015
49
6

The cell biology of neurogenesis.
Magdalena Götz, Wieland B Huttner. Nat Rev Mol Cell Biol 2005
3

Pax6, Tbr2, and Tbr1 are expressed sequentially by radial glia, intermediate progenitor cells, and postmitotic neurons in developing neocortex.
Chris Englund, Andy Fink, Charmaine Lau, Diane Pham, Ray A M Daza, Alessandro Bulfone, Tom Kowalczyk, Robert F Hevner. J Neurosci 2005
917
3

Profilin1 is required for glial cell adhesion and radial migration of cerebellar granule neurons.
Jan A Kullmann, Alexander Neumeyer, Christine B Gurniak, Eckhard Friauf, Walter Witke, Marco B Rust. EMBO Rep 2011
30
10

Neurons derived from radial glial cells establish radial units in neocortex.
S C Noctor, A C Flint, T A Weissman, R S Dammerman, A R Kriegstein. Nature 2001
3

Learning, AMPA receptor mobility and synaptic plasticity depend on n-cofilin-mediated actin dynamics.
Marco B Rust, Christine B Gurniak, Marianne Renner, Hugo Vara, Laura Morando, Andreas Görlich, Marco Sassoè-Pognetto, Mumna Al Banchaabouchi, Maurizio Giustetto, Antoine Triller,[...]. EMBO J 2010
150
3

The Rho-GTPase cdc42 regulates neural progenitor fate at the apical surface.
Silvia Cappello, Alessio Attardo, Xunwei Wu, Takuji Iwasato, Shigeyoshi Itohara, Michaela Wilsch-Bräuninger, Hanna M Eilken, Michael A Rieger, Timm T Schroeder, Wieland B Huttner,[...]. Nat Neurosci 2006
299
3

Cortical neurons arise in symmetric and asymmetric division zones and migrate through specific phases.
Stephen C Noctor, Verónica Martínez-Cerdeño, Lidija Ivic, Arnold R Kriegstein. Nat Neurosci 2004
3

N-cofilin is associated with neuronal migration disorders and cell cycle control in the cerebral cortex.
Gian Carlo Bellenchi, Christine B Gurniak, Emerald Perlas, Silvia Middei, Martine Ammassari-Teule, Walter Witke. Genes Dev 2007
138
3


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.